Wall clock time and date at job start Mon Mar 30 2020 07:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38501 * 120.10362 * 2 1 4 4 O 1.35907 * 119.98574 * 0.02903 * 3 2 1 5 5 C 1.38813 * 120.02690 * 180.23063 * 3 2 1 6 6 C 1.38282 * 120.23872 * 359.79626 * 5 3 2 7 7 C 1.37957 * 120.21231 * 359.97438 * 6 5 3 8 8 C 1.39491 * 120.10204 * 179.79699 * 2 1 3 9 9 C 1.47855 * 120.11758 * 0.02562 * 8 2 1 10 10 O 1.21550 * 120.00032 * 307.38299 * 9 8 2 11 11 N 1.34782 * 119.99766 * 127.38114 * 9 8 2 12 12 C 1.46493 * 119.99989 * 4.03280 * 11 9 8 13 13 C 1.46495 * 119.99831 * 184.03573 * 11 9 8 14 14 H 1.09004 * 109.47268 * 0.02562 * 13 11 9 15 15 C 1.53001 * 109.47333 * 119.99992 * 13 11 9 16 16 C 1.50699 * 109.47267 * 239.99798 * 13 11 9 17 17 H 1.08000 * 119.99950 * 0.02562 * 16 13 11 18 18 C 1.37872 * 120.00225 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00106 * 359.97438 * 18 16 13 20 20 Si 1.86807 * 120.00060 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47067 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47007 * 120.00126 * 20 18 16 23 23 H 1.48496 * 109.46911 * 239.99638 * 20 18 16 24 24 H 1.08998 * 109.47362 * 265.09232 * 1 2 3 25 25 H 1.09005 * 109.47386 * 25.09106 * 1 2 3 26 26 H 1.08997 * 109.47372 * 145.08958 * 1 2 3 27 27 H 0.96707 * 113.99732 * 270.20759 * 4 3 2 28 28 H 1.07995 * 119.87636 * 179.76620 * 5 3 2 29 29 H 1.08006 * 119.89415 * 179.97438 * 6 5 3 30 30 H 1.08001 * 120.02412 * 180.02562 * 7 6 5 31 31 H 1.09010 * 109.47047 * 84.48991 * 12 11 9 32 32 H 1.09005 * 109.47280 * 324.49587 * 12 11 9 33 33 H 1.09003 * 109.47231 * 204.49065 * 12 11 9 34 34 H 1.09000 * 109.46811 * 300.00153 * 15 13 11 35 35 H 1.09001 * 109.47358 * 59.99615 * 15 13 11 36 36 H 1.09002 * 109.47246 * 180.02562 * 15 13 11 37 37 H 0.97005 * 120.00210 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2016 1.1982 0.0000 4 8 1.5239 2.3763 0.0006 5 6 3.5897 1.1963 -0.0048 6 6 4.2845 0.0008 -0.0054 7 6 3.6026 -1.1985 -0.0007 8 6 2.2066 -1.2068 0.0043 9 6 1.4722 -2.4901 0.0083 10 8 0.6153 -2.6973 0.8450 11 7 1.7529 -3.4300 -0.9161 12 6 2.8450 -3.2170 -1.8690 13 6 0.9660 -4.6645 -0.9677 14 1 0.2046 -4.6430 -0.1880 15 6 0.2910 -4.7822 -2.3357 16 6 1.8734 -5.8481 -0.7519 17 1 2.9306 -5.6960 -0.5918 18 6 1.3541 -7.1253 -0.7589 19 7 0.0667 -7.3106 -0.9533 20 14 2.4789 -8.5925 -0.4906 21 1 3.8727 -8.1185 -0.2960 22 1 2.0373 -9.3411 0.7135 23 1 2.4208 -9.4840 -1.6767 24 1 -0.3634 -0.0879 1.0239 25 1 -0.3634 0.9307 -0.4358 26 1 -0.3634 -0.8427 -0.5881 27 1 1.3246 2.7158 -0.8827 28 1 4.1289 2.1321 -0.0086 29 1 5.3646 0.0058 -0.0096 30 1 4.1483 -2.1305 -0.0007 31 1 3.7882 -3.5203 -1.4144 32 1 2.8934 -2.1613 -2.1362 33 1 2.6661 -3.8109 -2.7653 34 1 -0.3654 -3.9261 -2.4919 35 1 1.0520 -4.8035 -3.1158 36 1 -0.2949 -5.7006 -2.3740 37 1 -0.2987 -8.2092 -0.9586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125610583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:45 Heat of formation + Delta-G solvation = -74.794948 kcal Electronic energy + Delta-G solvation = -20092.654070 eV Core-core repulsion = 17027.329996 eV Total energy + Delta-G solvation = -3065.324075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.55008 -40.01114 -37.49009 -37.19427 -34.82030 -33.64459 -32.01107 -30.39754 -28.08650 -27.61263 -27.30496 -24.97955 -23.00520 -22.24992 -20.43931 -19.14592 -18.49497 -17.66222 -17.29692 -17.01131 -16.80552 -16.39930 -15.79971 -15.54064 -14.83615 -14.47626 -14.39695 -14.23145 -14.00932 -13.53147 -13.33251 -13.22407 -13.05081 -12.97184 -12.75450 -12.71299 -12.58163 -12.40243 -12.19925 -12.12703 -11.67415 -11.19397 -10.72690 -10.52406 -9.82479 -9.55277 -9.38380 -8.15883 -6.32664 -0.01685 0.25971 1.40522 1.42349 1.53694 1.77030 2.23099 2.44181 2.66385 3.12238 3.27690 3.61370 3.82195 4.00578 4.09991 4.39715 4.45283 4.60287 4.64871 4.65676 4.70459 4.75789 4.84171 4.85739 4.98235 5.02672 5.16293 5.33403 5.36510 5.42489 5.45335 5.59752 5.64619 5.81501 6.00295 6.13506 6.73607 6.74930 6.86021 7.25193 7.42464 8.88897 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033411 B = 0.005212 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.841099 B = 5371.377421 C = 5787.821685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.088 4.088 3 C 0.101 3.899 4 O -0.499 6.499 5 C -0.118 4.118 6 C -0.100 4.100 7 C -0.100 4.100 8 C -0.124 4.124 9 C 0.540 3.460 10 O -0.596 6.596 11 N -0.591 5.591 12 C 0.085 3.915 13 C 0.260 3.740 14 H 0.008 0.992 15 C -0.132 4.132 16 C -0.537 4.537 17 H 0.061 0.939 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.967 3.033 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.040 0.960 27 H 0.409 0.591 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.134 0.866 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.019 0.981 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.625 17.185 -4.349 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.090 4.090 3 C 0.056 3.944 4 O -0.312 6.312 5 C -0.136 4.136 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.127 4.127 9 C 0.329 3.671 10 O -0.479 6.479 11 N -0.320 5.320 12 C -0.057 4.057 13 C 0.158 3.842 14 H 0.026 0.974 15 C -0.190 4.190 16 C -0.576 4.576 17 H 0.079 0.921 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.792 3.208 21 H -0.188 1.188 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.269 0.731 28 H 0.182 0.818 29 H 0.187 0.813 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.080 16.855 -3.381 19.441 hybrid contribution -0.251 -1.289 -0.126 1.319 sum 8.829 15.566 -3.507 18.236 Atomic orbital electron populations 1.20577 0.90907 1.02398 1.01988 1.20319 0.96846 0.91941 0.99877 1.18153 0.90527 0.84095 1.01644 1.84803 1.76499 1.34475 1.35381 1.21864 0.92450 1.00368 0.98899 1.21313 1.01777 0.90179 0.98527 1.21511 0.91469 1.00496 0.98366 1.19708 0.95079 0.91599 1.06321 1.18966 0.82568 0.84615 0.80998 1.90701 1.36373 1.81151 1.39632 1.48187 1.33795 1.18193 1.31813 1.21878 0.88938 1.01999 0.92848 1.18610 0.90527 0.80650 0.94395 0.97386 1.21884 0.99431 1.00397 0.97325 1.21578 0.94812 0.91245 1.49925 0.92052 1.25752 0.96549 1.01694 0.94491 1.70029 1.13075 1.22670 1.49922 0.85374 0.79038 0.78711 0.77685 1.18810 1.21246 1.19845 0.92226 0.88727 0.94103 0.73139 0.81836 0.81350 0.84773 0.91940 0.89946 0.90729 0.96199 0.93131 0.91176 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.22 8.79 71.23 0.63 -2.59 16 2 C -0.09 -2.69 5.92 -19.50 -0.12 -2.81 16 3 C 0.10 2.31 6.67 22.47 0.15 2.46 16 4 O -0.50 -9.27 12.46 -92.50 -1.15 -10.42 16 5 C -0.12 -2.09 9.98 22.42 0.22 -1.87 16 6 C -0.10 -1.83 10.02 22.21 0.22 -1.61 16 7 C -0.10 -2.61 7.91 22.53 0.18 -2.44 16 8 C -0.12 -4.23 4.76 -20.10 -0.10 -4.32 16 9 C 0.54 24.27 6.21 86.79 0.54 24.81 16 10 O -0.60 -32.53 15.38 -3.87 -0.06 -32.59 16 11 N -0.59 -26.18 2.75 -830.20 -2.29 -28.46 16 12 C 0.09 2.82 8.33 127.77 1.06 3.88 16 13 C 0.26 13.90 2.63 44.25 0.12 14.01 16 14 H 0.01 0.52 6.91 -2.38 -0.02 0.51 16 15 C -0.13 -6.46 8.96 71.98 0.64 -5.81 16 16 C -0.54 -29.60 8.37 25.60 0.21 -29.39 16 17 H 0.06 3.28 7.65 -2.91 -0.02 3.26 16 18 C 0.01 0.81 5.30 84.65 0.45 1.26 16 19 N -0.92 -53.40 11.32 21.45 0.24 -53.15 16 20 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.09 2.25 7.39 -2.38 -0.02 2.24 16 26 H 0.04 1.48 7.13 -2.39 -0.02 1.46 16 27 H 0.41 3.41 9.06 -74.05 -0.67 2.74 16 28 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.13 3.40 6.65 -2.91 -0.02 3.38 16 31 H 0.06 1.88 7.18 -2.38 -0.02 1.86 16 32 H 0.08 2.22 6.46 -2.38 -0.02 2.21 16 33 H 0.07 2.46 6.44 -2.39 -0.02 2.45 16 34 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 35 H 0.05 2.22 6.67 -2.39 -0.02 2.21 16 36 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 37 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -74.60 304.92 3.41 -71.19 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.42 Total: 12.53 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 4.22 Total: -4.41 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.04 Total: -81.62 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.21 Total: -43.01 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -74.60 3.41 -71.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125610583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.605 kcal (2) G-P(sol) polarization free energy of solvation -74.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds