Wall clock time and date at job start Mon Mar 30 2020 07:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38492 * 120.10323 * 2 1 4 4 O 1.35906 * 119.98652 * 0.02744 * 3 2 1 5 5 C 1.38816 * 120.03181 * 180.02562 * 3 2 1 6 6 C 1.38290 * 120.24011 * 0.02562 * 5 3 2 7 7 C 1.37971 * 120.20277 * 0.02562 * 6 5 3 8 8 C 1.39492 * 120.10406 * 180.02562 * 2 1 3 9 9 C 1.47856 * 120.11753 * 0.02562 * 8 2 1 10 10 O 1.21555 * 119.99644 * 306.00005 * 9 8 2 11 11 N 1.34776 * 120.00047 * 126.00163 * 9 8 2 12 12 C 1.46491 * 119.99997 * 4.36747 * 11 9 8 13 13 C 1.46506 * 119.99660 * 184.36833 * 11 9 8 14 14 H 1.08998 * 109.46981 * 359.97438 * 13 11 9 15 15 C 1.53004 * 109.47024 * 239.99883 * 13 11 9 16 16 C 1.50699 * 109.46723 * 119.99798 * 13 11 9 17 17 H 1.07993 * 120.00469 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99633 * 179.97438 * 16 13 11 19 19 N 1.31508 * 120.00189 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99921 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.46872 * 60.00029 * 20 18 16 22 22 H 1.48499 * 109.47047 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46898 * 299.99975 * 20 18 16 24 24 H 1.08998 * 109.47339 * 85.24140 * 1 2 3 25 25 H 1.09002 * 109.46607 * 205.24462 * 1 2 3 26 26 H 1.08998 * 109.46963 * 325.24240 * 1 2 3 27 27 H 0.96704 * 113.99928 * 269.97855 * 4 3 2 28 28 H 1.08003 * 119.88257 * 180.02562 * 5 3 2 29 29 H 1.07997 * 119.90174 * 179.97438 * 6 5 3 30 30 H 1.08001 * 120.01511 * 179.72267 * 7 6 5 31 31 H 1.09004 * 109.47052 * 84.68796 * 12 11 9 32 32 H 1.09009 * 109.47137 * 204.68602 * 12 11 9 33 33 H 1.08998 * 109.47516 * 324.68621 * 12 11 9 34 34 H 1.08999 * 109.46836 * 60.00214 * 15 13 11 35 35 H 1.08991 * 109.46842 * 179.97438 * 15 13 11 36 36 H 1.09002 * 109.46884 * 300.00225 * 15 13 11 37 37 H 0.97002 * 120.00394 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1981 0.0000 4 8 1.5239 2.3762 0.0006 5 6 3.5897 1.1964 -0.0005 6 6 4.2847 0.0008 -0.0016 7 6 3.6026 -1.1985 -0.0027 8 6 2.2066 -1.2068 -0.0005 9 6 1.4723 -2.4901 -0.0017 10 8 0.6331 -2.7108 0.8495 11 7 1.7335 -3.4151 -0.9465 12 6 2.8102 -3.1901 -1.9140 13 6 0.9405 -4.6456 -1.0058 14 1 0.1931 -4.6348 -0.2125 15 6 1.8604 -5.8544 -0.8228 16 6 0.2526 -4.7357 -2.3436 17 1 0.3923 -3.9549 -3.0764 18 6 -0.5545 -5.8156 -2.6323 19 7 -0.7244 -6.7668 -1.7402 20 14 -1.4068 -5.9278 -4.2909 21 1 -0.3878 -5.9425 -5.3709 22 1 -2.2106 -7.1749 -4.3510 23 1 -2.2998 -4.7547 -4.4688 24 1 -0.3634 0.0853 -1.0241 25 1 -0.3632 -0.9296 0.4383 26 1 -0.3633 0.8443 0.5859 27 1 1.3277 2.7175 -0.8827 28 1 4.1290 2.1322 -0.0001 29 1 5.3647 0.0058 -0.0024 30 1 4.1484 -2.1304 -0.0080 31 1 3.7591 -3.5081 -1.4820 32 1 2.6119 -3.7653 -2.8185 33 1 2.8607 -2.1298 -2.1614 34 1 2.3579 -5.7891 0.1448 35 1 1.2704 -6.7698 -0.8665 36 1 2.6081 -5.8654 -1.6159 37 1 -1.2925 -7.5264 -1.9431 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125610765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:48 Heat of formation + Delta-G solvation = -52.633138 kcal Electronic energy + Delta-G solvation = -20124.610098 eV Core-core repulsion = 17060.247031 eV Total energy + Delta-G solvation = -3064.363067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27503 -38.64631 -36.43532 -35.41761 -32.90519 -32.47428 -30.46983 -28.91633 -26.86032 -26.11255 -25.24100 -23.61492 -21.78847 -20.79660 -19.05914 -17.83702 -16.51994 -16.15725 -16.10179 -15.77738 -15.42411 -14.89745 -14.27863 -14.03704 -13.43725 -13.12032 -13.00868 -12.68696 -12.53028 -12.17670 -11.94642 -11.68299 -11.61555 -11.38279 -11.30523 -11.05634 -10.87213 -10.73206 -10.67429 -10.26751 -10.19732 -9.24014 -9.02908 -8.69074 -8.52232 -8.44609 -7.63664 -6.09743 -4.18209 1.08950 1.27843 3.22598 3.26110 3.31514 3.33131 3.58132 3.98291 4.23711 4.38038 4.86891 4.89756 5.02288 5.17825 5.21520 5.43236 5.71401 5.78200 5.81293 5.89022 5.92877 6.00103 6.31134 6.35550 6.36274 6.43061 6.62263 6.72161 6.77768 6.83275 7.03993 7.38738 7.49904 7.59959 7.68589 7.98614 8.16062 8.46823 8.78307 8.97997 9.48237 10.95531 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026845 B = 0.005516 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.779211 B = 5074.719926 C = 5411.387904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C 0.093 3.907 4 O -0.495 6.495 5 C -0.132 4.132 6 C -0.118 4.118 7 C -0.096 4.096 8 C -0.099 4.099 9 C 0.548 3.452 10 O -0.543 6.543 11 N -0.583 5.583 12 C 0.083 3.917 13 C 0.257 3.743 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.387 0.613 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.011 0.989 35 H 0.094 0.906 36 H 0.030 0.970 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.243 13.027 -0.615 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.063 4.063 3 C 0.049 3.951 4 O -0.304 6.304 5 C -0.151 4.151 6 C -0.136 4.136 7 C -0.114 4.114 8 C -0.102 4.102 9 C 0.335 3.665 10 O -0.422 6.422 11 N -0.313 5.313 12 C -0.061 4.061 13 C 0.158 3.842 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 H 0.087 0.913 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.242 0.758 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.112 0.888 36 H 0.049 0.951 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.719 12.616 0.447 15.342 hybrid contribution -0.313 0.011 -1.526 1.558 sum 8.405 12.627 -1.079 15.207 Atomic orbital electron populations 1.20966 0.90083 1.05207 1.02523 1.20243 0.97236 0.91059 0.97780 1.18139 0.89719 0.84669 1.02600 1.84811 1.76635 1.35651 1.33313 1.21451 0.93285 0.98859 1.01483 1.20897 0.99898 0.91588 1.01183 1.21353 0.92836 0.98776 0.98450 1.19998 0.93895 0.93824 1.02493 1.18198 0.82792 0.83274 0.82283 1.90714 1.34584 1.79096 1.37809 1.48221 1.33781 1.20517 1.28746 1.21700 0.89452 1.00762 0.94200 1.18996 0.89183 0.77595 0.98475 0.91804 1.22083 0.99021 1.02909 0.96438 1.21264 1.28748 1.06631 1.00004 0.92268 1.24886 0.96165 0.95415 0.97213 1.69866 1.38140 1.10299 1.34144 0.86549 0.79584 0.77465 0.83751 1.20225 1.21128 1.20246 0.91270 0.88639 0.91001 0.75793 0.85462 0.85325 0.85134 0.93847 0.89876 0.92726 0.96947 0.88769 0.95115 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.41 36.00 0.34 -1.80 16 2 C -0.06 -1.00 5.93 -104.06 -0.62 -1.61 16 3 C 0.09 1.25 6.67 -39.27 -0.26 0.99 16 4 O -0.49 -5.72 12.63 -19.44 -0.25 -5.97 16 5 C -0.13 -1.53 9.98 -39.35 -0.39 -1.92 16 6 C -0.12 -1.34 10.03 -39.66 -0.40 -1.74 16 7 C -0.10 -1.33 7.95 -39.17 -0.31 -1.64 16 8 C -0.10 -1.70 4.71 -104.98 -0.49 -2.20 16 9 C 0.55 11.76 6.55 -12.32 -0.08 11.68 16 10 O -0.54 -13.62 14.40 5.32 0.08 -13.54 16 11 N -0.58 -12.52 2.75 -176.37 -0.49 -13.01 16 12 C 0.08 1.41 8.10 59.84 0.48 1.89 16 13 C 0.26 6.55 2.63 -69.08 -0.18 6.37 16 14 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 15 C -0.15 -3.48 8.97 37.16 0.33 -3.14 16 16 C -0.53 -14.08 7.96 -34.44 -0.27 -14.36 16 17 H 0.06 1.55 7.42 -52.49 -0.39 1.16 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 20 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.09 1.87 5.53 -51.93 -0.29 1.58 16 26 H 0.07 1.05 7.68 -51.93 -0.40 0.65 16 27 H 0.39 2.63 9.06 45.56 0.41 3.04 16 28 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.13 1.68 6.79 -52.49 -0.36 1.32 16 31 H 0.04 0.63 7.27 -51.93 -0.38 0.26 16 32 H 0.08 1.49 7.10 -51.92 -0.37 1.12 16 33 H 0.05 0.82 6.47 -51.93 -0.34 0.48 16 34 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 36 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -31.70 304.82 -6.40 -38.11 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.00 Total: 4.08 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.95 Total: -5.80 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.14 Total: -37.23 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.17 Total: -19.51 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.70 -6.40 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125610765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.527 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds