Wall clock time and date at job start Mon Mar 30 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38492 * 120.10323 * 2 1 4 4 O 1.35906 * 119.98652 * 0.02744 * 3 2 1 5 5 C 1.38816 * 120.03181 * 180.02562 * 3 2 1 6 6 C 1.38290 * 120.24011 * 0.02562 * 5 3 2 7 7 C 1.37971 * 120.20277 * 0.02562 * 6 5 3 8 8 C 1.39492 * 120.10406 * 180.02562 * 2 1 3 9 9 C 1.47856 * 120.11753 * 0.02562 * 8 2 1 10 10 O 1.21555 * 119.99644 * 306.00005 * 9 8 2 11 11 N 1.34776 * 120.00047 * 126.00163 * 9 8 2 12 12 C 1.46491 * 119.99997 * 4.36747 * 11 9 8 13 13 C 1.46506 * 119.99660 * 184.36833 * 11 9 8 14 14 H 1.08998 * 109.46981 * 359.97438 * 13 11 9 15 15 C 1.53004 * 109.47024 * 239.99883 * 13 11 9 16 16 C 1.50699 * 109.46723 * 119.99798 * 13 11 9 17 17 H 1.07993 * 120.00469 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99633 * 179.97438 * 16 13 11 19 19 N 1.31508 * 120.00189 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99921 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.46872 * 60.00029 * 20 18 16 22 22 H 1.48499 * 109.47047 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46898 * 299.99975 * 20 18 16 24 24 H 1.08998 * 109.47339 * 85.24140 * 1 2 3 25 25 H 1.09002 * 109.46607 * 205.24462 * 1 2 3 26 26 H 1.08998 * 109.46963 * 325.24240 * 1 2 3 27 27 H 0.96704 * 113.99928 * 269.97855 * 4 3 2 28 28 H 1.08003 * 119.88257 * 180.02562 * 5 3 2 29 29 H 1.07997 * 119.90174 * 179.97438 * 6 5 3 30 30 H 1.08001 * 120.01511 * 179.72267 * 7 6 5 31 31 H 1.09004 * 109.47052 * 84.68796 * 12 11 9 32 32 H 1.09009 * 109.47137 * 204.68602 * 12 11 9 33 33 H 1.08998 * 109.47516 * 324.68621 * 12 11 9 34 34 H 1.08999 * 109.46836 * 60.00214 * 15 13 11 35 35 H 1.08991 * 109.46842 * 179.97438 * 15 13 11 36 36 H 1.09002 * 109.46884 * 300.00225 * 15 13 11 37 37 H 0.97002 * 120.00394 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1981 0.0000 4 8 1.5239 2.3762 0.0006 5 6 3.5897 1.1964 -0.0005 6 6 4.2847 0.0008 -0.0016 7 6 3.6026 -1.1985 -0.0027 8 6 2.2066 -1.2068 -0.0005 9 6 1.4723 -2.4901 -0.0017 10 8 0.6331 -2.7108 0.8495 11 7 1.7335 -3.4151 -0.9465 12 6 2.8102 -3.1901 -1.9140 13 6 0.9405 -4.6456 -1.0058 14 1 0.1931 -4.6348 -0.2125 15 6 1.8604 -5.8544 -0.8228 16 6 0.2526 -4.7357 -2.3436 17 1 0.3923 -3.9549 -3.0764 18 6 -0.5545 -5.8156 -2.6323 19 7 -0.7244 -6.7668 -1.7402 20 14 -1.4068 -5.9278 -4.2909 21 1 -0.3878 -5.9425 -5.3709 22 1 -2.2106 -7.1749 -4.3510 23 1 -2.2998 -4.7547 -4.4688 24 1 -0.3634 0.0853 -1.0241 25 1 -0.3632 -0.9296 0.4383 26 1 -0.3633 0.8443 0.5859 27 1 1.3277 2.7175 -0.8827 28 1 4.1290 2.1322 -0.0001 29 1 5.3647 0.0058 -0.0024 30 1 4.1484 -2.1304 -0.0080 31 1 3.7591 -3.5081 -1.4820 32 1 2.6119 -3.7653 -2.8185 33 1 2.8607 -2.1298 -2.1614 34 1 2.3579 -5.7891 0.1448 35 1 1.2704 -6.7698 -0.8665 36 1 2.6081 -5.8654 -1.6159 37 1 -1.2925 -7.5264 -1.9431 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125610765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:47 Heat of formation + Delta-G solvation = -74.566351 kcal Electronic energy + Delta-G solvation = -20125.561193 eV Core-core repulsion = 17060.247031 eV Total energy + Delta-G solvation = -3065.314162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.55428 -40.00441 -37.48432 -37.20118 -34.82191 -33.61749 -31.99614 -30.41785 -28.08549 -27.55253 -27.31051 -24.95548 -23.04845 -22.23408 -20.45616 -19.14260 -18.42915 -17.66051 -17.35624 -17.07961 -16.78742 -16.33324 -15.76792 -15.55416 -14.82542 -14.44570 -14.34684 -14.16743 -14.11518 -13.61511 -13.25210 -13.17299 -13.04544 -12.93483 -12.77927 -12.69019 -12.60107 -12.40252 -12.19945 -12.12649 -11.69414 -11.23131 -10.68452 -10.50500 -9.80846 -9.54282 -9.37809 -8.15929 -6.32958 0.00096 0.26454 1.40927 1.43414 1.50872 1.73983 2.24037 2.44345 2.66746 3.12048 3.29374 3.61779 3.83527 4.02366 4.10703 4.41835 4.45540 4.62950 4.64765 4.69292 4.72910 4.77487 4.83018 4.89667 4.99281 5.04274 5.20025 5.34202 5.37250 5.43920 5.48282 5.57644 5.64745 5.82569 6.01154 6.13674 6.73348 6.74366 6.84906 7.24762 7.42036 8.88522 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026845 B = 0.005516 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.779211 B = 5074.719926 C = 5411.387904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C 0.098 3.902 4 O -0.500 6.500 5 C -0.119 4.119 6 C -0.100 4.100 7 C -0.098 4.098 8 C -0.124 4.124 9 C 0.541 3.459 10 O -0.596 6.596 11 N -0.589 5.589 12 C 0.082 3.918 13 C 0.261 3.739 14 H 0.008 0.992 15 C -0.131 4.131 16 C -0.540 4.540 17 H 0.061 0.939 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.966 3.034 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.278 1.278 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.409 0.591 28 H 0.163 0.837 29 H 0.171 0.829 30 H 0.140 0.860 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.019 0.981 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.962 15.356 -2.181 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 C 0.054 3.946 4 O -0.313 6.313 5 C -0.137 4.137 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.127 4.127 9 C 0.330 3.670 10 O -0.479 6.479 11 N -0.318 5.318 12 C -0.060 4.060 13 C 0.159 3.841 14 H 0.026 0.974 15 C -0.190 4.190 16 C -0.578 4.578 17 H 0.079 0.921 18 C -0.183 4.183 19 N -0.555 5.555 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.209 1.209 23 H -0.203 1.203 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.268 0.732 28 H 0.181 0.819 29 H 0.189 0.811 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.038 0.962 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.474 14.972 -1.156 18.898 hybrid contribution -1.136 -0.602 -0.988 1.622 sum 10.338 14.370 -2.145 17.831 Atomic orbital electron populations 1.20822 0.91379 1.03332 1.02633 1.20313 0.96740 0.92106 0.99838 1.18181 0.90607 0.84069 1.01788 1.84759 1.76617 1.34578 1.35354 1.21869 0.92322 1.00513 0.99005 1.21334 1.01820 0.90141 0.98473 1.21509 0.91177 1.00629 0.98322 1.19695 0.95220 0.91530 1.06263 1.18962 0.82261 0.84570 0.81192 1.90671 1.37095 1.80310 1.39871 1.48197 1.34382 1.19417 1.29820 1.21912 0.89002 1.02229 0.92862 1.18603 0.89152 0.80140 0.96196 0.97409 1.21865 0.98644 1.00953 0.97494 1.21505 1.29233 1.06731 1.00348 0.92094 1.25739 0.96750 0.95036 1.00825 1.70015 1.38706 1.10792 1.36018 0.85500 0.78624 0.77220 0.79625 1.18553 1.20851 1.20320 0.90779 0.92894 0.89781 0.73220 0.81916 0.81127 0.84195 0.90908 0.90865 0.90449 0.96190 0.91281 0.93198 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.41 71.24 0.67 -3.56 16 2 C -0.09 -2.80 5.93 -19.50 -0.12 -2.92 16 3 C 0.10 2.35 6.67 22.47 0.15 2.50 16 4 O -0.50 -10.03 12.63 -92.49 -1.17 -11.20 16 5 C -0.12 -2.15 9.98 22.42 0.22 -1.93 16 6 C -0.10 -1.77 10.03 22.22 0.22 -1.55 16 7 C -0.10 -2.45 7.95 22.54 0.18 -2.27 16 8 C -0.12 -4.23 4.71 -20.10 -0.09 -4.33 16 9 C 0.54 24.25 6.55 86.79 0.57 24.82 16 10 O -0.60 -32.38 14.40 -3.89 -0.06 -32.44 16 11 N -0.59 -25.96 2.75 -830.19 -2.29 -28.25 16 12 C 0.08 2.68 8.10 127.77 1.03 3.72 16 13 C 0.26 13.89 2.63 44.24 0.12 14.01 16 14 H 0.01 0.51 6.91 -2.39 -0.02 0.49 16 15 C -0.13 -6.41 8.97 71.98 0.65 -5.76 16 16 C -0.54 -29.57 7.96 25.60 0.20 -29.37 16 17 H 0.06 3.23 7.42 -2.91 -0.02 3.21 16 18 C 0.02 0.90 5.30 84.66 0.45 1.35 16 19 N -0.92 -53.13 11.32 21.45 0.24 -52.88 16 20 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.05 2.24 5.53 -2.39 -0.01 2.23 16 26 H 0.08 2.50 7.68 -2.39 -0.02 2.49 16 27 H 0.41 4.20 9.06 -74.05 -0.67 3.53 16 28 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 29 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.14 3.17 6.79 -2.91 -0.02 3.15 16 31 H 0.07 1.94 7.27 -2.39 -0.02 1.92 16 32 H 0.07 2.53 7.10 -2.38 -0.02 2.52 16 33 H 0.08 2.17 6.47 -2.39 -0.02 2.15 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 36 H 0.05 2.18 7.67 -2.39 -0.02 2.17 16 37 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -73.96 304.82 3.43 -70.53 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.42 Total: 14.52 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 4.25 Total: -5.29 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -2.04 Total: -81.13 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.22 Total: -43.63 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -73.96 3.43 -70.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125610765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.040 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds