Wall clock time and date at job start Mon Mar 30 2020 07:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38500 * 120.10282 * 2 1 4 4 O 1.35912 * 119.98067 * 0.02562 * 3 2 1 5 5 C 1.38804 * 120.03545 * 180.02562 * 3 2 1 6 6 C 1.38292 * 120.23516 * 359.97438 * 5 3 2 7 7 C 1.37971 * 120.20656 * 359.71841 * 6 5 3 8 8 C 1.39491 * 120.10662 * 180.02562 * 2 1 3 9 9 C 1.47850 * 120.11347 * 359.97438 * 8 2 1 10 10 O 1.21551 * 120.00644 * 354.01983 * 9 8 2 11 11 N 1.34785 * 119.99788 * 174.02762 * 9 8 2 12 12 C 1.46499 * 119.99999 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47175 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47416 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47266 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00268 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99903 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00315 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00003 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46833 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47052 * 120.00063 * 19 17 15 22 22 H 1.48500 * 109.46746 * 240.00265 * 19 17 15 23 23 H 1.08998 * 109.47225 * 263.39297 * 1 2 3 24 24 H 1.08998 * 109.47793 * 23.39521 * 1 2 3 25 25 H 1.09003 * 109.46775 * 143.39441 * 1 2 3 26 26 H 0.96704 * 114.00008 * 90.00267 * 4 3 2 27 27 H 1.07995 * 119.88664 * 180.02562 * 5 3 2 28 28 H 1.08001 * 119.89672 * 180.02562 * 6 5 3 29 29 H 1.08002 * 120.01201 * 180.30111 * 7 6 5 30 30 H 0.96996 * 119.99701 * 359.97438 * 11 9 8 31 31 H 1.08996 * 109.46834 * 299.99628 * 12 11 9 32 32 H 1.09000 * 109.46918 * 59.99765 * 12 11 9 33 33 H 1.09003 * 109.47479 * 300.00464 * 13 12 11 34 34 H 1.09009 * 109.47148 * 59.99697 * 13 12 11 35 35 H 1.09006 * 109.47276 * 299.99956 * 14 13 12 36 36 H 1.08997 * 109.47388 * 60.00015 * 14 13 12 37 37 H 0.96994 * 120.00307 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2016 1.1982 0.0000 4 8 1.5238 2.3762 0.0005 5 6 3.5896 1.1966 -0.0005 6 6 4.2846 0.0010 -0.0005 7 6 3.6026 -1.1984 0.0059 8 6 2.2066 -1.2067 -0.0005 9 6 1.4723 -2.4900 -0.0005 10 8 0.2618 -2.4976 0.1096 11 7 2.1452 -3.6515 -0.1225 12 6 1.4177 -4.9230 -0.1220 13 6 2.4095 -6.0781 -0.2735 14 6 1.6498 -7.4061 -0.2722 15 6 2.6268 -8.5439 -0.4208 16 1 3.6839 -8.3402 -0.5071 17 6 2.1712 -9.8450 -0.4456 18 7 0.8840 -10.0931 -0.3401 19 14 3.3822 -11.2553 -0.6305 20 1 4.7613 -10.7136 -0.7298 21 1 3.2857 -12.1488 0.5516 22 1 3.0622 -12.0244 -1.8599 23 1 -0.3633 -0.1182 1.0208 24 1 -0.3634 0.9431 -0.4080 25 1 -0.3633 -0.8250 -0.6128 26 1 1.3280 2.7170 0.8841 27 1 4.1289 2.1323 -0.0001 28 1 5.3646 0.0061 -0.0005 29 1 4.1485 -2.1302 0.0107 30 1 3.1112 -3.6453 -0.2107 31 1 0.8749 -5.0306 0.8171 32 1 0.7127 -4.9386 -0.9531 33 1 2.9521 -5.9703 -1.2126 34 1 3.1149 -6.0627 0.5575 35 1 1.1076 -7.5137 0.6672 36 1 0.9442 -7.4219 -1.1028 37 1 0.5635 -11.0084 -0.3572 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125615926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:44 Heat of formation + Delta-G solvation = -71.490814 kcal Electronic energy + Delta-G solvation = -18738.116875 eV Core-core repulsion = 15672.936078 eV Total energy + Delta-G solvation = -3065.180797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.62750 -39.01681 -36.74382 -35.56867 -33.44156 -32.64763 -31.56097 -30.12544 -27.34787 -26.51363 -24.11591 -22.89745 -21.67650 -20.82174 -20.20893 -18.58763 -16.99232 -16.59151 -16.21093 -15.85233 -15.47217 -15.32391 -15.04955 -14.45900 -14.12608 -13.77309 -13.40654 -13.07002 -12.53975 -12.42392 -12.30857 -12.10744 -11.84599 -11.73005 -11.68856 -10.93710 -10.93338 -10.75111 -10.58192 -9.89707 -9.74473 -9.35488 -9.21569 -9.12076 -8.85698 -8.73425 -8.39199 -6.03565 -4.06725 0.59712 0.96343 2.74960 3.26685 3.28835 3.36514 3.40014 3.56335 3.94628 4.42771 4.53900 4.57732 4.71022 4.81708 5.13580 5.32368 5.37836 5.49531 5.60040 5.71522 5.74109 5.75386 5.96918 6.04222 6.11017 6.13271 6.28329 6.42368 6.54592 6.56703 6.80037 6.97399 7.32979 7.61721 7.64702 7.73844 7.95119 8.30846 8.36822 9.00171 9.57676 11.07767 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044621 B = 0.003098 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.361940 B = 9036.172280 C = 9625.722570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.048 4.048 3 C 0.090 3.910 4 O -0.493 6.493 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.091 4.091 8 C -0.121 4.121 9 C 0.550 3.450 10 O -0.533 6.533 11 N -0.720 5.720 12 C 0.116 3.884 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.098 0.902 26 H 0.389 0.611 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.397 0.603 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.626 23.271 2.188 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.050 4.050 3 C 0.046 3.954 4 O -0.303 6.303 5 C -0.138 4.138 6 C -0.137 4.137 7 C -0.109 4.109 8 C -0.124 4.124 9 C 0.337 3.663 10 O -0.411 6.411 11 N -0.370 5.370 12 C -0.006 4.006 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.117 0.883 26 H 0.245 0.755 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.646 23.023 1.657 23.545 hybrid contribution 1.179 -0.787 0.380 1.468 sum 5.825 22.235 2.037 23.076 Atomic orbital electron populations 1.21001 0.89422 1.03583 1.03647 1.20389 0.97681 0.90996 0.95917 1.18173 0.89730 0.84894 1.02648 1.84824 1.76491 1.35483 1.33493 1.21582 0.93383 0.99129 0.99739 1.20955 1.00279 0.91531 1.00963 1.21380 0.92943 0.98884 0.97734 1.19818 0.93548 0.93298 1.05760 1.18207 0.87199 0.83670 0.77195 1.90726 1.13601 1.87125 1.49680 1.46161 1.10976 1.06401 1.73507 1.21690 0.95674 0.81079 1.02162 1.21899 0.97835 0.95384 1.00821 1.19032 0.95525 0.89156 0.97692 1.21238 0.93504 0.91087 1.50221 0.92587 1.25035 0.95140 0.99027 0.95284 1.69972 1.12901 1.19990 1.50395 0.86527 0.81356 0.82356 0.77697 1.19750 1.20996 1.20983 0.90781 0.91835 0.88325 0.75529 0.85078 0.84928 0.85107 0.76783 0.91538 0.91548 0.92677 0.92694 0.96242 0.96233 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 8.58 36.00 0.31 -1.17 16 2 C -0.05 -0.59 5.93 -104.06 -0.62 -1.20 16 3 C 0.09 0.92 6.67 -39.28 -0.26 0.66 16 4 O -0.49 -4.32 12.44 -19.46 -0.24 -4.56 16 5 C -0.12 -1.03 9.98 -39.35 -0.39 -1.42 16 6 C -0.12 -0.99 10.03 -39.66 -0.40 -1.38 16 7 C -0.09 -0.89 9.52 -39.17 -0.37 -1.26 16 8 C -0.12 -1.52 5.87 -104.99 -0.62 -2.14 16 9 C 0.55 8.39 7.70 -12.32 -0.09 8.29 16 10 O -0.53 -9.68 13.34 5.32 0.07 -9.61 16 11 N -0.72 -10.38 5.51 -61.25 -0.34 -10.71 16 12 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 13 C -0.12 -2.34 5.27 -26.74 -0.14 -2.48 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.69 7.34 -51.93 -0.38 0.31 16 25 H 0.10 1.44 5.85 -51.93 -0.30 1.14 16 26 H 0.39 1.58 9.06 45.56 0.41 1.99 16 27 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 29 H 0.13 1.02 6.45 -52.49 -0.34 0.68 16 30 H 0.40 4.60 6.54 -40.82 -0.27 4.34 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 314.59 15.07 4.74 4.74 Total: -1.00 -33.18 314.59 -7.43 -40.61 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.22 Total: 2.10 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -3.16 Total: -12.95 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.40 Total: -36.70 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.17 Total: -14.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.18 -7.43 -40.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125615926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.877 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds