Wall clock time and date at job start Mon Mar 30 2020 07:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38500 * 120.10282 * 2 1 4 4 O 1.35912 * 119.98067 * 0.02562 * 3 2 1 5 5 C 1.38804 * 120.03545 * 180.02562 * 3 2 1 6 6 C 1.38292 * 120.23516 * 359.97438 * 5 3 2 7 7 C 1.37971 * 120.20656 * 359.71841 * 6 5 3 8 8 C 1.39491 * 120.10662 * 180.02562 * 2 1 3 9 9 C 1.47850 * 120.11347 * 359.97438 * 8 2 1 10 10 O 1.21551 * 120.00644 * 354.01983 * 9 8 2 11 11 N 1.34785 * 119.99788 * 174.02762 * 9 8 2 12 12 C 1.46499 * 119.99999 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47175 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47416 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47266 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00268 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99903 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00315 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00003 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46833 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47052 * 120.00063 * 19 17 15 22 22 H 1.48500 * 109.46746 * 240.00265 * 19 17 15 23 23 H 1.08998 * 109.47225 * 263.39297 * 1 2 3 24 24 H 1.08998 * 109.47793 * 23.39521 * 1 2 3 25 25 H 1.09003 * 109.46775 * 143.39441 * 1 2 3 26 26 H 0.96704 * 114.00008 * 90.00267 * 4 3 2 27 27 H 1.07995 * 119.88664 * 180.02562 * 5 3 2 28 28 H 1.08001 * 119.89672 * 180.02562 * 6 5 3 29 29 H 1.08002 * 120.01201 * 180.30111 * 7 6 5 30 30 H 0.96996 * 119.99701 * 359.97438 * 11 9 8 31 31 H 1.08996 * 109.46834 * 299.99628 * 12 11 9 32 32 H 1.09000 * 109.46918 * 59.99765 * 12 11 9 33 33 H 1.09003 * 109.47479 * 300.00464 * 13 12 11 34 34 H 1.09009 * 109.47148 * 59.99697 * 13 12 11 35 35 H 1.09006 * 109.47276 * 299.99956 * 14 13 12 36 36 H 1.08997 * 109.47388 * 60.00015 * 14 13 12 37 37 H 0.96994 * 120.00307 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2016 1.1982 0.0000 4 8 1.5238 2.3762 0.0005 5 6 3.5896 1.1966 -0.0005 6 6 4.2846 0.0010 -0.0005 7 6 3.6026 -1.1984 0.0059 8 6 2.2066 -1.2067 -0.0005 9 6 1.4723 -2.4900 -0.0005 10 8 0.2618 -2.4976 0.1096 11 7 2.1452 -3.6515 -0.1225 12 6 1.4177 -4.9230 -0.1220 13 6 2.4095 -6.0781 -0.2735 14 6 1.6498 -7.4061 -0.2722 15 6 2.6268 -8.5439 -0.4208 16 1 3.6839 -8.3402 -0.5071 17 6 2.1712 -9.8450 -0.4456 18 7 0.8840 -10.0931 -0.3401 19 14 3.3822 -11.2553 -0.6305 20 1 4.7613 -10.7136 -0.7298 21 1 3.2857 -12.1488 0.5516 22 1 3.0622 -12.0244 -1.8599 23 1 -0.3633 -0.1182 1.0208 24 1 -0.3634 0.9431 -0.4080 25 1 -0.3633 -0.8250 -0.6128 26 1 1.3280 2.7170 0.8841 27 1 4.1289 2.1323 -0.0001 28 1 5.3646 0.0061 -0.0005 29 1 4.1485 -2.1302 0.0107 30 1 3.1112 -3.6453 -0.2107 31 1 0.8749 -5.0306 0.8171 32 1 0.7127 -4.9386 -0.9531 33 1 2.9521 -5.9703 -1.2126 34 1 3.1149 -6.0627 0.5575 35 1 1.1076 -7.5137 0.6672 36 1 0.9442 -7.4219 -1.1028 37 1 0.5635 -11.0084 -0.3572 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125615926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:43 Heat of formation + Delta-G solvation = -94.907364 kcal Electronic energy + Delta-G solvation = -18739.132293 eV Core-core repulsion = 15672.936078 eV Total energy + Delta-G solvation = -3066.196215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.56580 -40.00880 -37.49231 -37.05323 -35.28073 -33.50963 -33.22522 -31.15748 -28.68489 -27.80144 -25.47267 -24.22488 -22.64503 -22.22933 -21.47094 -19.48359 -18.56340 -17.80222 -17.37146 -16.79083 -16.63351 -16.54858 -16.24490 -16.02266 -15.48727 -14.89142 -14.32531 -14.22114 -14.09324 -13.78450 -13.52017 -13.30606 -13.19436 -12.88135 -12.76687 -12.62217 -12.47112 -12.33528 -11.69359 -11.67708 -11.53720 -11.20854 -10.65959 -10.56349 -10.24820 -9.83583 -9.57975 -8.19738 -6.31227 -0.22643 0.23175 1.42094 1.42153 1.55435 1.77265 2.09979 2.42502 2.70094 3.14259 3.26857 3.64938 3.81628 3.96314 4.07817 4.16733 4.20126 4.41359 4.53757 4.70643 4.73556 4.75789 4.79933 4.93095 4.95992 5.15787 5.20420 5.27331 5.34637 5.39592 5.50068 5.53151 5.70122 5.76910 5.83994 6.21892 6.51247 6.81698 6.86629 7.16594 7.38565 8.92651 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044621 B = 0.003098 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.361940 B = 9036.172280 C = 9625.722570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 C 0.089 3.911 4 O -0.502 6.502 5 C -0.112 4.112 6 C -0.110 4.110 7 C -0.091 4.091 8 C -0.142 4.142 9 C 0.546 3.454 10 O -0.572 6.572 11 N -0.709 5.709 12 C 0.130 3.870 13 C -0.102 4.102 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.281 1.281 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.409 0.591 27 H 0.159 0.841 28 H 0.168 0.832 29 H 0.151 0.849 30 H 0.414 0.586 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.070 0.930 35 H -0.008 1.008 36 H -0.008 1.008 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.986 24.655 2.179 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.075 4.075 3 C 0.044 3.956 4 O -0.314 6.314 5 C -0.131 4.131 6 C -0.128 4.128 7 C -0.109 4.109 8 C -0.145 4.145 9 C 0.336 3.664 10 O -0.453 6.453 11 N -0.361 5.361 12 C 0.006 3.994 13 C -0.140 4.140 14 C -0.014 4.014 15 C -0.578 4.578 16 H 0.086 0.914 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.268 0.732 27 H 0.177 0.823 28 H 0.186 0.814 29 H 0.168 0.832 30 H 0.252 0.748 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.011 0.989 36 H 0.010 0.990 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.044 24.437 1.658 25.780 hybrid contribution 0.118 -1.106 0.396 1.181 sum 8.162 23.331 2.054 24.802 Atomic orbital electron populations 1.20836 0.90458 1.02797 1.02799 1.20487 0.97340 0.92025 0.97621 1.18253 0.90533 0.84493 1.02313 1.84771 1.76506 1.34740 1.35418 1.21949 0.92632 1.00619 0.97860 1.21372 1.01960 0.90520 0.98920 1.21637 0.91637 1.00691 0.96958 1.19660 0.94761 0.91629 1.08473 1.18741 0.86944 0.84666 0.76099 1.90713 1.15452 1.87749 1.51388 1.45900 1.11662 1.05127 1.73430 1.21271 0.95118 0.82141 1.00833 1.21605 0.97518 0.92706 1.02151 1.18946 0.95182 0.92229 0.95093 1.21714 0.94382 0.91987 1.49679 0.91437 1.26035 0.97012 1.02255 0.94878 1.70117 1.15164 1.20754 1.51586 0.85359 0.79341 0.78490 0.77607 1.18082 1.20604 1.20644 0.91300 0.90797 0.91240 0.73192 0.82294 0.81432 0.83176 0.74842 0.92954 0.93125 0.91293 0.91155 0.98923 0.99000 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.89 8.58 71.23 0.61 -2.28 16 2 C -0.07 -1.75 5.93 -19.50 -0.12 -1.86 16 3 C 0.09 1.63 6.67 22.47 0.15 1.78 16 4 O -0.50 -7.75 12.44 -92.55 -1.15 -8.90 16 5 C -0.11 -1.51 9.98 22.42 0.22 -1.29 16 6 C -0.11 -1.36 10.03 22.22 0.22 -1.14 16 7 C -0.09 -1.53 9.52 22.53 0.21 -1.31 16 8 C -0.14 -3.47 5.87 -20.10 -0.12 -3.59 16 9 C 0.55 16.94 7.70 86.79 0.67 17.61 16 10 O -0.57 -21.93 13.34 -3.88 -0.05 -21.98 16 11 N -0.71 -20.16 5.51 -465.97 -2.57 -22.73 16 12 C 0.13 4.63 5.67 86.38 0.49 5.12 16 13 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 14 C 0.02 1.20 4.97 29.85 0.15 1.35 16 15 C -0.54 -29.97 9.11 25.60 0.23 -29.73 16 16 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 17 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 18 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 19 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.07 1.64 7.34 -2.39 -0.02 1.62 16 25 H 0.07 2.19 5.85 -2.39 -0.01 2.18 16 26 H 0.41 2.46 9.06 -74.05 -0.67 1.79 16 27 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 28 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 29 H 0.15 1.83 6.45 -2.91 -0.02 1.81 16 30 H 0.41 8.82 6.54 -92.71 -0.61 8.21 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 35 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -73.81 314.59 1.71 -72.10 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -0.18 Total: 11.62 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 3.35 Total: -18.85 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.28 Total: -79.64 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.20 Total: -30.88 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -73.81 1.71 -72.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125615926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.808 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds