Wall clock time and date at job start Mon Mar 30 2020 06:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86790 * 120.00101 * 2 1 4 4 H 1.48500 * 109.47518 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47269 * 299.99938 * 3 2 1 6 6 H 1.48509 * 109.47271 * 59.99748 * 3 2 1 7 7 C 1.38651 * 119.99687 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99981 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00280 * 359.72319 * 7 2 1 10 10 C 1.35755 * 117.00158 * 174.89773 * 9 7 2 11 11 C 1.38955 * 120.03239 * 185.51003 * 10 9 7 12 12 C 1.38130 * 120.07716 * 179.97438 * 11 10 9 13 13 C 1.38189 * 120.14386 * 0.02562 * 12 11 10 14 14 C 1.38964 * 120.06175 * 0.02861 * 13 12 11 15 15 N 1.39675 * 120.03772 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99826 * 359.97438 * 15 14 13 17 17 C 1.52999 * 109.46754 * 179.97438 * 16 15 14 18 18 H 1.09004 * 109.87110 * 59.30621 * 17 16 15 19 19 C 1.54099 * 109.87632 * 180.30638 * 17 16 15 20 20 C 1.54812 * 104.18704 * 121.46035 * 19 17 16 21 21 C 1.54995 * 102.09088 * 20.87722 * 20 19 17 22 22 O 1.43741 * 109.88298 * 298.29480 * 17 16 15 23 23 C 1.38724 * 120.02728 * 5.23350 * 10 9 7 24 24 H 0.96999 * 120.00035 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.95681 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.92579 * 179.97438 * 12 11 10 27 27 H 1.08001 * 119.96656 * 179.97438 * 13 12 11 28 28 H 0.96997 * 119.99838 * 180.02562 * 15 14 13 29 29 H 1.08993 * 109.47208 * 300.00450 * 16 15 14 30 30 H 1.09003 * 109.46855 * 60.00502 * 16 15 14 31 31 H 1.09007 * 110.49077 * 240.13369 * 19 17 16 32 32 H 1.08995 * 110.49155 * 2.64635 * 19 17 16 33 33 H 1.08993 * 110.90913 * 139.08096 * 20 19 17 34 34 H 1.09005 * 110.90131 * 262.64533 * 20 19 17 35 35 H 1.09000 * 110.61397 * 81.48429 * 21 20 19 36 36 H 1.09007 * 110.61899 * 204.31956 * 21 20 19 37 37 H 1.08000 * 120.07562 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0067 10 6 2.0694 -3.5049 -0.1007 11 6 1.4342 -4.7354 -0.2163 12 6 2.1809 -5.8923 -0.3262 13 6 3.5614 -5.8303 -0.3210 14 6 4.2027 -4.6030 -0.2045 15 7 5.5981 -4.5411 -0.1987 16 6 6.3864 -5.7704 -0.3150 17 6 7.8766 -5.4255 -0.2831 18 1 8.1194 -4.9173 0.6501 19 6 8.7150 -6.7120 -0.4126 20 6 9.5766 -6.4778 -1.6773 21 6 9.5488 -4.9336 -1.8076 22 8 8.2072 -4.5823 -1.3993 23 6 3.4550 -3.4383 -0.1009 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -4.7871 -0.2211 26 1 1.6847 -6.8474 -0.4155 27 1 4.1424 -6.7367 -0.4066 28 1 6.0451 -3.6841 -0.1170 29 1 6.1488 -6.4343 0.5161 30 1 6.1487 -6.2668 -1.2559 31 1 9.3507 -6.8429 0.4632 32 1 8.0668 -7.5782 -0.5451 33 1 10.5944 -6.8372 -1.5266 34 1 9.1241 -6.9505 -2.5491 35 1 10.2821 -4.4790 -1.1415 36 1 9.7304 -4.6321 -2.8393 37 1 3.9510 -2.4827 -0.0160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128050832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:12 Heat of formation + Delta-G solvation = -70.732202 kcal Electronic energy + Delta-G solvation = -19128.041991 eV Core-core repulsion = 16062.894090 eV Total energy + Delta-G solvation = -3065.147901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85648 -40.37045 -38.60222 -36.02056 -34.21364 -33.13583 -31.96736 -30.48513 -29.21317 -27.24257 -25.97857 -23.52548 -23.06589 -22.06552 -21.87637 -19.76139 -18.99460 -17.56148 -17.38229 -16.74184 -16.64035 -16.37186 -16.02381 -15.76438 -15.50123 -15.15012 -14.53759 -14.45141 -14.43537 -14.10350 -13.50224 -13.34748 -13.02181 -12.66220 -12.57127 -12.52199 -12.23967 -12.13669 -12.06118 -12.01691 -11.56283 -11.28299 -10.96468 -10.68009 -10.61153 -9.10243 -8.45835 -8.22906 -6.14138 0.76640 0.92414 1.33544 1.43162 1.52152 2.18341 2.48304 2.88993 2.97959 3.26919 3.59442 3.60863 3.77539 3.97922 4.12990 4.21692 4.25488 4.40747 4.45555 4.61350 4.63031 4.66923 4.74949 4.82183 4.93791 4.98346 5.04509 5.11254 5.14792 5.16631 5.21179 5.46611 5.75625 5.80431 5.93774 6.05236 6.12404 6.60929 6.83562 6.99636 7.82782 8.78081 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.004453 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.529964 B = 6286.706793 C = 7478.344966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.411 4.411 8 H 0.096 0.904 9 O -0.232 6.232 10 C 0.153 3.847 11 C -0.262 4.262 12 C -0.024 4.024 13 C -0.265 4.265 14 C 0.254 3.746 15 N -0.744 5.744 16 C 0.130 3.870 17 C 0.063 3.937 18 H 0.073 0.927 19 C -0.143 4.143 20 C -0.149 4.149 21 C 0.035 3.965 22 O -0.402 6.402 23 C -0.320 4.320 24 H 0.272 0.728 25 H 0.108 0.892 26 H 0.155 0.845 27 H 0.143 0.857 28 H 0.397 0.603 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.080 -14.169 -1.280 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.114 0.886 9 O -0.138 6.138 10 C 0.102 3.898 11 C -0.283 4.283 12 C -0.043 4.043 13 C -0.288 4.288 14 C 0.150 3.850 15 N -0.373 5.373 16 C 0.006 3.994 17 C 0.005 3.995 18 H 0.091 0.909 19 C -0.181 4.181 20 C -0.187 4.187 21 C -0.041 4.041 22 O -0.322 6.322 23 C -0.344 4.344 24 H 0.082 0.918 25 H 0.126 0.874 26 H 0.173 0.827 27 H 0.161 0.839 28 H 0.231 0.769 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 20.643 -14.044 -1.367 25.005 hybrid contribution 0.135 1.351 0.108 1.362 sum 20.778 -12.693 -1.259 24.381 Atomic orbital electron populations 1.70195 1.07942 1.28658 1.49194 1.26572 0.96874 1.02630 0.95950 0.84537 0.78021 0.74933 0.78714 1.17904 1.19174 1.19049 1.21817 0.92344 0.81611 1.53003 0.88624 1.83943 1.35936 1.12618 1.81348 1.19642 0.90725 0.87799 0.91653 1.20278 0.99666 0.90659 1.17660 1.20845 0.93256 0.96917 0.93276 1.20556 0.94602 0.95772 1.17858 1.17609 0.83883 0.92976 0.90579 1.44626 1.01562 1.09498 1.81605 1.21696 0.88885 0.86893 1.01886 1.23067 0.93797 0.92341 0.90269 0.90862 1.22939 0.98648 0.96793 0.99718 1.23121 1.01880 0.95460 0.98194 1.23803 0.83730 0.95316 1.01260 1.88989 1.32769 1.60678 1.49718 1.20516 0.93243 0.98088 1.22522 0.91846 0.87383 0.82737 0.83890 0.76877 0.89715 0.92047 0.88567 0.88999 0.87994 0.90556 0.91284 0.88646 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.49 13.67 21.61 0.30 -58.20 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 44.88 29.55 68.60 2.03 46.90 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.41 -25.33 9.48 67.92 0.64 -24.69 16 8 H 0.10 5.52 5.20 -2.91 -0.02 5.51 16 9 O -0.23 -14.80 9.76 -22.82 -0.22 -15.02 16 10 C 0.15 8.21 6.65 22.56 0.15 8.36 16 11 C -0.26 -12.00 9.99 22.42 0.22 -11.77 16 12 C -0.02 -0.87 10.03 22.23 0.22 -0.65 16 13 C -0.27 -8.98 9.31 22.43 0.21 -8.77 16 14 C 0.25 9.76 6.65 38.20 0.25 10.02 16 15 N -0.74 -22.96 5.65 -339.47 -1.92 -24.88 16 16 C 0.13 2.86 4.39 86.38 0.38 3.24 16 17 C 0.06 1.16 3.49 30.97 0.11 1.26 16 18 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 19 C -0.14 -1.61 6.64 31.58 0.21 -1.40 16 20 C -0.15 -1.58 7.16 31.90 0.23 -1.35 16 21 C 0.03 0.53 7.72 72.66 0.56 1.09 16 22 O -0.40 -9.32 11.05 -148.98 -1.65 -10.96 16 23 C -0.32 -15.32 9.01 22.52 0.20 -15.11 16 24 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 25 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 26 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 27 H 0.14 3.73 6.72 -2.91 -0.02 3.71 16 28 H 0.40 12.46 8.42 -92.71 -0.78 11.68 16 29 H 0.08 1.59 7.95 -2.39 -0.02 1.57 16 30 H 0.06 1.38 7.95 -2.39 -0.02 1.36 16 31 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.09 0.88 7.70 -2.39 -0.02 0.86 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.11 5.42 5.63 -2.91 -0.02 5.40 16 Total: -1.00 -76.57 309.85 2.69 -73.88 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.30 Total: 28.95 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 3.86 Total: -40.68 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -1.62 Total: -83.07 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -1.87 Total: -25.98 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -76.57 2.69 -73.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128050832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.147 kcal (2) G-P(sol) polarization free energy of solvation -76.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds