Wall clock time and date at job start Mon Mar 30 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37733 * 120.04508 * 2 1 4 4 C 1.38967 * 120.08983 * 180.25386 * 3 2 1 5 5 O 1.35712 * 119.91376 * 179.72247 * 4 3 2 6 6 C 1.39020 * 120.17762 * 359.44385 * 4 3 2 7 7 C 1.37679 * 120.08824 * 0.25374 * 6 4 3 8 8 C 1.39717 * 120.04930 * 179.67484 * 2 1 3 9 9 C 1.47599 * 120.08560 * 0.02562 * 8 2 1 10 10 O 1.21583 * 119.99810 * 309.91826 * 9 8 2 11 11 N 1.34775 * 120.00272 * 129.91806 * 9 8 2 12 12 C 1.46499 * 119.99765 * 4.47682 * 11 9 8 13 13 C 1.46497 * 119.99969 * 184.46994 * 11 9 8 14 14 H 1.09001 * 109.47570 * 0.02562 * 13 11 9 15 15 C 1.53008 * 109.46975 * 120.00383 * 13 11 9 16 16 C 1.50703 * 109.47353 * 240.00037 * 13 11 9 17 17 H 1.08000 * 119.99935 * 0.02562 * 16 13 11 18 18 C 1.37872 * 119.99901 * 180.02562 * 16 13 11 19 19 N 1.31516 * 120.00476 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99940 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47250 * 89.99687 * 20 18 16 22 22 H 1.48496 * 109.47106 * 210.00395 * 20 18 16 23 23 H 1.48507 * 109.46891 * 329.99847 * 20 18 16 24 24 H 1.09005 * 109.46759 * 264.86398 * 1 2 3 25 25 H 1.08996 * 109.47113 * 24.85931 * 1 2 3 26 26 H 1.09005 * 109.46950 * 144.86456 * 1 2 3 27 27 H 1.07997 * 119.95494 * 359.97438 * 3 2 1 28 28 H 0.96702 * 113.99576 * 269.72455 * 5 4 3 29 29 H 1.07999 * 119.95809 * 180.27494 * 6 4 3 30 30 H 1.08000 * 120.04647 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47372 * 93.16689 * 12 11 9 32 32 H 1.09003 * 109.46704 * 213.16671 * 12 11 9 33 33 H 1.09002 * 109.47142 * 333.16557 * 12 11 9 34 34 H 1.09000 * 109.46664 * 180.02562 * 15 13 11 35 35 H 1.09003 * 109.46881 * 300.00129 * 15 13 11 36 36 H 1.09001 * 109.46745 * 59.99772 * 15 13 11 37 37 H 0.97001 * 120.00168 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1923 0.0000 4 6 3.5863 1.1934 -0.0053 5 8 4.2621 2.3702 -0.0110 6 6 4.2860 -0.0078 0.0010 7 6 3.6042 -1.2039 0.0073 8 6 2.2066 -1.2094 0.0069 9 6 1.4716 -2.4893 0.0136 10 8 0.5827 -2.6756 0.8218 11 7 1.7859 -3.4516 -0.8763 12 6 2.9201 -3.2668 -1.7849 13 6 0.9933 -4.6823 -0.9347 14 1 0.1988 -4.6386 -0.1898 15 6 0.3780 -4.8269 -2.3281 16 6 1.8822 -5.8661 -0.6529 17 1 2.9324 -5.7167 -0.4500 18 6 1.3548 -7.1400 -0.6540 19 7 0.0760 -7.3221 -0.9015 20 14 2.4565 -8.6074 -0.3039 21 1 2.4675 -8.8811 1.1555 22 1 1.9404 -9.7974 -1.0269 23 1 3.8374 -8.3101 -0.7623 24 1 -0.3633 -0.0920 1.0236 25 1 -0.3633 0.9324 -0.4320 26 1 -0.3633 -0.8405 -0.5915 27 1 1.6566 2.1275 -0.0004 28 1 4.4582 2.7068 -0.8961 29 1 5.3660 -0.0028 0.0013 30 1 4.1485 -2.1367 0.0126 31 1 3.8146 -3.7062 -1.3435 32 1 2.7069 -3.7549 -2.7359 33 1 3.0826 -2.2019 -1.9513 34 1 -0.2121 -5.7423 -2.3714 35 1 -0.2649 -3.9706 -2.5320 36 1 1.1723 -4.8704 -3.0733 37 1 -0.2950 -8.2183 -0.9026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130135614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:20 Heat of formation + Delta-G solvation = -52.327703 kcal Electronic energy + Delta-G solvation = -19983.896648 eV Core-core repulsion = 16919.546826 eV Total energy + Delta-G solvation = -3064.349822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.25015 -38.69744 -36.62545 -35.36501 -33.03985 -32.37647 -30.48938 -28.88212 -27.02470 -26.17237 -25.23152 -23.39372 -21.95714 -20.84536 -18.75585 -18.10989 -16.86772 -16.41941 -15.93487 -15.60140 -15.31695 -14.63679 -14.22969 -14.03510 -13.44350 -13.31215 -13.05111 -12.79229 -12.60794 -12.23356 -11.93627 -11.90129 -11.63490 -11.56346 -11.26055 -11.06058 -10.84008 -10.73240 -10.50596 -10.26122 -10.17232 -9.19964 -9.06115 -8.81802 -8.50374 -8.41988 -7.61321 -6.08130 -4.16082 0.99192 1.32877 3.19587 3.26942 3.33586 3.35329 3.70460 3.97063 4.08144 4.39538 4.84463 4.84988 5.03077 5.20568 5.23625 5.43039 5.57259 5.73317 5.78641 5.86120 5.90204 6.05053 6.18460 6.28412 6.32477 6.33080 6.56499 6.71522 6.74712 6.80642 7.02924 7.40537 7.49008 7.51935 7.69872 7.99452 8.17606 8.48723 8.81109 9.00441 9.50408 10.97183 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031760 B = 0.005111 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.399324 B = 5477.196585 C = 5931.184300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.024 4.024 3 C -0.154 4.154 4 C 0.116 3.884 5 O -0.500 6.500 6 C -0.158 4.158 7 C -0.069 4.069 8 C -0.124 4.124 9 C 0.546 3.454 10 O -0.542 6.542 11 N -0.585 5.585 12 C 0.083 3.917 13 C 0.257 3.743 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.131 0.869 28 H 0.389 0.611 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.011 0.989 36 H 0.031 0.969 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 15.151 -3.470 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.025 4.025 3 C -0.173 4.173 4 C 0.071 3.929 5 O -0.310 6.310 6 C -0.177 4.177 7 C -0.088 4.088 8 C -0.127 4.127 9 C 0.332 3.668 10 O -0.421 6.421 11 N -0.315 5.315 12 C -0.061 4.061 13 C 0.157 3.843 14 H 0.082 0.918 15 C -0.206 4.206 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.245 0.755 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.824 14.797 -2.481 16.094 hybrid contribution 0.856 -0.805 -0.370 1.232 sum 6.680 13.992 -2.851 15.765 Atomic orbital electron populations 1.20835 0.90145 1.02405 1.03673 1.19796 0.96588 0.91016 0.95078 1.21180 0.93302 0.98081 1.04691 1.18583 0.89825 0.85037 0.99421 1.84769 1.76583 1.36258 1.33409 1.21287 1.00455 0.91570 1.04375 1.21304 0.92909 0.98366 0.96208 1.20167 0.93942 0.94193 1.04392 1.18149 0.83505 0.83248 0.81853 1.90752 1.32378 1.80713 1.38254 1.48202 1.30587 1.18750 1.33979 1.21731 0.89494 1.00063 0.94837 1.18981 0.91257 0.78946 0.95070 0.91792 1.22102 0.99398 1.01374 0.97682 1.21296 0.95586 0.90718 1.48731 0.92291 1.24887 0.95133 0.98833 0.94897 1.69873 1.11665 1.22290 1.48797 0.86489 0.80539 0.81869 0.78449 1.20599 1.21120 1.19936 0.89990 0.91843 0.90808 0.85160 0.75485 0.85151 0.84668 0.93113 0.91055 0.92405 0.88695 0.96978 0.95038 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 8.88 36.00 0.32 -1.32 16 2 C -0.02 -0.36 5.91 -104.26 -0.62 -0.97 16 3 C -0.15 -1.94 9.60 -39.50 -0.38 -2.32 16 4 C 0.12 1.39 6.71 -39.02 -0.26 1.13 16 5 O -0.50 -5.01 13.49 -18.84 -0.25 -5.26 16 6 C -0.16 -1.93 9.97 -39.50 -0.39 -2.32 16 7 C -0.07 -0.99 7.62 -39.22 -0.30 -1.29 16 8 C -0.12 -2.10 4.86 -104.96 -0.51 -2.61 16 9 C 0.55 11.62 6.29 -12.44 -0.08 11.54 16 10 O -0.54 -13.51 15.20 5.29 0.08 -13.43 16 11 N -0.58 -12.56 2.75 -176.46 -0.49 -13.05 16 12 C 0.08 1.40 8.38 59.85 0.50 1.90 16 13 C 0.26 6.55 2.63 -69.08 -0.18 6.37 16 14 H 0.06 1.89 6.91 -51.93 -0.36 1.53 16 15 C -0.15 -3.48 8.94 37.16 0.33 -3.15 16 16 C -0.52 -14.15 8.37 -34.44 -0.29 -14.43 16 17 H 0.06 1.57 7.56 -52.49 -0.40 1.17 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.00 11.32 55.43 0.63 -24.38 16 20 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 26 H 0.07 1.21 7.09 -51.93 -0.37 0.84 16 27 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.39 1.90 9.06 45.56 0.41 2.31 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.14 1.86 6.67 -52.49 -0.35 1.51 16 31 H 0.05 0.82 7.50 -51.93 -0.39 0.43 16 32 H 0.07 1.21 6.44 -51.93 -0.33 0.87 16 33 H 0.06 0.83 5.70 -51.93 -0.30 0.53 16 34 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -32.07 305.52 -6.38 -38.45 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.99 Total: 2.87 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.95 Total: -5.80 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.14 Total: -37.42 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.17 Total: -18.69 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.07 -6.38 -38.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130135614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.873 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds