Wall clock time and date at job start Mon Mar 30 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37733 * 120.04508 * 2 1 4 4 C 1.38967 * 120.08983 * 180.25386 * 3 2 1 5 5 O 1.35712 * 119.91376 * 179.72247 * 4 3 2 6 6 C 1.39020 * 120.17762 * 359.44385 * 4 3 2 7 7 C 1.37679 * 120.08824 * 0.25374 * 6 4 3 8 8 C 1.39717 * 120.04930 * 179.67484 * 2 1 3 9 9 C 1.47599 * 120.08560 * 0.02562 * 8 2 1 10 10 O 1.21583 * 119.99810 * 309.91826 * 9 8 2 11 11 N 1.34775 * 120.00272 * 129.91806 * 9 8 2 12 12 C 1.46499 * 119.99765 * 4.47682 * 11 9 8 13 13 C 1.46497 * 119.99969 * 184.46994 * 11 9 8 14 14 H 1.09001 * 109.47570 * 0.02562 * 13 11 9 15 15 C 1.53008 * 109.46975 * 120.00383 * 13 11 9 16 16 C 1.50703 * 109.47353 * 240.00037 * 13 11 9 17 17 H 1.08000 * 119.99935 * 0.02562 * 16 13 11 18 18 C 1.37872 * 119.99901 * 180.02562 * 16 13 11 19 19 N 1.31516 * 120.00476 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99940 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47250 * 89.99687 * 20 18 16 22 22 H 1.48496 * 109.47106 * 210.00395 * 20 18 16 23 23 H 1.48507 * 109.46891 * 329.99847 * 20 18 16 24 24 H 1.09005 * 109.46759 * 264.86398 * 1 2 3 25 25 H 1.08996 * 109.47113 * 24.85931 * 1 2 3 26 26 H 1.09005 * 109.46950 * 144.86456 * 1 2 3 27 27 H 1.07997 * 119.95494 * 359.97438 * 3 2 1 28 28 H 0.96702 * 113.99576 * 269.72455 * 5 4 3 29 29 H 1.07999 * 119.95809 * 180.27494 * 6 4 3 30 30 H 1.08000 * 120.04647 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47372 * 93.16689 * 12 11 9 32 32 H 1.09003 * 109.46704 * 213.16671 * 12 11 9 33 33 H 1.09002 * 109.47142 * 333.16557 * 12 11 9 34 34 H 1.09000 * 109.46664 * 180.02562 * 15 13 11 35 35 H 1.09003 * 109.46881 * 300.00129 * 15 13 11 36 36 H 1.09001 * 109.46745 * 59.99772 * 15 13 11 37 37 H 0.97001 * 120.00168 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1923 0.0000 4 6 3.5863 1.1934 -0.0053 5 8 4.2621 2.3702 -0.0110 6 6 4.2860 -0.0078 0.0010 7 6 3.6042 -1.2039 0.0073 8 6 2.2066 -1.2094 0.0069 9 6 1.4716 -2.4893 0.0136 10 8 0.5827 -2.6756 0.8218 11 7 1.7859 -3.4516 -0.8763 12 6 2.9201 -3.2668 -1.7849 13 6 0.9933 -4.6823 -0.9347 14 1 0.1988 -4.6386 -0.1898 15 6 0.3780 -4.8269 -2.3281 16 6 1.8822 -5.8661 -0.6529 17 1 2.9324 -5.7167 -0.4500 18 6 1.3548 -7.1400 -0.6540 19 7 0.0760 -7.3221 -0.9015 20 14 2.4565 -8.6074 -0.3039 21 1 2.4675 -8.8811 1.1555 22 1 1.9404 -9.7974 -1.0269 23 1 3.8374 -8.3101 -0.7623 24 1 -0.3633 -0.0920 1.0236 25 1 -0.3633 0.9324 -0.4320 26 1 -0.3633 -0.8405 -0.5915 27 1 1.6566 2.1275 -0.0004 28 1 4.4582 2.7068 -0.8961 29 1 5.3660 -0.0028 0.0013 30 1 4.1485 -2.1367 0.0126 31 1 3.8146 -3.7062 -1.3435 32 1 2.7069 -3.7549 -2.7359 33 1 3.0826 -2.2019 -1.9513 34 1 -0.2121 -5.7423 -2.3714 35 1 -0.2649 -3.9706 -2.5320 36 1 1.1723 -4.8704 -3.0733 37 1 -0.2950 -8.2183 -0.9026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130135614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:20 Heat of formation + Delta-G solvation = -74.451177 kcal Electronic energy + Delta-G solvation = -19984.855994 eV Core-core repulsion = 16919.546826 eV Total energy + Delta-G solvation = -3065.309168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.52480 -39.98817 -37.70416 -37.11783 -34.88051 -33.55547 -32.00860 -30.38117 -28.18721 -27.64727 -27.29779 -24.68994 -23.20745 -22.27104 -20.32613 -18.99416 -18.59392 -18.07948 -17.48392 -16.95608 -16.56064 -16.18404 -15.74284 -15.30587 -14.87964 -14.53603 -14.40619 -14.22845 -14.05050 -13.57017 -13.48574 -13.23710 -13.15343 -12.94766 -12.73135 -12.70294 -12.64818 -12.44763 -12.18476 -12.10968 -11.42157 -11.19812 -10.75456 -10.51413 -9.85381 -9.60028 -9.34820 -8.15133 -6.31882 -0.09700 0.30805 1.41218 1.42794 1.52529 1.77687 2.26332 2.45010 2.64617 3.12821 3.21302 3.63711 3.82833 3.87134 4.23491 4.38581 4.40834 4.56694 4.64739 4.67642 4.70595 4.75878 4.86752 4.92409 4.98566 5.03301 5.13498 5.24172 5.34223 5.42463 5.48526 5.61702 5.65432 5.75807 6.01460 6.14487 6.74808 6.76446 6.87829 7.27067 7.43780 8.89279 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031760 B = 0.005111 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.399324 B = 5477.196585 C = 5931.184300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.034 4.034 3 C -0.150 4.150 4 C 0.135 3.865 5 O -0.502 6.502 6 C -0.151 4.151 7 C -0.069 4.069 8 C -0.153 4.153 9 C 0.541 3.459 10 O -0.595 6.595 11 N -0.592 5.592 12 C 0.082 3.918 13 C 0.261 3.739 14 H 0.010 0.990 15 C -0.132 4.132 16 C -0.538 4.538 17 H 0.060 0.940 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.965 3.035 21 H -0.283 1.283 22 H -0.279 1.279 23 H -0.261 1.261 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.042 0.958 27 H 0.156 0.844 28 H 0.416 0.584 29 H 0.160 0.840 30 H 0.137 0.863 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.020 0.980 36 H 0.049 0.951 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.256 17.153 -4.271 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.035 4.035 3 C -0.168 4.168 4 C 0.090 3.910 5 O -0.316 6.316 6 C -0.169 4.169 7 C -0.088 4.088 8 C -0.156 4.156 9 C 0.330 3.670 10 O -0.478 6.478 11 N -0.321 5.321 12 C -0.060 4.060 13 C 0.159 3.841 14 H 0.027 0.973 15 C -0.191 4.191 16 C -0.577 4.577 17 H 0.079 0.921 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.790 3.210 21 H -0.209 1.209 22 H -0.205 1.205 23 H -0.185 1.185 24 H 0.086 0.914 25 H 0.117 0.883 26 H 0.061 0.939 27 H 0.174 0.826 28 H 0.277 0.723 29 H 0.177 0.823 30 H 0.155 0.845 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.644 16.834 -3.329 19.215 hybrid contribution 0.026 -1.270 -0.106 1.275 sum 8.670 15.564 -3.435 18.144 Atomic orbital electron populations 1.20790 0.90504 1.02883 1.02553 1.19885 0.96622 0.91352 0.95604 1.21379 0.93870 0.97876 1.03714 1.18628 0.89635 0.85753 0.96994 1.84713 1.76036 1.35103 1.35751 1.21530 1.01799 0.90603 1.03010 1.21324 0.91615 0.99622 0.96233 1.19872 0.94938 0.92256 1.08554 1.18894 0.82960 0.84524 0.80634 1.90704 1.34896 1.81884 1.40275 1.48185 1.31375 1.17638 1.34940 1.21936 0.88007 1.02256 0.93788 1.18588 0.90490 0.80696 0.94314 0.97252 1.21881 0.99579 1.00427 0.97178 1.21552 0.95739 0.91512 1.48888 0.92149 1.25734 0.96440 1.01634 0.94600 1.70017 1.13290 1.22902 1.49405 0.85447 0.79261 0.78382 0.77872 1.20941 1.20456 1.18486 0.91369 0.88302 0.93908 0.82612 0.72320 0.82291 0.84487 0.92201 0.91017 0.89350 0.91180 0.96109 0.93240 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.21 8.88 71.24 0.63 -2.58 16 2 C -0.03 -0.97 5.91 -19.63 -0.12 -1.09 16 3 C -0.15 -3.28 9.60 22.33 0.21 -3.07 16 4 C 0.13 2.66 6.71 22.63 0.15 2.81 16 5 O -0.50 -7.46 13.49 -90.33 -1.22 -8.67 16 6 C -0.15 -3.09 9.97 22.32 0.22 -2.87 16 7 C -0.07 -1.85 7.62 22.50 0.17 -1.68 16 8 C -0.15 -5.14 4.86 -20.08 -0.10 -5.24 16 9 C 0.54 23.98 6.29 86.71 0.55 24.53 16 10 O -0.59 -31.81 15.20 -3.98 -0.06 -31.87 16 11 N -0.59 -26.13 2.75 -830.48 -2.29 -28.42 16 12 C 0.08 2.72 8.38 127.77 1.07 3.79 16 13 C 0.26 13.89 2.63 44.25 0.12 14.01 16 14 H 0.01 0.60 6.91 -2.39 -0.02 0.59 16 15 C -0.13 -6.45 8.94 71.98 0.64 -5.81 16 16 C -0.54 -29.68 8.37 25.60 0.21 -29.47 16 17 H 0.06 3.23 7.56 -2.91 -0.02 3.21 16 18 C 0.02 0.86 5.30 84.65 0.45 1.31 16 19 N -0.92 -53.25 11.32 21.45 0.24 -53.01 16 20 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 24 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 25 H 0.10 2.05 8.05 -2.39 -0.02 2.03 16 26 H 0.04 1.48 7.09 -2.38 -0.02 1.46 16 27 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.42 1.75 9.06 -74.06 -0.67 1.07 16 29 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.14 3.53 6.67 -2.91 -0.02 3.51 16 31 H 0.06 1.86 7.50 -2.39 -0.02 1.84 16 32 H 0.07 2.34 6.44 -2.39 -0.02 2.33 16 33 H 0.09 2.37 5.70 -2.39 -0.01 2.36 16 34 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 35 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 2.18 6.68 -2.39 -0.02 2.16 16 37 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -73.21 305.52 3.35 -69.87 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.42 Total: 12.12 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 4.22 Total: -5.35 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -2.04 Total: -81.43 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.28 Total: -40.55 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -73.21 3.35 -69.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130135614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.584 kcal (2) G-P(sol) polarization free energy of solvation -73.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds