Wall clock time and date at job start Mon Mar 30 2020 06:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99837 * 2 1 4 4 H 1.48504 * 109.47164 * 269.99909 * 3 2 1 5 5 H 1.48495 * 109.47500 * 29.99977 * 3 2 1 6 6 H 1.48497 * 109.47072 * 150.00053 * 3 2 1 7 7 C 1.37876 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99423 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00410 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47236 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.46939 * 179.97438 * 10 9 7 12 12 C 1.34235 * 116.99787 * 180.02562 * 11 10 9 13 13 O 1.20821 * 120.00139 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99929 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47114 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47114 * 179.97438 * 15 14 12 17 17 C 1.38311 * 119.96542 * 270.02404 * 16 15 14 18 18 C 1.38266 * 120.15052 * 179.97438 * 17 16 15 19 19 C 1.38123 * 120.07577 * 359.74818 * 18 17 16 20 20 C 1.38893 * 119.92137 * 0.48472 * 19 18 17 21 21 N 1.39675 * 120.06980 * 179.79253 * 20 19 18 22 22 C 1.38080 * 119.96474 * 90.00088 * 16 15 14 23 23 H 0.97005 * 120.00178 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47158 * 59.99815 * 9 7 2 25 25 H 1.09000 * 109.46699 * 300.00492 * 9 7 2 26 26 H 1.09002 * 109.46851 * 60.00608 * 10 9 7 27 27 H 1.08990 * 109.47345 * 300.00219 * 10 9 7 28 28 H 1.09006 * 109.46849 * 59.99739 * 14 12 11 29 29 H 1.08998 * 109.47331 * 300.00518 * 14 12 11 30 30 H 1.09001 * 109.46867 * 60.00395 * 15 14 12 31 31 H 1.08999 * 109.47174 * 299.99923 * 15 14 12 32 32 H 1.08001 * 119.92073 * 359.97438 * 17 16 15 33 33 H 1.07995 * 119.95964 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.03594 * 180.27150 * 19 18 17 35 35 H 0.97005 * 119.99698 * 179.72216 * 21 20 19 36 36 H 0.97000 * 120.00679 * 359.44613 * 21 20 19 37 37 H 1.08008 * 120.03420 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 8 5.4735 -2.6365 0.0022 12 6 6.0829 -3.8325 0.0027 13 8 5.4249 -4.8458 0.0026 14 6 7.5878 -3.9114 0.0032 15 6 8.0216 -5.3786 0.0043 16 6 9.5266 -5.4574 0.0042 17 6 10.2164 -5.4940 -1.1941 18 6 11.5972 -5.5658 -1.1986 19 6 12.2926 -5.5960 -0.0056 20 6 11.6028 -5.5644 1.1995 21 7 12.3028 -5.5992 2.4077 22 6 10.2154 -5.4926 1.2004 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8912 25 1 3.8751 -0.6803 -0.8888 26 1 3.6586 -3.1509 -0.8876 27 1 3.6578 -3.1497 0.8924 28 1 7.9772 -3.4170 0.8933 29 1 7.9779 -3.4173 -0.8866 30 1 7.6323 -5.8732 -0.8856 31 1 7.6316 -5.8721 0.8944 32 1 9.6752 -5.4663 -2.1283 33 1 12.1326 -5.5946 -2.1360 34 1 13.3714 -5.6477 -0.0099 35 1 11.8201 -5.5730 3.2487 36 1 13.2713 -5.6537 2.4058 37 1 9.6761 -5.4641 2.1358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130717881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:45 Heat of formation + Delta-G solvation = -84.439323 kcal Electronic energy + Delta-G solvation = -18303.925402 eV Core-core repulsion = 15238.183115 eV Total energy + Delta-G solvation = -3065.742286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.14931 -39.53594 -36.39601 -35.29363 -33.48806 -33.27175 -30.88489 -30.07184 -28.72762 -25.86186 -24.44532 -22.52575 -21.39620 -20.66701 -20.21341 -17.63569 -17.17788 -16.92384 -16.46242 -16.28908 -16.03091 -15.70562 -14.83157 -14.22282 -13.93481 -13.85226 -13.63576 -13.27876 -12.87804 -12.85885 -12.52858 -12.16717 -11.72584 -11.46701 -11.28765 -11.19696 -11.02889 -10.76539 -10.68505 -10.54923 -9.96106 -9.88775 -9.68222 -9.34046 -8.95128 -8.61850 -7.78745 -6.12415 -4.13562 1.19308 1.42619 2.54856 3.14185 3.28463 3.35748 3.40386 3.56677 3.69226 4.39162 4.59600 4.69848 4.87931 4.95716 5.01291 5.21154 5.22371 5.31904 5.35795 5.49647 5.52719 5.77487 5.82474 5.97864 5.99166 6.01308 6.10670 6.34199 6.46963 6.53937 6.67542 6.83303 7.20932 7.21537 7.23655 7.43833 7.63248 8.16922 8.40392 8.89323 9.47214 11.00157 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037518 B = 0.002876 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.120322 B = 9735.016549 C = 9939.023957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.010 4.010 10 C 0.082 3.918 11 O -0.363 6.363 12 C 0.455 3.545 13 O -0.517 6.517 14 C -0.108 4.108 15 C -0.071 4.071 16 C -0.032 4.032 17 C -0.173 4.173 18 C -0.071 4.071 19 C -0.204 4.204 20 C 0.215 3.785 21 N -0.881 5.881 22 C -0.193 4.193 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.024 0.976 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.398 0.602 36 H 0.396 0.604 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.588 -10.383 1.584 28.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.009 3.991 11 O -0.279 6.279 12 C 0.298 3.702 13 O -0.406 6.406 14 C -0.146 4.146 15 C -0.108 4.108 16 C -0.033 4.033 17 C -0.193 4.193 18 C -0.089 4.089 19 C -0.227 4.227 20 C 0.110 3.890 21 N -0.420 5.420 22 C -0.215 4.215 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.226 0.774 36 H 0.224 0.776 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 26.153 -10.532 1.553 28.237 hybrid contribution 0.413 0.815 0.344 0.976 sum 26.566 -9.717 1.896 28.351 Atomic orbital electron populations 1.69898 1.06286 1.27198 1.50160 1.24942 0.94773 0.99200 0.94136 0.86741 0.80416 0.83244 0.78745 1.20049 1.21191 1.18756 1.20852 0.88322 0.95035 1.52325 0.90663 1.19624 0.96985 0.90248 0.97859 1.23366 0.72439 1.01506 1.01746 1.86490 1.26236 1.32371 1.82818 1.23578 0.91842 0.82072 0.72718 1.90642 1.67522 1.36645 1.45781 1.21324 0.88579 0.98668 1.06001 1.20428 0.90668 0.94930 1.04806 1.19571 0.94869 0.96136 0.92703 1.20865 0.94140 1.06778 0.97503 1.20865 0.94111 0.96709 0.97245 1.20558 0.99280 1.11459 0.91355 1.17765 0.91309 0.93409 0.86479 1.42480 1.09050 1.85244 1.05223 1.20494 0.91945 1.10822 0.98274 0.92442 0.95414 0.95811 0.91742 0.91733 0.87842 0.87689 0.89787 0.89994 0.86182 0.86176 0.86560 0.77427 0.77569 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.53 -15.12 9.66 -34.44 -0.33 -15.45 16 8 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 9 C -0.01 -0.24 4.42 -27.89 -0.12 -0.36 16 10 C 0.08 1.78 5.40 37.16 0.20 1.98 16 11 O -0.36 -6.92 10.22 -39.27 -0.40 -7.32 16 12 C 0.45 7.52 7.96 36.01 0.29 7.81 16 13 O -0.52 -9.89 15.73 -18.75 -0.29 -10.19 16 14 C -0.11 -1.25 5.79 -27.88 -0.16 -1.41 16 15 C -0.07 -0.76 4.63 -27.88 -0.13 -0.89 16 16 C -0.03 -0.32 5.13 -104.65 -0.54 -0.86 16 17 C -0.17 -1.64 9.70 -39.54 -0.38 -2.02 16 18 C -0.07 -0.61 10.04 -39.61 -0.40 -1.01 16 19 C -0.20 -1.72 9.90 -39.38 -0.39 -2.11 16 20 C 0.21 1.86 6.75 -83.79 -0.57 1.30 16 21 N -0.88 -5.19 9.09 32.41 0.29 -4.89 16 22 C -0.19 -1.83 9.55 -39.38 -0.38 -2.21 16 23 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 25 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 26 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 27 H 0.06 1.41 8.13 -51.93 -0.42 0.98 16 28 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 31 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.40 1.83 8.84 -40.82 -0.36 1.47 16 36 H 0.40 1.61 8.84 -40.82 -0.36 1.25 16 37 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 321.24 15.07 4.84 4.84 Total: -1.00 -32.94 321.24 -7.75 -40.69 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.29 Total: -0.01 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.01 Total: -13.25 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 1.07 Total: -31.62 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.70 Total: -17.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.94 -7.75 -40.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130717881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.750 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds