Wall clock time and date at job start Mon Mar 30 2020 06:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99837 * 2 1 4 4 H 1.48504 * 109.47164 * 269.99909 * 3 2 1 5 5 H 1.48495 * 109.47500 * 29.99977 * 3 2 1 6 6 H 1.48497 * 109.47072 * 150.00053 * 3 2 1 7 7 C 1.37876 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99423 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00410 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47236 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.46939 * 179.97438 * 10 9 7 12 12 C 1.34235 * 116.99787 * 180.02562 * 11 10 9 13 13 O 1.20821 * 120.00139 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99929 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47114 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47114 * 179.97438 * 15 14 12 17 17 C 1.38311 * 119.96542 * 270.02404 * 16 15 14 18 18 C 1.38266 * 120.15052 * 179.97438 * 17 16 15 19 19 C 1.38123 * 120.07577 * 359.74818 * 18 17 16 20 20 C 1.38893 * 119.92137 * 0.48472 * 19 18 17 21 21 N 1.39675 * 120.06980 * 179.79253 * 20 19 18 22 22 C 1.38080 * 119.96474 * 90.00088 * 16 15 14 23 23 H 0.97005 * 120.00178 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47158 * 59.99815 * 9 7 2 25 25 H 1.09000 * 109.46699 * 300.00492 * 9 7 2 26 26 H 1.09002 * 109.46851 * 60.00608 * 10 9 7 27 27 H 1.08990 * 109.47345 * 300.00219 * 10 9 7 28 28 H 1.09006 * 109.46849 * 59.99739 * 14 12 11 29 29 H 1.08998 * 109.47331 * 300.00518 * 14 12 11 30 30 H 1.09001 * 109.46867 * 60.00395 * 15 14 12 31 31 H 1.08999 * 109.47174 * 299.99923 * 15 14 12 32 32 H 1.08001 * 119.92073 * 359.97438 * 17 16 15 33 33 H 1.07995 * 119.95964 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.03594 * 180.27150 * 19 18 17 35 35 H 0.97005 * 119.99698 * 179.72216 * 21 20 19 36 36 H 0.97000 * 120.00679 * 359.44613 * 21 20 19 37 37 H 1.08008 * 120.03420 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 8 5.4735 -2.6365 0.0022 12 6 6.0829 -3.8325 0.0027 13 8 5.4249 -4.8458 0.0026 14 6 7.5878 -3.9114 0.0032 15 6 8.0216 -5.3786 0.0043 16 6 9.5266 -5.4574 0.0042 17 6 10.2164 -5.4940 -1.1941 18 6 11.5972 -5.5658 -1.1986 19 6 12.2926 -5.5960 -0.0056 20 6 11.6028 -5.5644 1.1995 21 7 12.3028 -5.5992 2.4077 22 6 10.2154 -5.4926 1.2004 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8912 25 1 3.8751 -0.6803 -0.8888 26 1 3.6586 -3.1509 -0.8876 27 1 3.6578 -3.1497 0.8924 28 1 7.9772 -3.4170 0.8933 29 1 7.9779 -3.4173 -0.8866 30 1 7.6323 -5.8732 -0.8856 31 1 7.6316 -5.8721 0.8944 32 1 9.6752 -5.4663 -2.1283 33 1 12.1326 -5.5946 -2.1360 34 1 13.3714 -5.6477 -0.0099 35 1 11.8201 -5.5730 3.2487 36 1 13.2713 -5.6537 2.4058 37 1 9.6761 -5.4641 2.1358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130717881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:45 Heat of formation + Delta-G solvation = -104.585702 kcal Electronic energy + Delta-G solvation = -18304.799014 eV Core-core repulsion = 15238.183115 eV Total energy + Delta-G solvation = -3066.615899 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.49688 -40.27235 -37.85934 -36.04008 -35.39420 -34.21946 -32.80502 -30.96998 -29.37128 -27.46357 -25.74743 -23.18563 -22.74474 -22.18044 -21.32780 -19.26443 -18.45317 -17.86654 -17.60078 -17.44914 -17.15521 -16.62866 -16.27577 -15.83779 -15.05013 -14.94694 -14.52958 -14.43534 -14.13773 -14.04853 -13.74295 -13.28239 -13.22189 -12.99700 -12.47798 -12.41581 -12.38973 -12.01742 -11.81113 -11.77969 -11.56307 -11.45403 -11.42461 -11.30446 -10.81440 -9.63829 -8.36346 -8.34695 -6.43097 0.51531 0.77322 1.21134 1.38526 1.40217 1.53102 1.78754 2.34538 3.00116 3.00706 3.08021 3.61756 3.97275 3.98372 4.16080 4.17393 4.21795 4.24122 4.40776 4.58088 4.61038 4.64319 4.69909 4.81492 5.06702 5.07275 5.12260 5.21353 5.28749 5.46745 5.50511 5.60509 5.70254 5.85903 6.06763 6.15241 6.62985 6.66780 6.75330 7.04689 7.22110 8.81437 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037518 B = 0.002876 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.120322 B = 9735.016549 C = 9939.023957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.244 1.244 7 C -0.544 4.544 8 H 0.034 0.966 9 C -0.004 4.004 10 C 0.092 3.908 11 O -0.363 6.363 12 C 0.453 3.547 13 O -0.546 6.546 14 C -0.095 4.095 15 C -0.064 4.064 16 C -0.041 4.041 17 C -0.188 4.188 18 C -0.075 4.075 19 C -0.211 4.211 20 C 0.208 3.792 21 N -0.872 5.872 22 C -0.208 4.208 23 H 0.271 0.729 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.404 0.596 36 H 0.406 0.594 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.769 -9.338 1.662 31.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.167 1.167 7 C -0.582 4.582 8 H 0.052 0.948 9 C -0.041 4.041 10 C 0.019 3.981 11 O -0.280 6.280 12 C 0.299 3.701 13 O -0.437 6.437 14 C -0.133 4.133 15 C -0.102 4.102 16 C -0.041 4.041 17 C -0.208 4.208 18 C -0.093 4.093 19 C -0.234 4.234 20 C 0.103 3.897 21 N -0.412 5.412 22 C -0.230 4.230 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.233 0.767 36 H 0.236 0.764 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 29.371 -9.510 1.649 30.917 hybrid contribution -0.552 0.353 0.338 0.737 sum 28.820 -9.157 1.986 30.305 Atomic orbital electron populations 1.70045 1.08355 1.28650 1.51376 1.25976 0.95691 1.03655 0.93393 0.85577 0.79507 0.77550 0.79568 1.18740 1.20600 1.16708 1.21129 0.90797 0.93780 1.52448 0.94756 1.19464 0.94112 0.92056 0.98487 1.22921 0.74465 0.99720 1.01013 1.86482 1.24246 1.33950 1.83305 1.24616 0.93580 0.80750 0.71201 1.90636 1.68548 1.37378 1.47107 1.21453 0.84235 0.99679 1.07888 1.20333 0.91505 0.94227 1.04095 1.19493 0.94086 0.97258 0.93303 1.21029 0.94801 1.07351 0.97575 1.21142 0.93919 0.95993 0.98288 1.20853 1.00348 1.10972 0.91220 1.17917 0.91271 0.93006 0.87515 1.42480 1.09643 1.84336 1.04752 1.20627 0.92590 1.11468 0.98353 0.92036 0.94626 0.94703 0.92565 0.92582 0.85787 0.85585 0.90535 0.90782 0.85620 0.84281 0.84755 0.76685 0.76431 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.96 43.55 27.47 68.60 1.88 45.43 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 7 C -0.54 -31.78 9.66 25.60 0.25 -31.54 16 8 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 9 C 0.00 -0.18 4.42 29.85 0.13 -0.05 16 10 C 0.09 4.01 5.40 71.98 0.39 4.40 16 11 O -0.36 -13.39 10.22 -51.47 -0.53 -13.92 16 12 C 0.45 14.53 7.96 71.24 0.57 15.10 16 13 O -0.55 -20.94 15.73 21.98 0.35 -20.59 16 14 C -0.10 -2.01 5.79 29.85 0.17 -1.84 16 15 C -0.06 -1.31 4.63 29.85 0.14 -1.17 16 16 C -0.04 -0.76 5.13 -19.88 -0.10 -0.86 16 17 C -0.19 -3.26 9.70 22.29 0.22 -3.04 16 18 C -0.07 -1.13 10.04 22.25 0.22 -0.91 16 19 C -0.21 -3.07 9.90 22.40 0.22 -2.85 16 20 C 0.21 3.20 6.75 38.21 0.26 3.46 16 21 N -0.87 -8.36 9.09 -51.37 -0.47 -8.83 16 22 C -0.21 -3.63 9.55 22.40 0.21 -3.41 16 23 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 24 H 0.04 1.65 7.20 -2.38 -0.02 1.64 16 25 H 0.03 1.60 7.57 -2.39 -0.02 1.58 16 26 H 0.06 2.50 8.13 -2.39 -0.02 2.48 16 27 H 0.06 2.50 8.13 -2.39 -0.02 2.48 16 28 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 1.66 8.04 -2.39 -0.02 1.64 16 31 H 0.07 1.61 8.04 -2.39 -0.02 1.60 16 32 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.13 1.39 8.06 -2.91 -0.02 1.36 16 35 H 0.40 2.91 8.84 -92.70 -0.82 2.09 16 36 H 0.41 2.33 8.84 -92.71 -0.82 1.51 16 37 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -71.37 321.24 4.06 -67.31 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -0.61 Total: 10.96 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 3.14 Total: -21.61 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -0.17 Total: -67.58 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.18 Total: -34.51 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Total: -71.37 4.06 -67.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130717881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.276 kcal (2) G-P(sol) polarization free energy of solvation -71.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds