Wall clock time and date at job start Mon Mar 30 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50704 * 119.99596 * 2 1 4 4 C 1.33280 * 120.00137 * 179.97438 * 2 1 3 5 5 F 1.35102 * 120.00204 * 184.78444 * 4 2 1 6 6 C 1.47099 * 119.99910 * 4.78763 * 4 2 1 7 7 O 1.21648 * 120.00396 * 93.86569 * 6 4 2 8 8 N 1.34777 * 119.99811 * 273.86076 * 6 4 2 9 9 C 1.36866 * 119.99977 * 4.18563 * 8 6 4 10 10 H 1.08004 * 120.00494 * 58.94319 * 9 8 6 11 11 C 1.39007 * 119.99789 * 238.93857 * 9 8 6 12 12 N 1.31359 * 119.99776 * 357.30263 * 11 9 8 13 13 Si 1.86797 * 119.99911 * 177.29754 * 11 9 8 14 14 H 1.48504 * 109.47360 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47234 * 119.99995 * 13 11 9 16 16 H 1.48501 * 109.47173 * 240.00176 * 13 11 9 17 17 C 1.39695 * 120.00110 * 184.17793 * 8 6 4 18 18 C 1.38978 * 120.07777 * 174.39171 * 17 8 6 19 19 C 1.38081 * 119.91671 * 179.97438 * 18 17 8 20 20 C 1.38317 * 120.08114 * 359.96925 * 19 18 17 21 21 C 1.38315 * 120.15798 * 0.05528 * 20 19 18 22 22 C 1.38072 * 120.08148 * 359.94685 * 21 20 19 23 23 H 1.09005 * 109.46862 * 185.08908 * 1 2 3 24 24 H 1.08997 * 109.47258 * 305.08626 * 1 2 3 25 25 H 1.08998 * 109.47206 * 65.08952 * 1 2 3 26 26 H 1.08997 * 109.46862 * 269.99752 * 3 2 1 27 27 H 1.08998 * 109.47392 * 30.00167 * 3 2 1 28 28 H 1.09002 * 109.46447 * 150.00146 * 3 2 1 29 29 H 0.97003 * 120.00023 * 184.98955 * 12 11 9 30 30 H 1.08002 * 120.04755 * 359.69964 * 18 17 8 31 31 H 1.08001 * 119.96478 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.92196 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.96105 * 179.97438 * 21 20 19 34 34 H 1.08007 * 120.04323 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1734 -1.1542 0.0005 5 9 3.5209 -1.1562 0.0981 6 6 1.4418 -2.4260 -0.1052 7 8 1.2766 -2.9441 -1.1934 8 7 0.9545 -3.0173 1.0035 9 6 1.0651 -2.3933 2.2167 10 1 0.6259 -1.4177 2.3643 11 6 1.7426 -3.0154 3.2590 12 7 2.2308 -4.2240 3.0962 13 14 1.9589 -2.1325 4.8909 14 1 1.3213 -0.7933 4.8176 15 1 1.3199 -2.9259 5.9714 16 1 3.4069 -1.9767 5.1813 17 6 0.3365 -4.2669 0.9146 18 6 -0.0619 -4.9306 2.0688 19 6 -0.6730 -6.1655 1.9770 20 6 -0.8893 -6.7415 0.7382 21 6 -0.4937 -6.0840 -0.4126 22 6 0.1180 -4.8490 -0.3284 23 1 -0.3633 -1.0237 0.0912 24 1 -0.3633 0.5907 0.8409 25 1 -0.3633 0.4328 -0.9320 26 1 2.4421 1.6198 -1.0276 27 1 1.6714 2.0648 0.5138 28 1 3.2129 1.1748 0.5138 29 1 2.6396 -4.6867 3.8443 30 1 0.1102 -4.4833 3.0366 31 1 -0.9833 -6.6818 2.8734 32 1 -1.3672 -7.7076 0.6694 33 1 -0.6637 -6.5369 -1.3781 34 1 0.4264 -4.3360 -1.2274 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179788741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:41 Heat of formation + Delta-G solvation = -18.131493 kcal Electronic energy + Delta-G solvation = -20281.351814 eV Core-core repulsion = 17095.024546 eV Total energy + Delta-G solvation = -3186.327268 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.18806 -39.85597 -37.33534 -35.18127 -34.83066 -32.06575 -29.66931 -29.25939 -27.47868 -26.71954 -25.18153 -22.21365 -21.43353 -20.34745 -18.60703 -17.77516 -16.60056 -15.76047 -15.59323 -15.31465 -14.98334 -14.67626 -13.92763 -13.70411 -13.29728 -13.15741 -13.04686 -12.54856 -12.52875 -12.24772 -12.08506 -11.90599 -11.62951 -11.39819 -11.36224 -11.17744 -11.08145 -10.85388 -10.47889 -10.05676 -9.25592 -8.81459 -8.39579 -8.08296 -7.81691 -6.97359 -6.33748 -4.65498 2.19669 2.30438 2.55191 3.00339 3.09265 3.13317 3.45336 3.89986 4.23147 4.71067 5.06155 5.15434 5.28012 5.36291 5.78452 5.83090 5.86465 5.97417 6.01030 6.04920 6.14102 6.19766 6.34697 6.67085 6.70553 6.72002 6.83286 7.05777 7.14947 7.21623 7.48263 7.56134 7.65933 7.71747 8.03451 8.34633 8.74781 9.04272 9.44942 10.41208 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.010374 C = 0.007190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.952467 B = 2698.353820 C = 3893.536348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.157 4.157 3 C -0.108 4.108 4 C 0.067 3.933 5 F -0.131 7.131 6 C 0.521 3.479 7 O -0.548 6.548 8 N -0.364 5.364 9 C -0.372 4.372 10 H 0.099 0.901 11 C 0.056 3.944 12 N -0.840 5.840 13 Si 0.919 3.081 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.173 3.827 18 C -0.086 4.086 19 C -0.129 4.129 20 C -0.167 4.167 21 C -0.124 4.124 22 C -0.190 4.190 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.276 0.724 30 H 0.138 0.862 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 4.903 -0.847 5.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.160 4.160 3 C -0.165 4.165 4 C 0.045 3.955 5 F -0.110 7.110 6 C 0.310 3.690 7 O -0.432 6.432 8 N -0.071 5.071 9 C -0.499 4.499 10 H 0.116 0.884 11 C -0.154 4.154 12 N -0.472 5.472 13 Si 0.744 3.256 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.201 1.201 17 C 0.077 3.923 18 C -0.107 4.107 19 C -0.148 4.148 20 C -0.186 4.186 21 C -0.143 4.143 22 C -0.209 4.209 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.934 4.573 -1.259 5.577 hybrid contribution 0.594 0.085 1.139 1.287 sum -2.340 4.657 -0.120 5.214 Atomic orbital electron populations 1.20648 0.90376 1.03359 1.01702 1.22072 0.96822 0.93417 1.03665 1.20632 0.99900 0.93988 1.01934 1.19093 0.77188 0.94285 1.04950 1.91435 1.29101 1.97140 1.93284 1.18818 0.80590 0.84809 0.84759 1.90355 1.60741 1.63477 1.28612 1.40900 1.45064 1.14334 1.06839 1.19437 1.37838 1.04843 0.87816 0.88378 1.25723 0.93431 0.95589 1.00681 1.70007 1.33337 1.11304 1.32520 0.85972 0.78725 0.80039 0.80835 1.18671 1.20098 1.20114 1.18315 0.93234 0.87273 0.93449 1.21112 0.96476 0.94263 0.98843 1.20793 1.01260 0.96185 0.96536 1.20825 1.04730 0.99807 0.93224 1.20839 1.00650 0.95641 0.97186 1.22752 1.01756 0.96798 0.99609 0.91367 0.90935 0.91642 0.91477 0.91477 0.91513 0.91342 0.84437 0.87700 0.88131 0.87660 0.81111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.60 36.01 0.35 -1.34 16 2 C -0.16 -2.82 6.06 -101.08 -0.61 -3.44 16 3 C -0.11 -1.53 9.88 36.01 0.36 -1.17 16 4 C 0.07 1.46 5.89 -37.72 -0.22 1.24 16 5 F -0.13 -2.91 16.32 2.25 0.04 -2.88 16 6 C 0.52 12.77 5.36 -12.67 -0.07 12.70 16 7 O -0.55 -14.01 13.49 5.23 0.07 -13.94 16 8 N -0.36 -9.16 2.44 -60.22 -0.15 -9.31 16 9 C -0.37 -9.11 7.53 -15.02 -0.11 -9.22 16 10 H 0.10 2.28 7.48 -52.48 -0.39 1.89 16 11 C 0.06 1.36 4.02 -17.47 -0.07 1.29 16 12 N -0.84 -21.73 10.72 55.50 0.59 -21.14 16 13 Si 0.92 18.71 29.56 -169.99 -5.02 13.69 16 14 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 15 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 17 C 0.17 4.34 6.04 -83.72 -0.51 3.84 16 18 C -0.09 -2.06 7.71 -39.37 -0.30 -2.36 16 19 C -0.13 -2.69 10.04 -39.61 -0.40 -3.09 16 20 C -0.17 -3.29 10.04 -39.52 -0.40 -3.68 16 21 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 22 C -0.19 -4.51 9.05 -39.37 -0.36 -4.87 16 23 H 0.07 1.29 6.19 -51.93 -0.32 0.97 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 28 H 0.07 0.97 7.49 -51.93 -0.39 0.58 16 29 H 0.28 6.71 8.32 -40.82 -0.34 6.37 16 30 H 0.14 3.39 5.12 -52.49 -0.27 3.12 16 31 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.17 4.22 4.50 -56.38 -0.25 3.97 16 LS Contribution 290.92 15.07 4.38 4.38 Total: -1.00 -27.96 290.92 -6.55 -34.51 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.72 Total: 7.77 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.74 Total: -13.09 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 0.45 Total: -30.44 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.07 Total: -13.94 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.96 -6.55 -34.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179788741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.377 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds