Wall clock time and date at job start Mon Mar 30 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50704 * 119.99596 * 2 1 4 4 C 1.33280 * 120.00137 * 179.97438 * 2 1 3 5 5 F 1.35102 * 120.00204 * 184.78444 * 4 2 1 6 6 C 1.47099 * 119.99910 * 4.78763 * 4 2 1 7 7 O 1.21648 * 120.00396 * 93.86569 * 6 4 2 8 8 N 1.34777 * 119.99811 * 273.86076 * 6 4 2 9 9 C 1.36866 * 119.99977 * 4.18563 * 8 6 4 10 10 H 1.08004 * 120.00494 * 58.94319 * 9 8 6 11 11 C 1.39007 * 119.99789 * 238.93857 * 9 8 6 12 12 N 1.31359 * 119.99776 * 357.30263 * 11 9 8 13 13 Si 1.86797 * 119.99911 * 177.29754 * 11 9 8 14 14 H 1.48504 * 109.47360 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47234 * 119.99995 * 13 11 9 16 16 H 1.48501 * 109.47173 * 240.00176 * 13 11 9 17 17 C 1.39695 * 120.00110 * 184.17793 * 8 6 4 18 18 C 1.38978 * 120.07777 * 174.39171 * 17 8 6 19 19 C 1.38081 * 119.91671 * 179.97438 * 18 17 8 20 20 C 1.38317 * 120.08114 * 359.96925 * 19 18 17 21 21 C 1.38315 * 120.15798 * 0.05528 * 20 19 18 22 22 C 1.38072 * 120.08148 * 359.94685 * 21 20 19 23 23 H 1.09005 * 109.46862 * 185.08908 * 1 2 3 24 24 H 1.08997 * 109.47258 * 305.08626 * 1 2 3 25 25 H 1.08998 * 109.47206 * 65.08952 * 1 2 3 26 26 H 1.08997 * 109.46862 * 269.99752 * 3 2 1 27 27 H 1.08998 * 109.47392 * 30.00167 * 3 2 1 28 28 H 1.09002 * 109.46447 * 150.00146 * 3 2 1 29 29 H 0.97003 * 120.00023 * 184.98955 * 12 11 9 30 30 H 1.08002 * 120.04755 * 359.69964 * 18 17 8 31 31 H 1.08001 * 119.96478 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.92196 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.96105 * 179.97438 * 21 20 19 34 34 H 1.08007 * 120.04323 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1734 -1.1542 0.0005 5 9 3.5209 -1.1562 0.0981 6 6 1.4418 -2.4260 -0.1052 7 8 1.2766 -2.9441 -1.1934 8 7 0.9545 -3.0173 1.0035 9 6 1.0651 -2.3933 2.2167 10 1 0.6259 -1.4177 2.3643 11 6 1.7426 -3.0154 3.2590 12 7 2.2308 -4.2240 3.0962 13 14 1.9589 -2.1325 4.8909 14 1 1.3213 -0.7933 4.8176 15 1 1.3199 -2.9259 5.9714 16 1 3.4069 -1.9767 5.1813 17 6 0.3365 -4.2669 0.9146 18 6 -0.0619 -4.9306 2.0688 19 6 -0.6730 -6.1655 1.9770 20 6 -0.8893 -6.7415 0.7382 21 6 -0.4937 -6.0840 -0.4126 22 6 0.1180 -4.8490 -0.3284 23 1 -0.3633 -1.0237 0.0912 24 1 -0.3633 0.5907 0.8409 25 1 -0.3633 0.4328 -0.9320 26 1 2.4421 1.6198 -1.0276 27 1 1.6714 2.0648 0.5138 28 1 3.2129 1.1748 0.5138 29 1 2.6396 -4.6867 3.8443 30 1 0.1102 -4.4833 3.0366 31 1 -0.9833 -6.6818 2.8734 32 1 -1.3672 -7.7076 0.6694 33 1 -0.6637 -6.5369 -1.3781 34 1 0.4264 -4.3360 -1.2274 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179788741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:41 Heat of formation + Delta-G solvation = -32.597116 kcal Electronic energy + Delta-G solvation = -20281.979090 eV Core-core repulsion = 17095.024546 eV Total energy + Delta-G solvation = -3186.954545 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.80666 -41.63659 -39.05196 -36.97513 -36.29460 -33.91360 -31.38127 -30.91908 -28.77973 -28.24935 -27.00687 -23.88405 -23.13706 -22.06083 -20.31150 -19.46261 -18.32151 -17.51996 -17.27403 -16.94318 -16.68098 -16.29164 -15.61072 -15.46948 -14.84558 -14.76252 -14.54791 -14.26141 -13.90265 -13.83014 -13.60151 -13.39142 -13.21899 -13.06355 -12.86137 -12.75934 -12.51797 -12.43100 -12.07565 -11.74236 -11.05264 -10.61125 -10.16673 -9.61509 -9.53639 -8.78591 -8.14827 -6.54019 0.55732 0.68936 0.81462 1.38717 1.41724 1.55197 1.70975 2.20090 2.56435 2.89441 3.32716 3.59309 3.78282 3.99705 4.31863 4.35128 4.49546 4.58738 4.66256 4.72011 4.86657 4.92512 4.97066 5.00109 5.03827 5.11293 5.32057 5.37081 5.40729 5.64961 5.78133 5.85313 5.88776 5.99204 6.21457 6.56319 6.89953 7.22530 7.63043 8.59838 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.010374 C = 0.007190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.952467 B = 2698.353820 C = 3893.536348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.115 4.115 3 C -0.110 4.110 4 C 0.005 3.995 5 F -0.143 7.143 6 C 0.510 3.490 7 O -0.575 6.575 8 N -0.374 5.374 9 C -0.379 4.379 10 H 0.105 0.895 11 C 0.016 3.984 12 N -0.877 5.877 13 Si 0.983 3.017 14 H -0.248 1.248 15 H -0.269 1.269 16 H -0.282 1.282 17 C 0.140 3.860 18 C -0.106 4.106 19 C -0.129 4.129 20 C -0.157 4.157 21 C -0.123 4.123 22 C -0.215 4.215 23 H 0.034 0.966 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.276 0.724 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 5.831 -0.153 7.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.118 4.118 3 C -0.166 4.166 4 C -0.017 4.017 5 F -0.122 7.122 6 C 0.301 3.699 7 O -0.461 6.461 8 N -0.081 5.081 9 C -0.506 4.506 10 H 0.122 0.878 11 C -0.190 4.190 12 N -0.510 5.510 13 Si 0.805 3.195 14 H -0.171 1.171 15 H -0.194 1.194 16 H -0.208 1.208 17 C 0.044 3.956 18 C -0.126 4.126 19 C -0.147 4.147 20 C -0.175 4.175 21 C -0.142 4.142 22 C -0.235 4.235 23 H 0.053 0.947 24 H 0.119 0.881 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.163 5.508 -0.566 6.927 hybrid contribution 0.874 -0.201 0.854 1.238 sum -3.289 5.306 0.288 6.250 Atomic orbital electron populations 1.20788 0.89191 1.02095 1.04379 1.22710 0.97800 0.93828 0.97438 1.20804 0.99633 0.92347 1.03804 1.19029 0.77064 0.94314 1.11249 1.91385 1.29646 1.97136 1.94075 1.19300 0.80536 0.85744 0.84344 1.90312 1.61846 1.64617 1.29331 1.41127 1.45166 1.14543 1.07221 1.19698 1.37874 1.05085 0.87913 0.87783 1.26522 0.92728 0.95952 1.03805 1.70132 1.34496 1.12843 1.33483 0.85013 0.78140 0.79584 0.76743 1.17121 1.19375 1.20774 1.18692 0.94502 0.87945 0.94423 1.21131 0.97968 0.95731 0.97811 1.21179 0.99975 0.95096 0.98478 1.21261 1.03237 1.00984 0.92042 1.21215 0.99236 0.94424 0.99304 1.22782 1.03445 0.98459 0.98797 0.94671 0.88111 0.88700 0.89133 0.88207 0.92028 0.91411 0.85899 0.84792 0.83832 0.84593 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.32 9.60 71.24 0.68 -2.64 16 2 C -0.12 -4.00 6.06 -17.57 -0.11 -4.11 16 3 C -0.11 -2.77 9.88 71.24 0.70 -2.06 16 4 C 0.01 0.23 5.89 23.48 0.14 0.37 16 5 F -0.14 -6.61 16.32 44.97 0.73 -5.88 16 6 C 0.51 26.21 5.36 86.57 0.46 26.67 16 7 O -0.58 -31.13 13.49 -4.18 -0.06 -31.19 16 8 N -0.37 -19.57 2.44 -462.67 -1.13 -20.70 16 9 C -0.38 -18.98 7.53 84.09 0.63 -18.35 16 10 H 0.10 4.89 7.48 -2.91 -0.02 4.86 16 11 C 0.02 0.79 4.02 84.95 0.34 1.14 16 12 N -0.88 -46.68 10.72 21.67 0.23 -46.44 16 13 Si 0.98 38.33 29.56 68.60 2.03 40.36 16 14 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 15 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 16 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 17 C 0.14 7.27 6.04 38.24 0.23 7.50 16 18 C -0.11 -5.12 7.71 22.41 0.17 -4.95 16 19 C -0.13 -5.20 10.04 22.25 0.22 -4.97 16 20 C -0.16 -5.78 10.04 22.31 0.22 -5.55 16 21 C -0.12 -4.98 10.04 22.25 0.22 -4.76 16 22 C -0.22 -10.55 9.05 22.41 0.20 -10.34 16 23 H 0.03 1.33 6.19 -2.38 -0.01 1.32 16 24 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.10 1.91 8.12 -2.39 -0.02 1.89 16 28 H 0.06 1.67 7.49 -2.39 -0.02 1.65 16 29 H 0.28 13.80 8.32 -92.71 -0.77 13.03 16 30 H 0.12 6.23 5.12 -2.91 -0.01 6.21 16 31 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 32 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 33 H 0.14 4.55 8.06 -2.91 -0.02 4.52 16 34 H 0.16 8.11 4.50 -64.70 -0.29 7.81 16 Total: -1.00 -64.13 290.92 6.79 -57.34 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.84 Total: 28.58 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.14 Total: -22.07 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -0.89 Total: -67.14 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.06 Total: -31.19 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.73 Total: -5.88 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -64.13 6.79 -57.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179788741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.745 kcal (2) G-P(sol) polarization free energy of solvation -64.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds