Wall clock time and date at job start Mon Mar 30 2020 06:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47189 * 2 1 4 4 C 1.38285 * 120.17749 * 270.02037 * 3 2 1 5 5 C 1.37816 * 120.21119 * 179.59866 * 4 3 2 6 6 C 1.39793 * 120.83657 * 359.94922 * 5 4 3 7 7 C 1.38922 * 118.59636 * 0.71072 * 6 5 4 8 8 C 1.38044 * 120.18353 * 89.99415 * 3 2 1 9 9 S 1.76623 * 121.44457 * 178.97736 * 7 6 5 10 10 C 1.81911 * 101.89054 * 12.23630 * 9 7 6 11 11 C 1.53740 * 106.81426 * 316.57369 * 10 9 7 12 12 H 1.08994 * 109.53942 * 310.60046 * 11 10 9 13 13 C 1.50703 * 109.53238 * 190.43790 * 11 10 9 14 14 H 1.07997 * 119.99991 * 245.66733 * 13 11 10 15 15 C 1.37874 * 119.99776 * 65.39681 * 13 11 10 16 16 N 1.31509 * 120.00080 * 355.18129 * 15 13 11 17 17 Si 1.86801 * 119.99874 * 175.18100 * 15 13 11 18 18 H 1.48505 * 109.46968 * 94.99472 * 17 15 13 19 19 H 1.48496 * 109.47421 * 214.99746 * 17 15 13 20 20 H 1.48502 * 109.47436 * 335.00006 * 17 15 13 21 21 N 1.39134 * 116.54124 * 182.01572 * 6 5 4 22 22 C 1.46903 * 111.00381 * 76.35245 * 21 6 5 23 23 H 1.08996 * 109.47373 * 60.00520 * 1 2 3 24 24 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47432 * 300.00423 * 1 2 3 26 26 H 1.08999 * 109.47136 * 239.99604 * 2 1 3 27 27 H 1.09004 * 109.46803 * 119.99362 * 2 1 3 28 28 H 1.08003 * 119.89154 * 359.57535 * 4 3 2 29 29 H 1.08005 * 119.57653 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.76392 * 0.19208 * 8 3 2 31 31 H 1.08996 * 109.98862 * 197.24923 * 10 9 7 32 32 H 1.09003 * 110.06396 * 75.94101 * 10 9 7 33 33 H 0.97004 * 119.99901 * 180.02562 * 16 15 13 34 34 H 1.08997 * 109.47184 * 191.22324 * 22 21 6 35 35 H 1.09001 * 109.46838 * 311.22242 * 22 21 6 36 36 H 1.08996 * 109.46835 * 71.22184 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2636 2.0763 -1.1954 5 6 2.7152 3.3784 -1.1963 6 6 2.9456 4.0577 0.0036 7 6 2.7241 3.3876 1.2002 8 6 2.2635 2.0752 1.1933 9 16 3.0164 4.1646 2.7592 10 6 3.2238 5.9063 2.2769 11 6 4.1137 5.9177 1.0232 12 1 4.9964 5.3025 1.1972 13 6 4.5367 7.3316 0.7184 14 1 4.1961 7.8141 -0.1858 15 6 5.3540 8.0111 1.5966 16 7 5.6873 7.4616 2.7439 17 14 5.9879 9.7123 1.1566 18 1 5.0942 10.7414 1.7464 19 1 7.3616 9.8830 1.6940 20 1 6.0115 9.8652 -0.3203 21 7 3.3589 5.3821 -0.1012 22 6 2.2321 6.2598 -0.4448 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.0902 1.5661 -2.1314 29 1 2.8928 3.8805 -2.1359 30 1 2.0861 1.5643 2.1281 31 1 3.7068 6.4607 3.0814 32 1 2.2542 6.3493 2.0494 33 1 6.2620 7.9399 3.3619 34 1 2.6091 7.2461 -0.7151 35 1 1.6856 5.8362 -1.2875 36 1 1.5656 6.3480 0.4131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214179759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:30 Heat of formation + Delta-G solvation = 26.115627 kcal Electronic energy + Delta-G solvation = -17739.963871 eV Core-core repulsion = 15121.768478 eV Total energy + Delta-G solvation = -2618.195393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.47653 -37.13865 -33.75389 -32.49875 -30.62599 -29.41561 -28.24984 -25.59579 -25.28788 -23.21081 -22.38440 -21.06247 -19.61465 -16.80395 -16.32536 -16.03534 -15.35181 -14.75087 -14.69423 -13.88883 -13.77081 -13.53046 -13.39526 -13.17932 -12.54167 -12.51641 -12.17260 -11.85934 -11.52024 -11.47399 -11.18168 -11.08635 -10.96244 -10.73149 -10.68233 -10.51488 -10.16137 -9.83571 -9.22453 -9.00854 -8.67444 -8.43022 -7.21906 -6.66811 -6.24731 -4.32241 1.70342 1.78178 2.43684 3.18251 3.26173 3.29088 3.33910 4.05174 4.23114 4.67517 4.97458 5.07034 5.08703 5.35772 5.43162 5.54301 5.68700 5.76611 5.87488 5.93142 6.00768 6.02038 6.16998 6.21227 6.23987 6.36089 6.43393 6.56103 6.64565 6.75876 6.94299 7.01695 7.17328 7.33664 7.63247 7.78720 8.00362 8.43947 8.73713 9.34360 10.81871 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.037812 B = 0.005621 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.334912 B = 4979.943703 C = 5428.921474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.099 4.099 4 C -0.116 4.116 5 C -0.113 4.113 6 C 0.123 3.877 7 C -0.105 4.105 8 C -0.087 4.087 9 S -0.185 6.185 10 C -0.107 4.107 11 C 0.226 3.774 12 H 0.059 0.941 13 C -0.508 4.508 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.271 1.271 21 N -0.514 5.514 22 C 0.045 3.955 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.066 0.934 33 H 0.267 0.733 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.117 -9.092 -4.639 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.102 4.102 4 C -0.137 4.137 5 C -0.135 4.135 6 C 0.019 3.981 7 C -0.221 4.221 8 C -0.112 4.112 9 S 0.060 5.940 10 C -0.256 4.256 11 C 0.119 3.881 12 H 0.077 0.923 13 C -0.548 4.548 14 H 0.090 0.910 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.196 1.196 21 N -0.229 5.229 22 C -0.100 4.100 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.618 -9.363 -3.583 12.591 hybrid contribution -0.017 1.432 -0.619 1.560 sum -7.635 -7.930 -4.201 11.783 Atomic orbital electron populations 1.21748 0.95198 1.01118 1.02222 1.20421 0.95781 0.92885 1.02322 1.19568 1.01788 0.95988 0.92842 1.20702 1.01306 0.94628 0.97075 1.21108 1.01066 0.94251 0.97045 1.18681 0.96247 0.91506 0.91624 1.21798 1.05127 0.98632 0.96497 1.20495 1.00341 0.92787 0.97529 1.85237 1.88859 1.10966 1.08897 1.24993 1.03459 0.89352 1.07819 1.19414 0.90477 0.96810 0.81414 0.92279 1.21049 1.30355 0.96578 1.06843 0.91047 1.24989 0.95647 0.98674 0.94687 1.69869 1.35735 1.38358 1.08291 0.86383 0.78355 0.83255 0.78920 1.20634 1.20942 1.19556 1.57360 1.23952 0.98689 1.42890 1.22312 0.90981 0.98027 0.98724 0.92661 0.92858 0.92614 0.91377 0.91443 0.86576 0.85949 0.86437 0.84417 0.91522 0.92352 0.89642 0.93037 0.95713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 37.16 0.37 -1.10 16 2 C -0.08 -0.86 6.07 -27.89 -0.17 -1.03 16 3 C -0.10 -1.48 5.13 -104.68 -0.54 -2.01 16 4 C -0.12 -1.73 9.69 -39.72 -0.38 -2.11 16 5 C -0.11 -1.96 9.17 -39.15 -0.36 -2.32 16 6 C 0.12 2.51 5.15 -83.71 -0.43 2.07 16 7 C -0.10 -2.11 6.05 -39.01 -0.24 -2.35 16 8 C -0.09 -1.51 9.34 -39.34 -0.37 -1.87 16 9 S -0.18 -3.97 22.13 -107.50 -2.38 -6.35 16 10 C -0.11 -2.50 5.72 37.54 0.21 -2.29 16 11 C 0.23 5.58 2.02 -69.17 -0.14 5.44 16 12 H 0.06 1.67 8.06 -51.93 -0.42 1.25 16 13 C -0.51 -13.09 7.96 -34.44 -0.27 -13.36 16 14 H 0.07 1.80 6.08 -52.49 -0.32 1.48 16 15 C 0.06 1.65 5.33 -17.82 -0.10 1.56 16 16 N -0.89 -23.95 11.55 55.43 0.64 -23.31 16 17 Si 0.90 20.19 29.54 -169.99 -5.02 15.16 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 N -0.51 -11.22 4.26 -173.08 -0.74 -11.96 16 22 C 0.04 0.86 8.90 60.07 0.53 1.40 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 29 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 30 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.14 3.54 6.24 -51.93 -0.32 3.22 16 32 H 0.07 1.51 6.08 -51.93 -0.32 1.19 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 34 H 0.09 1.66 6.04 -51.93 -0.31 1.35 16 35 H 0.05 0.86 7.57 -51.93 -0.39 0.47 16 36 H 0.02 0.48 6.20 -51.93 -0.32 0.16 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -26.99 298.57 -9.79 -36.78 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.92 Total: 3.15 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -1.88 Total: -17.98 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.10 Total: -35.27 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -2.38 Total: -6.35 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.99 -9.79 -36.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214179759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.895 kcal (2) G-P(sol) polarization free energy of solvation -26.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds