Wall clock time and date at job start Mon Mar 30 2020 06:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47189 * 2 1 4 4 C 1.38285 * 120.17749 * 270.02037 * 3 2 1 5 5 C 1.37816 * 120.21119 * 179.59866 * 4 3 2 6 6 C 1.39793 * 120.83657 * 359.94922 * 5 4 3 7 7 C 1.38922 * 118.59636 * 0.71072 * 6 5 4 8 8 C 1.38044 * 120.18353 * 89.99415 * 3 2 1 9 9 S 1.76623 * 121.44457 * 178.97736 * 7 6 5 10 10 C 1.81911 * 101.89054 * 12.23630 * 9 7 6 11 11 C 1.53740 * 106.81426 * 316.57369 * 10 9 7 12 12 H 1.08994 * 109.53942 * 310.60046 * 11 10 9 13 13 C 1.50703 * 109.53238 * 190.43790 * 11 10 9 14 14 H 1.07997 * 119.99991 * 245.66733 * 13 11 10 15 15 C 1.37874 * 119.99776 * 65.39681 * 13 11 10 16 16 N 1.31509 * 120.00080 * 355.18129 * 15 13 11 17 17 Si 1.86801 * 119.99874 * 175.18100 * 15 13 11 18 18 H 1.48505 * 109.46968 * 94.99472 * 17 15 13 19 19 H 1.48496 * 109.47421 * 214.99746 * 17 15 13 20 20 H 1.48502 * 109.47436 * 335.00006 * 17 15 13 21 21 N 1.39134 * 116.54124 * 182.01572 * 6 5 4 22 22 C 1.46903 * 111.00381 * 76.35245 * 21 6 5 23 23 H 1.08996 * 109.47373 * 60.00520 * 1 2 3 24 24 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47432 * 300.00423 * 1 2 3 26 26 H 1.08999 * 109.47136 * 239.99604 * 2 1 3 27 27 H 1.09004 * 109.46803 * 119.99362 * 2 1 3 28 28 H 1.08003 * 119.89154 * 359.57535 * 4 3 2 29 29 H 1.08005 * 119.57653 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.76392 * 0.19208 * 8 3 2 31 31 H 1.08996 * 109.98862 * 197.24923 * 10 9 7 32 32 H 1.09003 * 110.06396 * 75.94101 * 10 9 7 33 33 H 0.97004 * 119.99901 * 180.02562 * 16 15 13 34 34 H 1.08997 * 109.47184 * 191.22324 * 22 21 6 35 35 H 1.09001 * 109.46838 * 311.22242 * 22 21 6 36 36 H 1.08996 * 109.46835 * 71.22184 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2636 2.0763 -1.1954 5 6 2.7152 3.3784 -1.1963 6 6 2.9456 4.0577 0.0036 7 6 2.7241 3.3876 1.2002 8 6 2.2635 2.0752 1.1933 9 16 3.0164 4.1646 2.7592 10 6 3.2238 5.9063 2.2769 11 6 4.1137 5.9177 1.0232 12 1 4.9964 5.3025 1.1972 13 6 4.5367 7.3316 0.7184 14 1 4.1961 7.8141 -0.1858 15 6 5.3540 8.0111 1.5966 16 7 5.6873 7.4616 2.7439 17 14 5.9879 9.7123 1.1566 18 1 5.0942 10.7414 1.7464 19 1 7.3616 9.8830 1.6940 20 1 6.0115 9.8652 -0.3203 21 7 3.3589 5.3821 -0.1012 22 6 2.2321 6.2598 -0.4448 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.0902 1.5661 -2.1314 29 1 2.8928 3.8805 -2.1359 30 1 2.0861 1.5643 2.1281 31 1 3.7068 6.4607 3.0814 32 1 2.2542 6.3493 2.0494 33 1 6.2620 7.9399 3.3619 34 1 2.6091 7.2461 -0.7151 35 1 1.6856 5.8362 -1.2875 36 1 1.5656 6.3480 0.4131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214179759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:30 Heat of formation + Delta-G solvation = 12.448880 kcal Electronic energy + Delta-G solvation = -17740.556505 eV Core-core repulsion = 15121.768478 eV Total energy + Delta-G solvation = -2618.788028 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.93914 -38.64159 -35.29673 -33.99575 -32.03342 -31.08175 -29.62642 -27.51565 -26.80619 -24.50861 -23.74479 -22.45315 -21.18325 -18.59443 -18.00748 -17.60355 -16.84085 -16.43861 -16.10678 -15.48146 -15.22828 -14.85272 -14.66196 -14.38763 -14.25773 -13.87272 -13.60141 -13.43287 -12.96349 -12.89629 -12.82613 -12.68911 -12.47897 -12.29588 -12.05110 -11.88725 -11.71202 -11.42630 -10.92910 -10.69780 -10.52504 -9.94167 -8.80531 -8.31829 -8.22243 -6.38105 0.32373 0.43261 0.78808 1.41452 1.43451 1.53786 1.58204 2.36759 2.71686 3.02941 3.11655 3.91095 3.93653 4.17402 4.22758 4.32898 4.43479 4.48026 4.56527 4.61142 4.65648 4.68535 4.84077 4.92619 5.02324 5.11721 5.14779 5.16467 5.24409 5.38936 5.44943 5.46956 5.65130 5.71019 5.87683 6.03320 6.18091 6.70778 6.77397 7.32566 8.83168 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.037812 B = 0.005621 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.334912 B = 4979.943703 C = 5428.921474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.086 4.086 4 C -0.102 4.102 5 C -0.115 4.115 6 C 0.089 3.911 7 C -0.129 4.129 8 C -0.095 4.095 9 S -0.199 6.199 10 C -0.097 4.097 11 C 0.237 3.763 12 H 0.011 0.989 13 C -0.522 4.522 14 H 0.075 0.925 15 C 0.018 3.982 16 N -0.915 5.915 17 Si 0.969 3.031 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.265 1.265 21 N -0.522 5.522 22 C 0.050 3.950 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.157 0.843 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.267 0.733 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.323 -10.671 -6.770 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.089 4.089 4 C -0.123 4.123 5 C -0.136 4.136 6 C -0.013 4.013 7 C -0.244 4.244 8 C -0.119 4.119 9 S 0.045 5.955 10 C -0.247 4.247 11 C 0.128 3.872 12 H 0.029 0.971 13 C -0.561 4.561 14 H 0.093 0.907 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.794 3.206 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.189 1.189 21 N -0.238 5.238 22 C -0.095 4.095 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.175 0.825 29 H 0.153 0.847 30 H 0.144 0.856 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -8.844 -10.963 -5.737 15.209 hybrid contribution 0.298 1.726 -0.018 1.752 sum -8.546 -9.236 -5.756 13.837 Atomic orbital electron populations 1.21733 0.94082 1.02480 1.01784 1.20529 0.96566 0.90303 1.03863 1.20044 0.99485 0.97574 0.91764 1.21161 0.98809 0.93504 0.98784 1.21302 1.00849 0.95268 0.96222 1.18948 0.98352 0.91085 0.92963 1.21918 1.07482 0.99922 0.95121 1.20711 1.00184 0.91765 0.99198 1.85063 1.89648 1.09646 1.11108 1.24610 1.02874 0.90729 1.06480 1.19001 0.89583 0.95583 0.83010 0.97084 1.21329 1.30615 0.97227 1.06953 0.90732 1.25792 0.95774 1.02283 0.94457 1.70010 1.36296 1.39860 1.09201 0.85362 0.77531 0.78886 0.78808 1.19894 1.21040 1.18888 1.57342 1.24979 0.99971 1.41511 1.22314 0.90301 0.97624 0.99298 0.92409 0.90675 0.93797 0.89046 0.90816 0.82498 0.84656 0.85642 0.87163 0.91354 0.92418 0.90297 0.90192 0.96580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.89 71.98 0.71 -1.61 16 2 C -0.08 -1.37 6.07 29.85 0.18 -1.19 16 3 C -0.09 -2.27 5.13 -19.90 -0.10 -2.37 16 4 C -0.10 -2.63 9.69 22.18 0.21 -2.42 16 5 C -0.12 -3.72 9.17 22.55 0.21 -3.51 16 6 C 0.09 3.61 5.15 38.52 0.20 3.81 16 7 C -0.13 -5.24 6.05 22.64 0.14 -5.10 16 8 C -0.09 -3.14 9.34 22.43 0.21 -2.93 16 9 S -0.20 -8.89 22.13 -56.49 -1.25 -10.14 16 10 C -0.10 -4.79 5.72 72.23 0.41 -4.38 16 11 C 0.24 12.21 2.02 44.66 0.09 12.30 16 12 H 0.01 0.68 8.06 -2.39 -0.02 0.66 16 13 C -0.52 -27.67 7.96 25.60 0.20 -27.47 16 14 H 0.07 3.82 6.08 -2.91 -0.02 3.80 16 15 C 0.02 0.93 5.33 84.65 0.45 1.38 16 16 N -0.92 -51.53 11.55 21.45 0.25 -51.28 16 17 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 N -0.52 -23.20 4.26 -701.50 -2.99 -26.19 16 22 C 0.05 1.91 8.90 127.69 1.14 3.04 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 27 H 0.07 1.29 8.09 -2.38 -0.02 1.28 16 28 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 31 H 0.11 6.04 6.24 -2.39 -0.01 6.02 16 32 H 0.07 3.25 6.08 -2.39 -0.01 3.24 16 33 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.08 3.08 6.04 -2.39 -0.01 3.07 16 35 H 0.08 2.56 7.57 -2.39 -0.02 2.54 16 36 H 0.02 0.63 6.20 -2.39 -0.01 0.61 16 Total: -1.00 -60.77 298.57 3.16 -57.61 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 1.07 Total: 16.41 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 4.05 Total: -30.45 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -2.74 Total: -77.47 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.25 Total: -10.14 kcal Total: -60.77 3.16 -57.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214179759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.061 kcal (2) G-P(sol) polarization free energy of solvation -60.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds