Wall clock time and date at job start Mon Mar 30 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46922 * 2 1 4 4 C 1.38279 * 120.18362 * 270.29226 * 3 2 1 5 5 C 1.37822 * 120.21431 * 180.57732 * 4 3 2 6 6 C 1.39798 * 120.83350 * 359.47027 * 5 4 3 7 7 C 1.38923 * 118.59334 * 359.62956 * 6 5 4 8 8 C 1.38049 * 120.18065 * 90.00139 * 3 2 1 9 9 S 1.76626 * 121.44108 * 181.17423 * 7 6 5 10 10 C 1.81926 * 101.88803 * 347.66525 * 9 7 6 11 11 C 1.53728 * 106.81532 * 43.44608 * 10 9 7 12 12 H 1.09006 * 109.53410 * 49.34608 * 11 10 9 13 13 C 1.50704 * 109.53320 * 169.49510 * 11 10 9 14 14 H 1.08002 * 119.99658 * 114.59120 * 13 11 10 15 15 C 1.37871 * 120.00257 * 294.59662 * 13 11 10 16 16 N 1.31518 * 120.00070 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00092 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47169 * 59.99509 * 17 15 13 19 19 H 1.48497 * 109.47250 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47002 * 299.99381 * 17 15 13 21 21 N 1.39132 * 116.54650 * 178.32760 * 6 5 4 22 22 C 1.46897 * 111.00268 * 26.89242 * 21 6 5 23 23 H 1.09000 * 109.47761 * 59.99842 * 1 2 3 24 24 H 1.09007 * 109.47013 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47336 * 299.99374 * 1 2 3 26 26 H 1.09007 * 109.47122 * 240.00413 * 2 1 3 27 27 H 1.08995 * 109.47305 * 120.00087 * 2 1 3 28 28 H 1.08004 * 119.89297 * 0.30134 * 4 3 2 29 29 H 1.08002 * 119.57916 * 179.75319 * 5 4 3 30 30 H 1.08005 * 119.76153 * 0.02562 * 8 3 2 31 31 H 1.08994 * 109.98234 * 162.77754 * 10 9 7 32 32 H 1.08995 * 109.97730 * 284.02864 * 10 9 7 33 33 H 0.97000 * 119.99998 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.47007 * 52.30464 * 22 21 6 35 35 H 1.08997 * 109.47295 * 172.30842 * 22 21 6 36 36 H 1.09005 * 109.46996 * 292.30474 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2582 2.0783 -1.1953 5 6 2.7289 3.3737 -1.1961 6 6 2.9749 4.0474 0.0038 7 6 2.7274 3.3863 1.2004 8 6 2.2636 2.0751 1.1934 9 16 2.9825 4.1763 2.7593 10 6 3.9123 5.6641 2.2778 11 6 3.2279 6.2294 1.0227 12 1 2.1539 6.3016 1.1945 13 6 3.7827 7.5973 0.7191 14 1 4.3487 7.7617 -0.1859 15 6 3.5678 8.6387 1.5966 16 7 2.8782 8.4386 2.6985 17 14 4.2562 10.3341 1.2206 18 1 3.6919 10.8239 -0.0627 19 1 3.8882 11.2710 2.3123 20 1 5.7352 10.2551 1.1130 21 7 3.4825 5.3386 -0.1008 22 6 3.0796 5.9617 -1.3686 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.0695 1.5736 -2.1313 29 1 2.9056 3.8761 -2.1357 30 1 2.0837 1.5649 2.1282 31 1 3.8814 6.3992 3.0821 32 1 4.9459 5.4010 2.0537 33 1 2.7267 9.1714 3.3157 34 1 1.9982 5.8857 -1.4832 35 1 3.3719 7.0117 -1.3664 36 1 3.5696 5.4498 -2.1968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214179816.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:32 Heat of formation + Delta-G solvation = 27.032681 kcal Electronic energy + Delta-G solvation = -17715.486716 eV Core-core repulsion = 15097.331089 eV Total energy + Delta-G solvation = -2618.155627 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.52219 -37.03219 -33.76990 -32.51604 -30.89641 -29.58132 -28.44148 -25.79937 -24.71784 -23.24354 -22.16229 -21.03835 -19.68605 -17.05589 -16.28734 -16.02235 -15.44227 -14.73562 -14.56097 -14.14956 -13.76676 -13.51121 -13.28911 -12.97148 -12.65640 -12.35485 -12.23082 -11.81368 -11.58024 -11.39967 -11.26190 -11.04467 -10.91121 -10.88889 -10.63049 -10.51458 -10.16491 -9.75224 -9.31735 -9.04315 -8.72226 -8.63525 -7.30800 -6.40285 -6.26737 -4.39719 1.78247 1.88753 2.51963 3.16583 3.23589 3.24623 3.35671 4.07458 4.20403 4.60647 5.02445 5.05055 5.11853 5.34305 5.49595 5.53863 5.74893 5.81305 5.84217 5.96387 6.00252 6.10245 6.19822 6.27509 6.30022 6.37461 6.43832 6.57057 6.66517 6.71966 6.94288 7.03120 7.23290 7.31675 7.53738 7.64599 7.90975 8.29698 8.66041 9.26913 10.76194 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.034844 B = 0.005730 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.388254 B = 4885.511065 C = 5425.047278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.125 4.125 4 C -0.094 4.094 5 C -0.171 4.171 6 C 0.147 3.853 7 C -0.113 4.113 8 C -0.070 4.070 9 S -0.190 6.190 10 C -0.065 4.065 11 C 0.225 3.775 12 H 0.032 0.968 13 C -0.519 4.519 14 H 0.073 0.927 15 C 0.066 3.934 16 N -0.882 5.882 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 N -0.506 5.506 22 C 0.036 3.964 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.072 0.928 33 H 0.269 0.731 34 H 0.030 0.970 35 H 0.099 0.901 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 -10.407 -5.271 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.128 4.128 4 C -0.115 4.115 5 C -0.195 4.195 6 C 0.039 3.961 7 C -0.229 4.229 8 C -0.095 4.095 9 S 0.054 5.946 10 C -0.213 4.213 11 C 0.120 3.880 12 H 0.049 0.951 13 C -0.559 4.559 14 H 0.091 0.909 15 C -0.138 4.138 16 N -0.518 5.518 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 N -0.216 5.216 22 C -0.110 4.110 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.150 0.850 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.117 0.883 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.867 -10.467 -3.855 11.310 hybrid contribution 0.161 1.357 -1.236 1.843 sum -1.706 -9.110 -5.091 10.575 Atomic orbital electron populations 1.21763 0.95391 1.00962 1.02237 1.20362 0.95641 0.92957 1.02046 1.19450 1.04340 0.96218 0.92800 1.20629 0.99597 0.94327 0.96983 1.21208 1.05591 0.95948 0.96718 1.18771 0.93192 0.91508 0.92582 1.21106 1.09013 0.97812 0.94961 1.20459 0.99428 0.92072 0.97492 1.85165 1.72213 1.28149 1.09119 1.24318 0.99167 0.93249 1.04592 1.19289 0.95889 0.89445 0.83413 0.95065 1.21018 1.35686 0.91578 1.07627 0.90921 1.24994 0.94593 0.99471 0.94768 1.69899 1.38276 1.32997 1.10648 0.86438 0.79555 0.82708 0.78128 1.19967 1.21012 1.19911 1.56493 1.56786 1.01236 1.07062 1.22465 0.97961 1.01837 0.88709 0.92732 0.92999 0.92600 0.91637 0.91610 0.86823 0.85742 0.86383 0.84988 0.90946 0.92151 0.95149 0.88277 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 37.16 0.37 -1.21 16 2 C -0.07 -0.85 6.07 -27.89 -0.17 -1.02 16 3 C -0.12 -1.91 5.13 -104.68 -0.54 -2.45 16 4 C -0.09 -1.45 9.69 -39.72 -0.38 -1.83 16 5 C -0.17 -3.00 8.86 -39.15 -0.35 -3.35 16 6 C 0.15 3.05 5.97 -83.71 -0.50 2.55 16 7 C -0.11 -2.33 6.05 -39.01 -0.24 -2.57 16 8 C -0.07 -1.24 9.34 -39.34 -0.37 -1.61 16 9 S -0.19 -4.13 22.13 -107.50 -2.38 -6.51 16 10 C -0.06 -1.54 5.94 37.54 0.22 -1.32 16 11 C 0.23 5.53 1.72 -69.18 -0.12 5.41 16 12 H 0.03 0.88 8.06 -51.93 -0.42 0.46 16 13 C -0.52 -13.17 7.48 -34.44 -0.26 -13.43 16 14 H 0.07 1.80 6.27 -52.49 -0.33 1.47 16 15 C 0.07 1.69 5.27 -17.82 -0.09 1.60 16 16 N -0.88 -23.60 11.76 55.43 0.65 -22.95 16 17 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 N -0.51 -11.10 4.33 -173.08 -0.75 -11.85 16 22 C 0.04 0.68 8.30 60.06 0.50 1.18 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 28 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.12 1.96 5.68 -52.49 -0.30 1.66 16 30 H 0.12 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.13 3.37 6.43 -51.93 -0.33 3.04 16 32 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.03 0.56 7.93 -51.93 -0.41 0.15 16 35 H 0.10 1.96 5.37 -51.93 -0.28 1.69 16 36 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 LS Contribution 298.28 15.07 4.49 4.49 Total: -1.00 -26.83 298.28 -9.85 -36.68 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.92 Total: 3.37 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -1.92 Total: -18.05 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.10 Total: -34.79 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -2.38 Total: -6.51 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.83 -9.85 -36.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214179816.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.712 kcal (2) G-P(sol) polarization free energy of solvation -26.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds