Wall clock time and date at job start Mon Mar 30 2020 06:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46922 * 2 1 4 4 C 1.38279 * 120.18362 * 270.29226 * 3 2 1 5 5 C 1.37822 * 120.21431 * 180.57732 * 4 3 2 6 6 C 1.39798 * 120.83350 * 359.47027 * 5 4 3 7 7 C 1.38923 * 118.59334 * 359.62956 * 6 5 4 8 8 C 1.38049 * 120.18065 * 90.00139 * 3 2 1 9 9 S 1.76626 * 121.44108 * 181.17423 * 7 6 5 10 10 C 1.81926 * 101.88803 * 347.66525 * 9 7 6 11 11 C 1.53728 * 106.81532 * 43.44608 * 10 9 7 12 12 H 1.09006 * 109.53410 * 49.34608 * 11 10 9 13 13 C 1.50704 * 109.53320 * 169.49510 * 11 10 9 14 14 H 1.08002 * 119.99658 * 114.59120 * 13 11 10 15 15 C 1.37871 * 120.00257 * 294.59662 * 13 11 10 16 16 N 1.31518 * 120.00070 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00092 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47169 * 59.99509 * 17 15 13 19 19 H 1.48497 * 109.47250 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47002 * 299.99381 * 17 15 13 21 21 N 1.39132 * 116.54650 * 178.32760 * 6 5 4 22 22 C 1.46897 * 111.00268 * 26.89242 * 21 6 5 23 23 H 1.09000 * 109.47761 * 59.99842 * 1 2 3 24 24 H 1.09007 * 109.47013 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47336 * 299.99374 * 1 2 3 26 26 H 1.09007 * 109.47122 * 240.00413 * 2 1 3 27 27 H 1.08995 * 109.47305 * 120.00087 * 2 1 3 28 28 H 1.08004 * 119.89297 * 0.30134 * 4 3 2 29 29 H 1.08002 * 119.57916 * 179.75319 * 5 4 3 30 30 H 1.08005 * 119.76153 * 0.02562 * 8 3 2 31 31 H 1.08994 * 109.98234 * 162.77754 * 10 9 7 32 32 H 1.08995 * 109.97730 * 284.02864 * 10 9 7 33 33 H 0.97000 * 119.99998 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.47007 * 52.30464 * 22 21 6 35 35 H 1.08997 * 109.47295 * 172.30842 * 22 21 6 36 36 H 1.09005 * 109.46996 * 292.30474 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2582 2.0783 -1.1953 5 6 2.7289 3.3737 -1.1961 6 6 2.9749 4.0474 0.0038 7 6 2.7274 3.3863 1.2004 8 6 2.2636 2.0751 1.1934 9 16 2.9825 4.1763 2.7593 10 6 3.9123 5.6641 2.2778 11 6 3.2279 6.2294 1.0227 12 1 2.1539 6.3016 1.1945 13 6 3.7827 7.5973 0.7191 14 1 4.3487 7.7617 -0.1859 15 6 3.5678 8.6387 1.5966 16 7 2.8782 8.4386 2.6985 17 14 4.2562 10.3341 1.2206 18 1 3.6919 10.8239 -0.0627 19 1 3.8882 11.2710 2.3123 20 1 5.7352 10.2551 1.1130 21 7 3.4825 5.3386 -0.1008 22 6 3.0796 5.9617 -1.3686 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.0695 1.5736 -2.1313 29 1 2.9056 3.8761 -2.1357 30 1 2.0837 1.5649 2.1282 31 1 3.8814 6.3992 3.0821 32 1 4.9459 5.4010 2.0537 33 1 2.7267 9.1714 3.3157 34 1 1.9982 5.8857 -1.4832 35 1 3.3719 7.0117 -1.3664 36 1 3.5696 5.4498 -2.1968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214179816.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:31 Heat of formation + Delta-G solvation = 13.442672 kcal Electronic energy + Delta-G solvation = -17716.076023 eV Core-core repulsion = 15097.331089 eV Total energy + Delta-G solvation = -2618.744934 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99547 -38.52505 -35.38377 -33.93610 -32.44734 -31.20968 -29.81644 -27.51757 -26.36919 -24.57137 -23.53028 -22.51358 -21.21045 -18.85851 -17.94340 -17.60903 -16.96235 -16.33415 -16.22472 -15.41936 -15.15158 -15.00001 -14.66552 -14.31025 -14.15396 -13.81624 -13.61721 -13.44078 -13.15539 -12.92840 -12.74208 -12.66930 -12.58907 -12.35389 -12.04244 -11.79412 -11.68893 -11.33972 -10.89576 -10.73153 -10.44070 -10.38969 -8.86884 -8.27858 -8.00162 -6.42410 0.37785 0.49585 0.84831 1.42100 1.44220 1.52368 1.60261 2.34656 2.69681 3.01563 3.09831 3.87104 3.96565 4.19263 4.28850 4.35501 4.36308 4.52347 4.56725 4.61955 4.63675 4.70314 4.86541 4.90836 5.01549 5.12219 5.13345 5.15194 5.24903 5.31703 5.41782 5.46511 5.56768 5.74989 5.82574 6.04684 6.13566 6.61488 6.70085 7.28195 8.80559 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.034844 B = 0.005730 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.388254 B = 4885.511065 C = 5425.047278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.111 4.111 4 C -0.085 4.085 5 C -0.169 4.169 6 C 0.111 3.889 7 C -0.140 4.140 8 C -0.079 4.079 9 S -0.201 6.201 10 C -0.058 4.058 11 C 0.237 3.763 12 H -0.015 1.015 13 C -0.530 4.530 14 H 0.077 0.923 15 C 0.020 3.980 16 N -0.914 5.914 17 Si 0.970 3.030 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.269 1.269 21 N -0.518 5.518 22 C 0.038 3.962 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.041 0.959 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.155 0.845 29 H 0.144 0.856 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.268 0.732 34 H 0.028 0.972 35 H 0.085 0.915 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -12.327 -7.578 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.114 4.114 4 C -0.106 4.106 5 C -0.192 4.192 6 C 0.005 3.995 7 C -0.255 4.255 8 C -0.103 4.103 9 S 0.042 5.958 10 C -0.207 4.207 11 C 0.130 3.870 12 H 0.003 0.997 13 C -0.570 4.570 14 H 0.095 0.905 15 C -0.181 4.181 16 N -0.551 5.551 17 Si 0.795 3.205 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.194 1.194 21 N -0.229 5.229 22 C -0.107 4.107 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.173 0.827 29 H 0.162 0.838 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.104 0.896 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.003 -12.423 -6.191 14.024 hybrid contribution 0.109 1.750 -0.580 1.847 sum -1.894 -10.673 -6.772 12.781 Atomic orbital electron populations 1.21750 0.94523 1.02352 1.01591 1.20468 0.96210 0.90423 1.03746 1.19948 1.01858 0.97821 0.91787 1.21120 0.97392 0.93383 0.98698 1.21487 1.04775 0.96825 0.96114 1.19054 0.95292 0.91246 0.93941 1.21293 1.11286 0.99102 0.93861 1.20688 0.99334 0.91109 0.99173 1.84973 1.72378 1.27232 1.11202 1.23986 0.99077 0.93909 1.03754 1.18909 0.92956 0.90253 0.84903 0.99731 1.21299 1.35542 0.92318 1.07803 0.90465 1.25804 0.94748 1.03083 0.94459 1.70038 1.39556 1.33932 1.11586 0.85412 0.78935 0.78150 0.78031 1.19063 1.21037 1.19370 1.56566 1.57940 1.01558 1.06825 1.22501 0.98191 1.01349 0.88662 0.92659 0.90669 0.94023 0.89158 0.90806 0.82708 0.83839 0.85555 0.87423 0.91504 0.92270 0.95292 0.89649 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 71.98 0.71 -1.86 16 2 C -0.07 -1.36 6.07 29.85 0.18 -1.18 16 3 C -0.11 -3.04 5.13 -19.90 -0.10 -3.14 16 4 C -0.09 -2.28 9.69 22.18 0.21 -2.06 16 5 C -0.17 -5.51 8.86 22.55 0.20 -5.31 16 6 C 0.11 4.56 5.97 38.53 0.23 4.79 16 7 C -0.14 -5.82 6.05 22.64 0.14 -5.68 16 8 C -0.08 -2.70 9.34 22.43 0.21 -2.49 16 9 S -0.20 -9.11 22.13 -56.49 -1.25 -10.36 16 10 C -0.06 -2.94 5.94 72.23 0.43 -2.51 16 11 C 0.24 12.16 1.72 44.66 0.08 12.24 16 12 H -0.01 -0.88 8.06 -2.38 -0.02 -0.90 16 13 C -0.53 -27.73 7.48 25.60 0.19 -27.54 16 14 H 0.08 3.88 6.27 -2.91 -0.02 3.86 16 15 C 0.02 1.07 5.27 84.65 0.45 1.51 16 16 N -0.91 -50.96 11.76 21.45 0.25 -50.71 16 17 Si 0.97 41.24 29.54 68.60 2.03 43.27 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 21 N -0.52 -23.08 4.33 -701.51 -3.04 -26.12 16 22 C 0.04 1.43 8.30 127.69 1.06 2.49 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 1.36 8.09 -2.38 -0.02 1.34 16 27 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 28 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.14 4.03 5.68 -2.91 -0.02 4.01 16 30 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 31 H 0.11 5.88 6.43 -2.39 -0.02 5.87 16 32 H 0.07 3.32 8.14 -2.39 -0.02 3.31 16 33 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.03 1.06 7.93 -2.38 -0.02 1.04 16 35 H 0.08 3.41 5.37 -2.39 -0.01 3.39 16 36 H 0.09 2.69 6.57 -2.38 -0.02 2.67 16 Total: -1.00 -60.59 298.28 3.05 -57.54 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.07 Total: 17.12 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 3.99 Total: -30.74 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -2.79 Total: -76.83 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.25 Total: -10.36 kcal Total: -60.59 3.05 -57.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214179816.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.986 kcal (2) G-P(sol) polarization free energy of solvation -60.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds