Wall clock time and date at job start Mon Mar 30 2020 06:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47281 * 2 1 4 4 C 1.50700 * 109.46936 * 120.00339 * 2 1 3 5 5 C 1.38273 * 120.04538 * 300.25472 * 4 2 1 6 6 C 1.38021 * 120.17271 * 180.14328 * 5 4 2 7 7 C 1.39311 * 120.45666 * 359.58080 * 6 5 4 8 8 C 1.39091 * 119.21601 * 0.36385 * 7 6 5 9 9 C 1.38106 * 120.04746 * 120.00118 * 4 2 1 10 10 S 1.76438 * 121.18471 * 179.54885 * 8 7 6 11 11 C 1.81689 * 102.56274 * 16.11980 * 10 8 7 12 12 C 1.53594 * 107.80301 * 312.94594 * 11 10 8 13 13 H 1.08996 * 109.75024 * 306.00924 * 12 11 10 14 14 C 1.50697 * 109.61136 * 185.57243 * 12 11 10 15 15 H 1.07995 * 120.00300 * 0.86365 * 14 12 11 16 16 C 1.37878 * 119.99849 * 180.86069 * 14 12 11 17 17 N 1.31516 * 119.99941 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99966 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47060 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.46901 * 120.00084 * 18 16 14 21 21 H 1.48501 * 109.46740 * 239.99807 * 18 16 14 22 22 N 1.39593 * 117.92436 * 180.74120 * 7 6 5 23 23 H 1.09003 * 109.46951 * 300.00252 * 1 2 3 24 24 H 1.08998 * 109.47306 * 60.00005 * 1 2 3 25 25 H 1.09001 * 109.47181 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46951 * 239.99748 * 2 1 3 27 27 H 1.09003 * 109.47334 * 59.99983 * 3 2 1 28 28 H 1.09002 * 109.47079 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46947 * 300.00215 * 3 2 1 30 30 H 1.08009 * 119.91413 * 359.86623 * 5 4 2 31 31 H 1.08002 * 119.77523 * 179.86701 * 6 5 4 32 32 H 1.07996 * 119.84968 * 359.95271 * 9 4 2 33 33 H 1.09002 * 109.79558 * 193.37047 * 11 10 8 34 34 H 1.08998 * 109.79694 * 72.52298 * 11 10 8 35 35 H 0.97002 * 119.99672 * 179.97438 * 17 16 14 36 36 H 0.96998 * 118.58826 * 17.87154 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6945 -0.2420 2.4868 6 6 2.1555 -0.8890 3.6154 7 6 2.9567 -2.0229 3.5017 8 6 3.2937 -2.4920 2.2364 9 6 2.8264 -1.8334 1.1048 10 16 4.3150 -3.9162 2.0321 11 6 4.2579 -4.6828 3.6784 12 6 4.5011 -3.5795 4.7189 13 1 5.4263 -3.0521 4.4871 14 6 4.5983 -4.1921 6.0923 15 1 4.5114 -5.2616 6.2140 16 6 4.7983 -3.3870 7.1936 17 7 4.9047 -2.0846 7.0454 18 14 4.9196 -4.1464 8.8960 19 1 4.7691 -5.6200 8.7926 20 1 6.2423 -3.8237 9.4888 21 1 3.8431 -3.5987 9.7601 22 7 3.3805 -2.6445 4.6776 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.0719 0.6351 2.5851 31 1 1.8894 -0.5163 4.5936 32 1 3.0857 -2.2013 0.1231 33 1 5.0346 -5.4434 3.7585 34 1 3.2795 -5.1348 3.8414 35 1 5.0450 -1.5181 7.8203 36 1 2.9105 -2.4465 5.5027 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214180705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:31 Heat of formation + Delta-G solvation = 3.306556 kcal Electronic energy + Delta-G solvation = -17451.492978 eV Core-core repulsion = 14832.308510 eV Total energy + Delta-G solvation = -2619.184469 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04498 -36.51730 -34.40380 -32.23852 -30.52782 -29.81477 -27.20078 -26.98236 -25.50801 -22.82094 -22.02466 -20.64740 -19.63779 -17.14653 -16.48038 -15.90961 -15.37174 -14.79129 -14.61066 -13.93113 -13.67474 -13.37058 -13.23130 -13.05727 -12.57773 -12.41543 -12.24725 -12.06048 -11.72916 -11.50247 -11.25645 -11.11485 -11.01193 -10.88073 -10.46423 -10.37567 -10.27769 -9.89750 -9.23095 -9.06376 -8.81938 -8.71684 -7.04430 -6.36924 -6.13739 -4.52428 1.93900 2.23184 2.45343 3.10545 3.18056 3.21745 3.26663 4.16247 4.37640 4.51738 5.03402 5.09565 5.15233 5.41818 5.52855 5.64417 5.73519 5.78084 5.92893 5.95754 5.96799 5.97666 6.12463 6.15381 6.26754 6.36462 6.40755 6.52417 6.60648 6.87695 6.94521 7.21891 7.24183 7.52947 7.55813 7.70470 8.41443 8.71663 8.95368 9.18744 10.67871 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.029826 B = 0.005420 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.546454 B = 5164.558138 C = 5813.874004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.142 4.142 4 C -0.151 4.151 5 C -0.068 4.068 6 C -0.194 4.194 7 C 0.233 3.767 8 C -0.160 4.160 9 C -0.049 4.049 10 S -0.180 6.180 11 C -0.096 4.096 12 C 0.273 3.727 13 H 0.044 0.956 14 C -0.536 4.536 15 H 0.071 0.929 16 C 0.073 3.927 17 N -0.871 5.871 18 Si 0.901 3.099 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.281 1.281 22 N -0.705 5.705 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.267 0.733 36 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.019 3.094 -9.153 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.200 4.200 4 C -0.155 4.155 5 C -0.089 4.089 6 C -0.219 4.219 7 C 0.118 3.882 8 C -0.277 4.277 9 C -0.072 4.072 10 S 0.061 5.939 11 C -0.245 4.245 12 C 0.170 3.830 13 H 0.062 0.938 14 C -0.576 4.576 15 H 0.089 0.911 16 C -0.133 4.133 17 N -0.506 5.506 18 Si 0.728 3.272 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.207 1.207 22 N -0.327 5.327 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.125 2.593 -9.997 11.530 hybrid contribution -0.703 0.261 2.437 2.550 sum -5.827 2.854 -7.560 9.963 Atomic orbital electron populations 1.21851 0.95241 1.01668 1.01133 1.19872 0.95131 0.95428 0.95603 1.21852 1.01234 0.95742 1.01124 1.19183 1.03774 0.98479 0.94085 1.20516 0.98339 0.98419 0.91628 1.20735 1.05665 0.96951 0.98565 1.17881 0.92489 0.90588 0.87222 1.20711 1.10598 1.02067 0.94346 1.20364 0.96154 0.94692 0.96029 1.84778 1.62603 1.25573 1.20931 1.24234 1.05026 1.01888 0.93369 1.18826 0.86208 0.84713 0.93302 0.93846 1.21193 1.52088 0.94152 0.90134 0.91133 1.25153 0.93412 0.94884 0.99898 1.70017 1.46321 1.03360 1.30921 0.86386 0.77979 0.79656 0.83187 1.19405 1.20590 1.20700 1.45907 1.34759 1.46128 1.05943 0.92707 0.93194 0.92730 0.91309 0.92682 0.92668 0.93206 0.87179 0.86687 0.86871 0.87821 0.90336 0.92283 0.76362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.00 37.16 0.33 -1.24 16 2 C -0.04 -0.53 3.09 -91.77 -0.28 -0.81 16 3 C -0.14 -1.63 9.01 37.16 0.33 -1.29 16 4 C -0.15 -2.41 4.78 -104.66 -0.50 -2.91 16 5 C -0.07 -1.13 8.70 -39.65 -0.35 -1.47 16 6 C -0.19 -3.72 9.76 -39.26 -0.38 -4.10 16 7 C 0.23 5.00 6.53 -83.61 -0.55 4.46 16 8 C -0.16 -3.27 6.07 -38.98 -0.24 -3.51 16 9 C -0.05 -0.87 9.34 -39.34 -0.37 -1.23 16 10 S -0.18 -3.60 22.12 -107.50 -2.38 -5.98 16 11 C -0.10 -2.00 5.92 37.47 0.22 -1.77 16 12 C 0.27 6.56 2.64 -69.04 -0.18 6.38 16 13 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.54 -13.45 8.63 -34.44 -0.30 -13.75 16 15 H 0.07 1.73 7.75 -52.49 -0.41 1.32 16 16 C 0.07 1.85 5.17 -17.82 -0.09 1.76 16 17 N -0.87 -23.08 12.43 55.43 0.69 -22.39 16 18 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 N -0.70 -16.34 4.91 -53.17 -0.26 -16.60 16 23 H 0.05 0.60 7.38 -51.93 -0.38 0.22 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 27 H 0.05 0.63 7.40 -51.93 -0.38 0.24 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 1.55 7.10 -52.48 -0.37 1.17 16 31 H 0.12 2.12 8.05 -52.49 -0.42 1.70 16 32 H 0.11 1.84 7.94 -52.49 -0.42 1.42 16 33 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.40 9.60 7.60 -40.82 -0.31 9.29 16 LS Contribution 305.38 15.07 4.60 4.60 Total: -1.00 -25.92 305.38 -9.91 -35.83 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.20 Total: 9.51 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.34 Total: -19.51 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.43 Total: -38.99 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.38 Total: -5.98 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.92 -9.91 -35.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214180705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.136 kcal (2) G-P(sol) polarization free energy of solvation -25.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds