Wall clock time and date at job start Mon Mar 30 2020 06:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47281 * 2 1 4 4 C 1.50700 * 109.46936 * 120.00339 * 2 1 3 5 5 C 1.38273 * 120.04538 * 300.25472 * 4 2 1 6 6 C 1.38021 * 120.17271 * 180.14328 * 5 4 2 7 7 C 1.39311 * 120.45666 * 359.58080 * 6 5 4 8 8 C 1.39091 * 119.21601 * 0.36385 * 7 6 5 9 9 C 1.38106 * 120.04746 * 120.00118 * 4 2 1 10 10 S 1.76438 * 121.18471 * 179.54885 * 8 7 6 11 11 C 1.81689 * 102.56274 * 16.11980 * 10 8 7 12 12 C 1.53594 * 107.80301 * 312.94594 * 11 10 8 13 13 H 1.08996 * 109.75024 * 306.00924 * 12 11 10 14 14 C 1.50697 * 109.61136 * 185.57243 * 12 11 10 15 15 H 1.07995 * 120.00300 * 0.86365 * 14 12 11 16 16 C 1.37878 * 119.99849 * 180.86069 * 14 12 11 17 17 N 1.31516 * 119.99941 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99966 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47060 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.46901 * 120.00084 * 18 16 14 21 21 H 1.48501 * 109.46740 * 239.99807 * 18 16 14 22 22 N 1.39593 * 117.92436 * 180.74120 * 7 6 5 23 23 H 1.09003 * 109.46951 * 300.00252 * 1 2 3 24 24 H 1.08998 * 109.47306 * 60.00005 * 1 2 3 25 25 H 1.09001 * 109.47181 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46951 * 239.99748 * 2 1 3 27 27 H 1.09003 * 109.47334 * 59.99983 * 3 2 1 28 28 H 1.09002 * 109.47079 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46947 * 300.00215 * 3 2 1 30 30 H 1.08009 * 119.91413 * 359.86623 * 5 4 2 31 31 H 1.08002 * 119.77523 * 179.86701 * 6 5 4 32 32 H 1.07996 * 119.84968 * 359.95271 * 9 4 2 33 33 H 1.09002 * 109.79558 * 193.37047 * 11 10 8 34 34 H 1.08998 * 109.79694 * 72.52298 * 11 10 8 35 35 H 0.97002 * 119.99672 * 179.97438 * 17 16 14 36 36 H 0.96998 * 118.58826 * 17.87154 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6945 -0.2420 2.4868 6 6 2.1555 -0.8890 3.6154 7 6 2.9567 -2.0229 3.5017 8 6 3.2937 -2.4920 2.2364 9 6 2.8264 -1.8334 1.1048 10 16 4.3150 -3.9162 2.0321 11 6 4.2579 -4.6828 3.6784 12 6 4.5011 -3.5795 4.7189 13 1 5.4263 -3.0521 4.4871 14 6 4.5983 -4.1921 6.0923 15 1 4.5114 -5.2616 6.2140 16 6 4.7983 -3.3870 7.1936 17 7 4.9047 -2.0846 7.0454 18 14 4.9196 -4.1464 8.8960 19 1 4.7691 -5.6200 8.7926 20 1 6.2423 -3.8237 9.4888 21 1 3.8431 -3.5987 9.7601 22 7 3.3805 -2.6445 4.6776 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.0719 0.6351 2.5851 31 1 1.8894 -0.5163 4.5936 32 1 3.0857 -2.2013 0.1231 33 1 5.0346 -5.4434 3.7585 34 1 3.2795 -5.1348 3.8414 35 1 5.0450 -1.5181 7.8203 36 1 2.9105 -2.4465 5.5027 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214180705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:30 Heat of formation + Delta-G solvation = -8.840062 kcal Electronic energy + Delta-G solvation = -17452.019695 eV Core-core repulsion = 14832.308510 eV Total energy + Delta-G solvation = -2619.711185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48901 -38.05273 -35.81323 -34.00990 -32.05965 -31.37305 -28.71985 -27.85098 -27.36684 -24.27870 -23.49322 -22.24760 -20.96319 -18.99171 -18.04981 -17.42117 -16.91728 -16.49121 -16.13883 -15.24492 -15.15991 -14.79240 -14.58920 -14.39335 -14.20602 -13.78893 -13.56838 -13.42310 -13.08730 -12.94593 -12.88146 -12.79508 -12.32008 -12.18731 -11.98090 -11.81373 -11.49122 -11.36000 -10.93776 -10.81372 -10.48880 -10.31255 -8.62747 -8.29030 -7.76852 -6.52223 0.45714 0.75678 0.86461 1.38416 1.42014 1.52934 1.60804 2.34060 2.73008 2.93652 3.29166 3.92531 4.00634 4.16789 4.20766 4.29301 4.40549 4.47230 4.59689 4.64880 4.70629 4.91569 4.92589 5.05079 5.10698 5.13682 5.22513 5.31172 5.35164 5.45253 5.52225 5.57967 5.60700 5.78679 5.86265 6.14125 6.52574 6.92178 7.17176 7.23145 8.75378 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.029826 B = 0.005420 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.546454 B = 5164.558138 C = 5813.874004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.062 4.062 6 C -0.203 4.203 7 C 0.199 3.801 8 C -0.182 4.182 9 C -0.056 4.056 10 S -0.169 6.169 11 C -0.091 4.091 12 C 0.279 3.721 13 H -0.001 1.001 14 C -0.550 4.550 15 H 0.073 0.927 16 C 0.030 3.970 17 N -0.902 5.902 18 Si 0.968 3.032 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.278 1.278 22 N -0.718 5.718 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.268 0.732 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 3.787 -10.425 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.228 4.228 7 C 0.087 3.913 8 C -0.299 4.299 9 C -0.080 4.080 10 S 0.072 5.928 11 C -0.240 4.240 12 C 0.174 3.826 13 H 0.017 0.983 14 C -0.590 4.590 15 H 0.092 0.908 16 C -0.173 4.173 17 N -0.539 5.539 18 Si 0.793 3.207 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.204 1.204 22 N -0.342 5.342 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.133 0.867 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.435 3.294 -11.313 13.425 hybrid contribution -0.351 0.161 2.677 2.705 sum -6.786 3.455 -8.635 11.513 Atomic orbital electron populations 1.21832 0.93702 1.01689 1.02439 1.19979 0.96315 0.95840 0.93920 1.21842 1.00596 0.94935 1.02443 1.19675 1.01460 0.97184 0.95493 1.20852 0.97737 0.98752 0.90912 1.20912 1.05589 0.96586 0.99704 1.18163 0.94248 0.91854 0.87002 1.21016 1.11275 1.02715 0.94911 1.20669 0.96263 0.95147 0.95908 1.84579 1.63031 1.25575 1.19565 1.24082 1.05341 1.01187 0.93403 1.18491 0.85039 0.85220 0.93863 0.98329 1.21470 1.52116 0.94410 0.90999 0.90838 1.25886 0.92929 0.95143 1.03346 1.70136 1.47330 1.04602 1.31797 0.85356 0.77680 0.79023 0.78684 1.18718 1.20657 1.20393 1.45603 1.34960 1.47322 1.06274 0.92492 0.90906 0.93384 0.90401 0.92534 0.93715 0.90827 0.84101 0.86736 0.85207 0.86736 0.90297 0.92334 0.77394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.00 71.98 0.65 -1.92 16 2 C -0.04 -0.91 3.09 -11.54 -0.04 -0.95 16 3 C -0.14 -2.72 9.01 71.98 0.65 -2.07 16 4 C -0.13 -3.97 4.78 -19.89 -0.10 -4.07 16 5 C -0.06 -1.93 8.70 22.23 0.19 -1.74 16 6 C -0.20 -7.77 9.76 22.48 0.22 -7.56 16 7 C 0.20 8.74 6.53 38.37 0.25 8.99 16 8 C -0.18 -7.47 6.07 22.66 0.14 -7.33 16 9 C -0.06 -1.93 9.34 22.43 0.21 -1.72 16 10 S -0.17 -6.77 22.12 -56.49 -1.25 -8.02 16 11 C -0.09 -3.87 5.92 72.18 0.43 -3.44 16 12 C 0.28 13.92 2.64 44.54 0.12 14.04 16 13 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 14 C -0.55 -28.37 8.63 25.60 0.22 -28.15 16 15 H 0.07 3.65 7.75 -2.91 -0.02 3.63 16 16 C 0.03 1.56 5.17 84.65 0.44 2.00 16 17 N -0.90 -49.27 12.43 21.45 0.27 -49.01 16 18 Si 0.97 40.61 29.54 68.60 2.03 42.64 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 22 N -0.72 -34.66 4.91 -322.14 -1.58 -36.24 16 23 H 0.06 1.03 7.38 -2.39 -0.02 1.01 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.59 7.87 -2.39 -0.02 1.57 16 27 H 0.06 1.08 7.40 -2.39 -0.02 1.06 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.14 3.50 7.10 -2.91 -0.02 3.48 16 31 H 0.11 4.29 8.05 -2.91 -0.02 4.27 16 32 H 0.13 3.96 7.94 -2.91 -0.02 3.93 16 33 H 0.11 4.51 8.14 -2.39 -0.02 4.49 16 34 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 36 H 0.39 19.70 7.60 -92.71 -0.70 18.99 16 Total: -1.00 -56.77 305.38 3.21 -53.56 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.37 Total: 30.97 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 3.38 Total: -33.91 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.31 Total: -85.24 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -1.25 Total: -8.02 kcal Total: -56.77 3.21 -53.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214180705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.722 kcal (2) G-P(sol) polarization free energy of solvation -56.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds