Wall clock time and date at job start Mon Mar 30 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47424 * 2 1 4 4 C 1.37853 * 119.57424 * 94.03679 * 3 2 1 5 5 C 1.38235 * 120.21491 * 179.97438 * 4 3 2 6 6 C 1.38091 * 119.63341 * 0.38003 * 5 4 3 7 7 C 1.39044 * 120.47199 * 359.86818 * 6 5 4 8 8 C 1.38977 * 120.25337 * 359.51571 * 7 6 5 9 9 N 1.39116 * 124.91209 * 181.07676 * 8 7 6 10 10 C 1.45620 * 116.56124 * 335.07463 * 9 8 7 11 11 H 1.08996 * 109.53123 * 302.56456 * 10 9 8 12 12 C 1.53003 * 109.53171 * 182.40884 * 10 9 8 13 13 C 1.50698 * 109.47157 * 64.99789 * 12 10 9 14 14 H 1.07994 * 120.00038 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99776 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99644 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00117 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.46873 * 90.00132 * 17 15 13 19 19 H 1.48501 * 109.47085 * 209.99787 * 17 15 13 20 20 H 1.48492 * 109.47345 * 330.00284 * 17 15 13 21 21 C 1.53740 * 109.08844 * 62.44880 * 10 9 8 22 22 S 1.76625 * 118.30603 * 179.41403 * 7 6 5 23 23 H 1.08998 * 109.47023 * 300.00382 * 1 2 3 24 24 H 1.09008 * 109.47050 * 59.99363 * 1 2 3 25 25 H 1.08996 * 109.47731 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47023 * 239.99618 * 2 1 3 27 27 H 1.08998 * 109.47145 * 120.00050 * 2 1 3 28 28 H 1.08006 * 119.89236 * 359.96884 * 4 3 2 29 29 H 1.08007 * 120.18376 * 180.39115 * 5 4 3 30 30 H 1.07999 * 119.76500 * 179.89485 * 6 5 4 31 31 H 1.00901 * 110.99997 * 206.67998 * 9 8 7 32 32 H 1.09001 * 109.47015 * 185.00239 * 12 10 9 33 33 H 1.09000 * 109.47068 * 305.00150 * 12 10 9 34 34 H 0.97004 * 119.99618 * 180.02562 * 16 15 13 35 35 H 1.08998 * 109.99616 * 48.58057 * 21 10 9 36 36 H 1.09001 * 109.99320 * 169.95589 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3388 2.0341 1.1960 5 6 2.8012 3.3367 1.2113 6 6 2.9471 4.0235 0.0223 7 6 2.6352 3.4132 -1.1875 8 6 2.1819 2.0996 -1.2126 9 7 1.8632 1.3893 -2.3655 10 6 1.4767 2.1754 -3.5287 11 1 0.6205 2.8013 -3.2775 12 6 1.1051 1.2378 -4.6793 13 6 -0.1230 0.4479 -4.3069 14 1 -0.5919 0.5997 -3.3460 15 6 -0.6487 -0.4679 -5.1935 16 7 -1.7208 -1.1570 -4.8687 17 14 0.1619 -0.7300 -6.8559 18 1 1.1865 -1.7992 -6.7440 19 1 -0.8657 -1.1314 -7.8499 20 1 0.8094 0.5320 -7.2954 21 6 2.6580 3.0650 -3.9494 22 16 2.8283 4.3497 -2.6725 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.2172 1.4951 2.1240 29 1 3.0471 3.8147 2.1482 30 1 3.3066 5.0419 0.0319 31 1 1.1809 0.6717 -2.1711 32 1 0.9020 1.8247 -5.5751 33 1 1.9319 0.5543 -4.8725 34 1 -2.0904 -1.8015 -5.4923 35 1 3.5705 2.4713 -4.0047 36 1 2.4524 3.5251 -4.9159 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214181552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:53 Heat of formation + Delta-G solvation = 10.347158 kcal Electronic energy + Delta-G solvation = -17846.135024 eV Core-core repulsion = 15227.255858 eV Total energy + Delta-G solvation = -2618.879165 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.76645 -36.69445 -34.03571 -32.94791 -31.35945 -29.41534 -28.37738 -27.84742 -23.74040 -23.36777 -22.12341 -20.53363 -19.66286 -17.29535 -17.03429 -16.37323 -16.07775 -15.16509 -14.45242 -14.23221 -13.95043 -13.50014 -13.31718 -13.02071 -12.86377 -12.52629 -12.25383 -12.11283 -11.96563 -11.76409 -11.52655 -11.17631 -10.96081 -10.71165 -10.56167 -10.27356 -10.08997 -9.83290 -9.48678 -9.41153 -9.13459 -8.69785 -7.65020 -6.83742 -6.20785 -4.21787 1.49067 1.66951 1.93253 2.65688 3.21383 3.29746 3.31151 3.86417 4.29895 4.34963 4.94078 5.08534 5.11214 5.15499 5.36539 5.40736 5.42710 5.58212 5.61944 5.67380 5.81033 5.90052 6.11671 6.14231 6.17261 6.24396 6.27700 6.41317 6.56821 6.59441 6.79203 6.92294 7.00870 7.11320 7.53932 7.65949 7.74590 8.29288 8.77346 9.39851 10.91438 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.007132 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.073920 B = 3924.759871 C = 5011.092342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.087 4.087 5 C -0.155 4.155 6 C -0.073 4.073 7 C -0.131 4.131 8 C 0.160 3.840 9 N -0.638 5.638 10 C 0.108 3.892 11 H 0.061 0.939 12 C -0.007 4.007 13 C -0.531 4.531 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.894 5.894 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.095 4.095 22 S -0.156 6.156 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.391 0.609 32 H 0.031 0.969 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.095 0.905 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.077 6.353 8.548 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.133 4.133 4 C -0.108 4.108 5 C -0.176 4.176 6 C -0.096 4.096 7 C -0.247 4.247 8 C 0.051 3.949 9 N -0.266 5.266 10 C -0.001 4.001 11 H 0.079 0.921 12 C -0.046 4.046 13 C -0.569 4.569 14 H 0.089 0.911 15 C -0.128 4.128 16 N -0.532 5.532 17 Si 0.707 3.293 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.244 4.244 22 S 0.086 5.914 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.225 0.775 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.687 7.354 7.886 13.847 hybrid contribution -0.522 -1.413 -0.503 1.588 sum 8.165 5.942 7.383 12.509 Atomic orbital electron populations 1.21760 0.94505 1.02252 1.02109 1.20505 0.96325 0.92447 1.03109 1.19825 1.04733 0.97125 0.91646 1.20729 0.98432 0.94914 0.96723 1.20754 1.04538 0.95209 0.97131 1.20577 0.99225 0.99236 0.90581 1.20935 1.11466 0.95285 0.97012 1.18416 0.96164 0.90473 0.89848 1.55068 1.49622 1.17958 1.03978 1.21549 0.93266 0.94446 0.90818 0.92107 1.19722 0.97679 0.94633 0.92612 1.20934 1.10260 1.21578 1.04113 0.91106 1.24962 0.94510 0.95055 0.98313 1.69902 1.21683 1.25066 1.36539 0.86769 0.79364 0.79092 0.84027 1.20120 1.21279 1.18988 1.24116 1.03136 0.98048 0.99054 1.85210 1.91794 1.16377 0.98012 0.92932 0.92151 0.91981 0.90260 0.91115 0.86299 0.86178 0.86156 0.77481 0.95052 0.95524 0.92480 0.88661 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.68 37.16 0.36 -1.90 16 2 C -0.09 -1.27 5.33 -27.88 -0.15 -1.42 16 3 C -0.13 -2.03 5.16 -104.19 -0.54 -2.57 16 4 C -0.09 -1.20 9.63 -39.72 -0.38 -1.58 16 5 C -0.16 -2.05 10.06 -39.64 -0.40 -2.45 16 6 C -0.07 -1.07 9.68 -39.34 -0.38 -1.45 16 7 C -0.13 -2.24 6.05 -39.01 -0.24 -2.47 16 8 C 0.16 2.85 6.31 -83.71 -0.53 2.32 16 9 N -0.64 -12.19 5.56 -52.24 -0.29 -12.48 16 10 C 0.11 2.11 2.38 -68.02 -0.16 1.95 16 11 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 12 C -0.01 -0.16 3.72 -27.88 -0.10 -0.27 16 13 C -0.53 -13.86 8.86 -34.44 -0.31 -14.16 16 14 H 0.07 1.98 7.45 -52.49 -0.39 1.58 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 17 Si 0.88 20.58 27.47 -169.99 -4.67 15.91 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 21 C -0.09 -1.59 6.06 37.54 0.23 -1.36 16 22 S -0.16 -2.55 22.13 -107.50 -2.38 -4.93 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.07 7.10 -51.92 -0.37 0.70 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.08 1.27 6.90 -51.93 -0.36 0.91 16 27 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 28 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 29 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.39 7.83 3.82 -39.29 -0.15 7.68 16 32 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 33 H 0.03 0.59 7.57 -51.93 -0.39 0.20 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.11 1.70 8.13 -51.93 -0.42 1.28 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -28.02 299.43 -9.74 -37.76 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.00 Total: 7.81 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.69 Total: -23.43 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.48 Total: -37.64 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.38 Total: -4.93 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.02 -9.74 -37.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214181552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.110 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds