Wall clock time and date at job start Mon Mar 30 2020 06:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47424 * 2 1 4 4 C 1.37853 * 119.57424 * 94.03679 * 3 2 1 5 5 C 1.38235 * 120.21491 * 179.97438 * 4 3 2 6 6 C 1.38091 * 119.63341 * 0.38003 * 5 4 3 7 7 C 1.39044 * 120.47199 * 359.86818 * 6 5 4 8 8 C 1.38977 * 120.25337 * 359.51571 * 7 6 5 9 9 N 1.39116 * 124.91209 * 181.07676 * 8 7 6 10 10 C 1.45620 * 116.56124 * 335.07463 * 9 8 7 11 11 H 1.08996 * 109.53123 * 302.56456 * 10 9 8 12 12 C 1.53003 * 109.53171 * 182.40884 * 10 9 8 13 13 C 1.50698 * 109.47157 * 64.99789 * 12 10 9 14 14 H 1.07994 * 120.00038 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99776 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99644 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00117 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.46873 * 90.00132 * 17 15 13 19 19 H 1.48501 * 109.47085 * 209.99787 * 17 15 13 20 20 H 1.48492 * 109.47345 * 330.00284 * 17 15 13 21 21 C 1.53740 * 109.08844 * 62.44880 * 10 9 8 22 22 S 1.76625 * 118.30603 * 179.41403 * 7 6 5 23 23 H 1.08998 * 109.47023 * 300.00382 * 1 2 3 24 24 H 1.09008 * 109.47050 * 59.99363 * 1 2 3 25 25 H 1.08996 * 109.47731 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47023 * 239.99618 * 2 1 3 27 27 H 1.08998 * 109.47145 * 120.00050 * 2 1 3 28 28 H 1.08006 * 119.89236 * 359.96884 * 4 3 2 29 29 H 1.08007 * 120.18376 * 180.39115 * 5 4 3 30 30 H 1.07999 * 119.76500 * 179.89485 * 6 5 4 31 31 H 1.00901 * 110.99997 * 206.67998 * 9 8 7 32 32 H 1.09001 * 109.47015 * 185.00239 * 12 10 9 33 33 H 1.09000 * 109.47068 * 305.00150 * 12 10 9 34 34 H 0.97004 * 119.99618 * 180.02562 * 16 15 13 35 35 H 1.08998 * 109.99616 * 48.58057 * 21 10 9 36 36 H 1.09001 * 109.99320 * 169.95589 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3388 2.0341 1.1960 5 6 2.8012 3.3367 1.2113 6 6 2.9471 4.0235 0.0223 7 6 2.6352 3.4132 -1.1875 8 6 2.1819 2.0996 -1.2126 9 7 1.8632 1.3893 -2.3655 10 6 1.4767 2.1754 -3.5287 11 1 0.6205 2.8013 -3.2775 12 6 1.1051 1.2378 -4.6793 13 6 -0.1230 0.4479 -4.3069 14 1 -0.5919 0.5997 -3.3460 15 6 -0.6487 -0.4679 -5.1935 16 7 -1.7208 -1.1570 -4.8687 17 14 0.1619 -0.7300 -6.8559 18 1 1.1865 -1.7992 -6.7440 19 1 -0.8657 -1.1314 -7.8499 20 1 0.8094 0.5320 -7.2954 21 6 2.6580 3.0650 -3.9494 22 16 2.8283 4.3497 -2.6725 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.2172 1.4951 2.1240 29 1 3.0471 3.8147 2.1482 30 1 3.3066 5.0419 0.0319 31 1 1.1809 0.6717 -2.1711 32 1 0.9020 1.8247 -5.5751 33 1 1.9319 0.5543 -4.8725 34 1 -2.0904 -1.8015 -5.4923 35 1 3.5705 2.4713 -4.0047 36 1 2.4524 3.5251 -4.9159 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214181552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:52 Heat of formation + Delta-G solvation = -4.409232 kcal Electronic energy + Delta-G solvation = -17846.774909 eV Core-core repulsion = 15227.255858 eV Total energy + Delta-G solvation = -2619.519050 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.01796 -38.10561 -35.28347 -34.83878 -32.89830 -30.62154 -30.02834 -29.19454 -25.25138 -24.74863 -23.54436 -21.77563 -21.16662 -19.17238 -18.30083 -17.84505 -17.39073 -16.67180 -16.00069 -15.65638 -15.20326 -14.87572 -14.63650 -14.53331 -14.26568 -14.07839 -13.75747 -13.54534 -13.38618 -13.12437 -12.87769 -12.71862 -12.40176 -12.20121 -11.86670 -11.80943 -11.72021 -11.53594 -11.04364 -10.91808 -10.77901 -10.42999 -8.90384 -8.31024 -8.13716 -6.35786 0.31278 0.46882 0.66680 1.35510 1.36873 1.38338 1.48551 2.34245 2.65112 2.95588 3.12069 3.65078 3.76340 3.99569 4.06823 4.13962 4.21368 4.29239 4.44833 4.50307 4.56800 4.60460 4.68188 4.69844 4.91945 5.01089 5.05461 5.12620 5.22685 5.31081 5.33686 5.46738 5.55330 5.64710 5.93269 6.15860 6.18779 6.37965 6.68311 7.28519 8.84601 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.007132 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.073920 B = 3924.759871 C = 5011.092342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.085 4.085 5 C -0.142 4.142 6 C -0.080 4.080 7 C -0.153 4.153 8 C 0.126 3.874 9 N -0.646 5.646 10 C 0.114 3.886 11 H 0.037 0.963 12 C -0.002 4.002 13 C -0.529 4.529 14 H 0.036 0.964 15 C 0.016 3.984 16 N -0.942 5.942 17 Si 0.945 3.055 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.244 1.244 21 C -0.091 4.091 22 S -0.147 6.147 23 H 0.070 0.930 24 H 0.022 0.978 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.152 0.848 29 H 0.158 0.842 30 H 0.139 0.861 31 H 0.380 0.620 32 H 0.040 0.960 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.098 0.902 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.005 7.404 9.564 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.144 4.144 4 C -0.105 4.105 5 C -0.162 4.162 6 C -0.104 4.104 7 C -0.269 4.269 8 C 0.019 3.981 9 N -0.274 5.274 10 C 0.005 3.995 11 H 0.055 0.945 12 C -0.041 4.041 13 C -0.567 4.567 14 H 0.054 0.946 15 C -0.183 4.183 16 N -0.582 5.582 17 Si 0.768 3.232 18 H -0.195 1.195 19 H -0.213 1.213 20 H -0.167 1.167 21 C -0.240 4.240 22 S 0.095 5.905 23 H 0.089 0.911 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.169 0.831 29 H 0.176 0.824 30 H 0.156 0.844 31 H 0.211 0.789 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.643 8.440 8.923 16.252 hybrid contribution -1.159 -1.684 -0.611 2.134 sum 9.484 6.756 8.312 14.306 Atomic orbital electron populations 1.21697 0.95235 1.02048 1.01036 1.20470 0.95544 0.92361 1.03463 1.20059 1.04928 0.97478 0.91945 1.21139 0.97020 0.95349 0.96984 1.21230 1.02170 0.94789 0.98036 1.20921 0.98936 1.00185 0.90311 1.21239 1.12256 0.95290 0.98134 1.18655 0.98001 0.91397 0.90076 1.55150 1.49500 1.18024 1.04691 1.21310 0.93850 0.93941 0.90433 0.94545 1.19623 0.95737 0.94768 0.93971 1.21189 1.11224 1.21655 1.02640 0.94614 1.25852 0.95084 0.94904 1.02415 1.70049 1.23672 1.26340 1.38138 0.85741 0.78414 0.79920 0.79081 1.19505 1.21312 1.16722 1.24036 1.01779 0.97963 1.00176 1.85066 1.91786 1.15868 0.97733 0.91123 0.95909 0.91783 0.92381 0.88140 0.83063 0.82395 0.84353 0.78865 0.94179 0.95150 0.92478 0.88311 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.68 71.98 0.70 -3.73 16 2 C -0.08 -2.35 5.33 29.85 0.16 -2.19 16 3 C -0.14 -4.27 5.16 -19.59 -0.10 -4.37 16 4 C -0.08 -2.05 9.63 22.18 0.21 -1.84 16 5 C -0.14 -3.20 10.06 22.23 0.22 -2.97 16 6 C -0.08 -2.16 9.68 22.43 0.22 -1.95 16 7 C -0.15 -5.09 6.05 22.64 0.14 -4.95 16 8 C 0.13 4.50 6.31 38.53 0.24 4.74 16 9 N -0.65 -25.47 5.56 -319.20 -1.78 -27.25 16 10 C 0.11 4.54 2.38 45.41 0.11 4.65 16 11 H 0.04 1.59 8.05 -2.39 -0.02 1.57 16 12 C 0.00 -0.08 3.72 29.85 0.11 0.03 16 13 C -0.53 -28.67 8.86 25.60 0.23 -28.45 16 14 H 0.04 2.14 7.45 -2.91 -0.02 2.11 16 15 C 0.02 0.87 5.47 84.65 0.46 1.33 16 16 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 17 Si 0.94 42.45 27.47 68.60 1.88 44.33 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 20 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 21 C -0.09 -2.97 6.06 72.23 0.44 -2.54 16 22 S -0.15 -4.64 22.13 -56.49 -1.25 -5.89 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.02 0.85 7.10 -2.38 -0.02 0.83 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.93 6.90 -2.39 -0.02 1.91 16 27 H 0.10 2.28 8.05 -2.39 -0.02 2.26 16 28 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 29 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.38 16.16 3.82 -89.69 -0.34 15.82 16 32 H 0.04 1.71 7.20 -2.39 -0.02 1.69 16 33 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.13 3.74 8.13 -2.39 -0.02 3.72 16 Total: -1.00 -62.44 299.43 2.97 -59.47 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.67 Total: 27.93 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 3.14 Total: -42.23 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -1.48 Total: -83.61 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.33 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -1.25 Total: -5.89 kcal Total: -62.44 2.97 -59.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214181552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.060 kcal (2) G-P(sol) polarization free energy of solvation -62.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds