Wall clock time and date at job start Mon Mar 30 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46867 * 2 1 4 4 C 1.37865 * 119.58197 * 265.27310 * 3 2 1 5 5 C 1.38232 * 120.22114 * 180.42656 * 4 3 2 6 6 C 1.38088 * 119.63350 * 359.87898 * 5 4 3 7 7 C 1.39045 * 120.47089 * 359.89273 * 6 5 4 8 8 C 1.38969 * 120.25052 * 359.75376 * 7 6 5 9 9 N 1.39119 * 124.87155 * 181.52635 * 8 7 6 10 10 C 1.45627 * 116.50412 * 334.27461 * 9 8 7 11 11 H 1.08997 * 109.60075 * 302.81127 * 10 9 8 12 12 C 1.52999 * 109.54046 * 182.61118 * 10 9 8 13 13 C 1.53736 * 109.07753 * 62.72994 * 10 9 8 14 14 H 1.08999 * 109.98913 * 170.05030 * 13 10 9 15 15 C 1.50702 * 110.06432 * 48.73992 * 13 10 9 16 16 H 1.08005 * 119.99963 * 2.59068 * 15 13 10 17 17 C 1.37871 * 120.00190 * 182.59834 * 15 13 10 18 18 N 1.31520 * 120.00104 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99903 * 359.97438 * 17 15 13 20 20 H 1.48501 * 109.47083 * 90.00679 * 19 17 15 21 21 H 1.48506 * 109.47422 * 209.99972 * 19 17 15 22 22 H 1.48499 * 109.47282 * 330.00372 * 19 17 15 23 23 S 1.76631 * 118.31590 * 179.25306 * 7 6 5 24 24 H 1.09000 * 109.46820 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47220 * 300.00015 * 1 2 3 26 26 H 1.08996 * 109.47079 * 60.00431 * 1 2 3 27 27 H 1.08996 * 109.47665 * 239.99797 * 2 1 3 28 28 H 1.09001 * 109.47501 * 119.99714 * 2 1 3 29 29 H 1.08005 * 119.88917 * 0.18858 * 4 3 2 30 30 H 1.08002 * 120.18716 * 180.16174 * 5 4 3 31 31 H 1.08004 * 119.76630 * 179.97438 * 6 5 4 32 32 H 1.00906 * 111.00088 * 102.61645 * 9 8 7 33 33 H 1.09005 * 109.46791 * 300.40699 * 12 10 9 34 34 H 1.09000 * 109.47025 * 60.39834 * 12 10 9 35 35 H 1.08992 * 109.47236 * 180.40134 * 12 10 9 36 36 H 0.97001 * 119.99600 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3523 2.0296 -1.1949 5 6 2.8225 3.3294 -1.2095 6 6 2.9678 4.0164 -0.0205 7 6 2.6426 3.4106 1.1881 8 6 2.1623 2.1067 1.2108 9 7 1.7801 1.4198 2.3586 10 6 2.3994 1.8440 3.6064 11 1 3.4836 1.7729 3.5192 12 6 1.9180 0.9460 4.7478 13 6 2.0013 3.3005 3.8953 14 1 2.3074 3.5774 4.9041 15 6 0.5112 3.4687 3.7453 16 1 -0.1078 2.6150 3.5116 17 6 -0.0619 4.7122 3.9063 18 7 -1.3624 4.8589 3.7759 19 14 1.0085 6.1886 4.3111 20 1 1.4588 6.8337 3.0517 21 1 0.2257 7.1626 5.1136 22 1 2.1920 5.7434 5.0899 23 16 2.8695 4.3347 2.6762 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2388 1.4878 -2.1223 30 1 3.0705 3.8066 -2.1461 31 1 3.3354 5.0319 -0.0294 32 1 0.7751 1.3912 2.4451 33 1 0.8335 1.0157 4.8322 34 1 2.2008 -0.0863 4.5419 35 1 2.3767 1.2689 5.6823 36 1 -1.7656 5.7338 3.8896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214181680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:45 Heat of formation + Delta-G solvation = 13.682896 kcal Electronic energy + Delta-G solvation = -18331.420252 eV Core-core repulsion = 15712.685735 eV Total energy + Delta-G solvation = -2618.734517 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.36021 -36.63576 -33.73451 -32.88214 -31.22631 -29.14522 -28.23525 -27.19878 -23.94773 -23.27198 -21.96284 -20.34883 -19.59619 -17.53893 -16.48935 -15.89045 -15.54154 -14.90371 -14.62661 -13.71216 -13.62340 -13.44150 -13.31218 -12.92877 -12.74653 -12.24171 -12.05784 -11.78125 -11.69165 -11.50184 -11.34307 -11.06311 -10.73514 -10.65464 -10.35373 -10.24469 -10.12248 -10.06114 -9.32047 -9.00221 -8.74494 -8.37368 -7.39010 -6.51728 -6.34278 -4.40822 1.86559 1.92995 2.62189 3.16774 3.36778 3.40307 3.62105 4.21495 4.29419 4.61592 5.13686 5.23711 5.35589 5.58444 5.59074 5.73502 5.75950 5.78193 5.86831 5.92291 6.01380 6.09185 6.24060 6.28514 6.37591 6.42838 6.52235 6.60401 6.68575 6.72558 6.88082 6.89894 7.07773 7.20635 7.39743 7.81981 8.01356 8.11160 8.51312 9.17999 10.64690 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.009411 C = 0.008250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.134958 B = 2974.487871 C = 3393.140636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C -0.084 4.084 4 C -0.124 4.124 5 C -0.130 4.130 6 C -0.103 4.103 7 C -0.067 4.067 8 C 0.132 3.868 9 N -0.636 5.636 10 C 0.104 3.896 11 H 0.073 0.927 12 C -0.132 4.132 13 C 0.028 3.972 14 H 0.078 0.922 15 C -0.500 4.500 16 H 0.084 0.916 17 C 0.096 3.904 18 N -0.865 5.865 19 Si 0.873 3.127 20 H -0.255 1.255 21 H -0.287 1.287 22 H -0.262 1.262 23 S -0.264 6.264 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.367 0.633 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.713 -6.717 -5.074 10.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.127 4.127 7 C -0.183 4.183 8 C 0.027 3.973 9 N -0.269 5.269 10 C -0.007 4.007 11 H 0.091 0.909 12 C -0.191 4.191 13 C -0.097 4.097 14 H 0.095 0.905 15 C -0.543 4.543 16 H 0.101 0.899 17 C -0.115 4.115 18 N -0.500 5.500 19 Si 0.701 3.299 20 H -0.179 1.179 21 H -0.215 1.215 22 H -0.187 1.187 23 S -0.014 6.014 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.199 0.801 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.609 -5.941 -4.781 10.091 hybrid contribution -0.635 0.767 0.037 0.996 sum 5.974 -5.175 -4.744 9.218 Atomic orbital electron populations 1.21687 0.95361 1.00915 1.02122 1.20356 0.95606 0.92778 1.02242 1.19796 1.01378 0.95984 0.91607 1.20652 1.01861 0.95343 0.96708 1.20800 1.02131 0.95110 0.96959 1.20697 1.01697 0.99361 0.90920 1.21489 1.05331 0.94510 0.97003 1.18075 0.99744 0.88968 0.90496 1.55991 1.14774 1.54710 1.01408 1.21462 0.97711 0.93020 0.88498 0.90900 1.21712 1.02655 0.98113 0.96578 1.22501 0.98813 0.94045 0.94386 0.90489 1.20825 0.88219 0.96380 1.48896 0.89866 1.24999 0.94766 0.99278 0.92418 1.69893 1.10308 1.24922 1.44827 0.86555 0.80568 0.82757 0.80030 1.17942 1.21453 1.18740 1.85544 1.71183 1.40379 1.04328 0.93005 0.92354 0.93175 0.92339 0.90059 0.86773 0.86615 0.86671 0.80082 0.91375 0.92844 0.92342 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 37.16 0.37 -1.64 16 2 C -0.07 -1.04 5.62 -27.88 -0.16 -1.20 16 3 C -0.08 -1.46 5.16 -104.19 -0.54 -1.99 16 4 C -0.12 -1.99 9.62 -39.72 -0.38 -2.38 16 5 C -0.13 -2.14 10.06 -39.64 -0.40 -2.54 16 6 C -0.10 -1.99 9.68 -39.34 -0.38 -2.37 16 7 C -0.07 -1.46 6.03 -39.01 -0.24 -1.69 16 8 C 0.13 2.65 6.09 -83.71 -0.51 2.14 16 9 N -0.64 -12.13 4.33 -52.25 -0.23 -12.35 16 10 C 0.10 2.00 2.72 -68.02 -0.18 1.81 16 11 H 0.07 1.40 8.05 -51.93 -0.42 0.98 16 12 C -0.13 -2.15 9.30 37.16 0.35 -1.80 16 13 C 0.03 0.62 1.83 -27.50 -0.05 0.57 16 14 H 0.08 1.76 7.29 -51.93 -0.38 1.38 16 15 C -0.50 -12.78 7.95 -34.44 -0.27 -13.06 16 16 H 0.08 2.23 6.22 -52.48 -0.33 1.90 16 17 C 0.10 2.60 5.45 -17.82 -0.10 2.50 16 18 N -0.87 -24.69 13.96 55.43 0.77 -23.92 16 19 Si 0.87 21.53 24.80 -169.99 -4.22 17.31 16 20 H -0.25 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.26 -6.32 6.57 56.52 0.37 -5.94 16 23 S -0.26 -6.10 17.79 -107.50 -1.91 -8.01 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.92 7.08 -51.93 -0.37 0.55 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 28 H 0.08 1.20 7.46 -51.93 -0.39 0.82 16 29 H 0.11 1.50 8.05 -52.48 -0.42 1.08 16 30 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 32 H 0.37 7.36 5.67 -39.29 -0.22 7.14 16 33 H 0.07 1.19 7.42 -51.93 -0.39 0.81 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 293.36 15.07 4.42 4.42 Total: -1.00 -27.98 293.36 -8.68 -36.66 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.03 Total: 7.52 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -2.49 Total: -21.64 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.55 Total: -36.27 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.22 Total: 17.31 kcal Atomic # 16 Polarization: -6.10 SS G_CDS: -1.91 Total: -8.01 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.98 -8.68 -36.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214181680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.347 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds