Wall clock time and date at job start Mon Mar 30 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46867 * 2 1 4 4 C 1.37865 * 119.58197 * 265.27310 * 3 2 1 5 5 C 1.38232 * 120.22114 * 180.42656 * 4 3 2 6 6 C 1.38088 * 119.63350 * 359.87898 * 5 4 3 7 7 C 1.39045 * 120.47089 * 359.89273 * 6 5 4 8 8 C 1.38969 * 120.25052 * 359.75376 * 7 6 5 9 9 N 1.39119 * 124.87155 * 181.52635 * 8 7 6 10 10 C 1.45627 * 116.50412 * 334.27461 * 9 8 7 11 11 H 1.08997 * 109.60075 * 302.81127 * 10 9 8 12 12 C 1.52999 * 109.54046 * 182.61118 * 10 9 8 13 13 C 1.53736 * 109.07753 * 62.72994 * 10 9 8 14 14 H 1.08999 * 109.98913 * 170.05030 * 13 10 9 15 15 C 1.50702 * 110.06432 * 48.73992 * 13 10 9 16 16 H 1.08005 * 119.99963 * 2.59068 * 15 13 10 17 17 C 1.37871 * 120.00190 * 182.59834 * 15 13 10 18 18 N 1.31520 * 120.00104 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99903 * 359.97438 * 17 15 13 20 20 H 1.48501 * 109.47083 * 90.00679 * 19 17 15 21 21 H 1.48506 * 109.47422 * 209.99972 * 19 17 15 22 22 H 1.48499 * 109.47282 * 330.00372 * 19 17 15 23 23 S 1.76631 * 118.31590 * 179.25306 * 7 6 5 24 24 H 1.09000 * 109.46820 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47220 * 300.00015 * 1 2 3 26 26 H 1.08996 * 109.47079 * 60.00431 * 1 2 3 27 27 H 1.08996 * 109.47665 * 239.99797 * 2 1 3 28 28 H 1.09001 * 109.47501 * 119.99714 * 2 1 3 29 29 H 1.08005 * 119.88917 * 0.18858 * 4 3 2 30 30 H 1.08002 * 120.18716 * 180.16174 * 5 4 3 31 31 H 1.08004 * 119.76630 * 179.97438 * 6 5 4 32 32 H 1.00906 * 111.00088 * 102.61645 * 9 8 7 33 33 H 1.09005 * 109.46791 * 300.40699 * 12 10 9 34 34 H 1.09000 * 109.47025 * 60.39834 * 12 10 9 35 35 H 1.08992 * 109.47236 * 180.40134 * 12 10 9 36 36 H 0.97001 * 119.99600 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3523 2.0296 -1.1949 5 6 2.8225 3.3294 -1.2095 6 6 2.9678 4.0164 -0.0205 7 6 2.6426 3.4106 1.1881 8 6 2.1623 2.1067 1.2108 9 7 1.7801 1.4198 2.3586 10 6 2.3994 1.8440 3.6064 11 1 3.4836 1.7729 3.5192 12 6 1.9180 0.9460 4.7478 13 6 2.0013 3.3005 3.8953 14 1 2.3074 3.5774 4.9041 15 6 0.5112 3.4687 3.7453 16 1 -0.1078 2.6150 3.5116 17 6 -0.0619 4.7122 3.9063 18 7 -1.3624 4.8589 3.7759 19 14 1.0085 6.1886 4.3111 20 1 1.4588 6.8337 3.0517 21 1 0.2257 7.1626 5.1136 22 1 2.1920 5.7434 5.0899 23 16 2.8695 4.3347 2.6762 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2388 1.4878 -2.1223 30 1 3.0705 3.8066 -2.1461 31 1 3.3354 5.0319 -0.0294 32 1 0.7751 1.3912 2.4451 33 1 0.8335 1.0157 4.8322 34 1 2.2008 -0.0863 4.5419 35 1 2.3767 1.2689 5.6823 36 1 -1.7656 5.7338 3.8896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214181680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:45 Heat of formation + Delta-G solvation = -1.610765 kcal Electronic energy + Delta-G solvation = -18332.083435 eV Core-core repulsion = 15712.685735 eV Total energy + Delta-G solvation = -2619.397700 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79816 -38.16835 -35.09393 -34.75838 -32.75564 -30.51133 -29.96213 -28.60907 -25.68786 -24.54837 -23.46897 -21.68004 -21.26151 -19.39720 -18.08273 -17.40225 -17.05472 -16.60968 -16.30681 -15.25051 -15.12846 -14.89518 -14.69772 -14.56545 -14.33115 -13.73503 -13.50315 -13.29301 -13.18332 -12.96241 -12.77901 -12.65994 -12.33947 -12.16921 -11.92907 -11.89301 -11.72349 -11.52372 -11.12878 -10.72118 -10.54221 -9.92004 -8.87721 -8.53154 -8.15769 -6.48564 0.40871 0.50934 0.88856 1.21299 1.37449 1.43957 1.80588 2.25644 2.81009 3.05332 3.16152 3.92435 4.04292 4.13429 4.24120 4.34922 4.40790 4.47216 4.55833 4.66296 4.69401 4.77190 4.80407 4.96835 5.06105 5.12057 5.16432 5.24829 5.29116 5.39859 5.44896 5.52257 5.55799 5.73555 5.94650 6.05892 6.25029 6.47025 6.56833 7.11910 8.60554 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.009411 C = 0.008250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.134958 B = 2974.487871 C = 3393.140636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.088 4.088 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.121 4.121 7 C -0.101 4.101 8 C 0.107 3.893 9 N -0.624 5.624 10 C 0.107 3.893 11 H 0.076 0.924 12 C -0.123 4.123 13 C 0.031 3.969 14 H 0.074 0.926 15 C -0.494 4.494 16 H 0.064 0.936 17 C 0.053 3.947 18 N -0.910 5.910 19 Si 0.916 3.084 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.256 1.256 23 S -0.291 6.291 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.115 0.885 32 H 0.359 0.641 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.917 -8.375 -6.953 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 C -0.091 4.091 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.145 4.145 7 C -0.216 4.216 8 C 0.002 3.998 9 N -0.255 5.255 10 C -0.004 4.004 11 H 0.094 0.906 12 C -0.182 4.182 13 C -0.095 4.095 14 H 0.092 0.908 15 C -0.536 4.536 16 H 0.082 0.918 17 C -0.153 4.153 18 N -0.547 5.547 19 Si 0.743 3.257 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.180 1.180 23 S -0.045 6.045 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.173 0.827 30 H 0.171 0.829 31 H 0.133 0.867 32 H 0.189 0.811 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.816 -7.618 -6.669 12.790 hybrid contribution -0.921 1.188 0.437 1.566 sum 6.894 -6.430 -6.232 11.301 Atomic orbital electron populations 1.21657 0.95129 1.02104 1.00861 1.20391 0.95612 0.90992 1.03475 1.20229 1.00483 0.97378 0.91052 1.21174 0.99514 0.95187 0.97730 1.21230 1.00365 0.95255 0.97195 1.20906 1.02366 0.99799 0.91385 1.21666 1.08204 0.95323 0.96413 1.18424 1.00468 0.88997 0.91862 1.56083 1.14043 1.54212 1.01202 1.21518 0.97916 0.91325 0.89667 0.90613 1.21660 1.01569 0.98934 0.96025 1.22439 0.96778 0.96304 0.93986 0.90834 1.20920 0.89663 0.95362 1.47690 0.91786 1.25558 0.95378 1.01309 0.93019 1.69970 1.11484 1.25306 1.47905 0.85886 0.79655 0.80847 0.79346 1.19197 1.21018 1.18028 1.85387 1.71225 1.41593 1.06256 0.90633 0.95070 0.92949 0.89367 0.90537 0.82746 0.82940 0.86717 0.81055 0.92948 0.90365 0.91050 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.89 71.98 0.71 -2.86 16 2 C -0.07 -1.72 5.62 29.85 0.17 -1.55 16 3 C -0.09 -2.81 5.16 -19.58 -0.10 -2.91 16 4 C -0.12 -3.22 9.62 22.18 0.21 -3.01 16 5 C -0.12 -3.56 10.06 22.23 0.22 -3.34 16 6 C -0.12 -4.53 9.68 22.43 0.22 -4.31 16 7 C -0.10 -4.32 6.03 22.64 0.14 -4.18 16 8 C 0.11 4.19 6.09 38.53 0.23 4.42 16 9 N -0.62 -23.50 4.33 -319.21 -1.38 -24.89 16 10 C 0.11 4.06 2.72 45.40 0.12 4.19 16 11 H 0.08 2.85 8.05 -2.39 -0.02 2.83 16 12 C -0.12 -3.89 9.30 71.98 0.67 -3.22 16 13 C 0.03 1.41 1.83 30.10 0.06 1.47 16 14 H 0.07 3.38 7.29 -2.39 -0.02 3.36 16 15 C -0.49 -25.91 7.95 25.60 0.20 -25.71 16 16 H 0.06 3.56 6.22 -2.91 -0.02 3.54 16 17 C 0.05 2.94 5.45 84.65 0.46 3.40 16 18 N -0.91 -53.63 13.96 21.45 0.30 -53.33 16 19 Si 0.92 45.37 24.80 68.60 1.70 47.07 16 20 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.26 -12.20 6.57 99.48 0.65 -11.55 16 23 S -0.29 -13.60 17.79 -56.49 -1.00 -14.60 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.03 0.95 7.08 -2.39 -0.02 0.93 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.76 8.04 -2.39 -0.02 1.74 16 28 H 0.08 2.05 7.46 -2.39 -0.02 2.04 16 29 H 0.15 3.10 8.05 -2.91 -0.02 3.08 16 30 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 31 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.36 14.56 5.67 -89.69 -0.51 14.05 16 33 H 0.05 1.82 7.42 -2.38 -0.02 1.80 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -61.92 293.36 3.44 -58.48 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.51 Total: 24.87 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 3.32 Total: -37.60 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -1.08 Total: -78.21 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.70 Total: 47.07 kcal Atomic # 16 Polarization: -13.60 SS G_CDS: -1.00 Total: -14.60 kcal Total: -61.92 3.44 -58.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214181680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.870 kcal (2) G-P(sol) polarization free energy of solvation -61.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds