Wall clock time and date at job start Mon Mar 30 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47172 * 2 1 4 4 C 1.37861 * 119.57285 * 264.97731 * 3 2 1 5 5 C 1.38240 * 120.21316 * 179.97438 * 4 3 2 6 6 C 1.38086 * 119.63510 * 359.68727 * 5 4 3 7 7 C 1.39049 * 120.46918 * 0.14459 * 6 5 4 8 8 C 1.38973 * 120.25737 * 0.40832 * 7 6 5 9 9 N 1.39117 * 124.90244 * 178.70370 * 8 7 6 10 10 C 1.45617 * 116.56648 * 25.04247 * 9 8 7 11 11 H 1.09005 * 109.54227 * 57.41045 * 10 9 8 12 12 C 1.52999 * 109.53591 * 177.64732 * 10 9 8 13 13 C 1.53744 * 109.08587 * 297.52818 * 10 9 8 14 14 H 1.08994 * 110.07292 * 311.35261 * 13 10 9 15 15 C 1.50702 * 109.99188 * 190.02530 * 13 10 9 16 16 H 1.08002 * 120.00299 * 2.68026 * 15 13 10 17 17 C 1.37884 * 119.99942 * 182.39584 * 15 13 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 S 1.76628 * 118.30547 * 180.45380 * 7 6 5 24 24 H 1.08995 * 109.46746 * 59.99835 * 1 2 3 25 25 H 1.09000 * 109.47444 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47060 * 300.00009 * 1 2 3 27 27 H 1.08999 * 109.46919 * 239.99257 * 2 1 3 28 28 H 1.09008 * 109.46896 * 119.99889 * 2 1 3 29 29 H 1.07994 * 119.89358 * 359.97041 * 4 3 2 30 30 H 1.07996 * 120.17897 * 179.72051 * 5 4 3 31 31 H 1.07995 * 119.76501 * 180.13466 * 6 5 4 32 32 H 1.00897 * 111.00129 * 256.64348 * 9 8 7 33 33 H 1.08994 * 109.47680 * 179.60675 * 12 10 9 34 34 H 1.09008 * 109.46787 * 299.60737 * 12 10 9 35 35 H 1.09004 * 109.46893 * 59.59935 * 12 10 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3581 2.0273 -1.1944 5 6 2.8197 3.3303 -1.2098 6 6 2.9467 4.0238 -0.0225 7 6 2.6167 3.4197 1.1856 8 6 2.1629 2.1064 1.2110 9 7 1.8311 1.4009 2.3632 10 6 1.4294 2.1917 3.5180 11 1 0.5756 2.8156 3.2536 12 6 1.0465 1.2589 4.6687 13 6 2.6044 3.0846 3.9492 14 1 3.5173 2.4932 4.0200 15 6 2.3027 3.7267 5.2788 16 1 1.3850 3.4903 5.7969 17 6 3.2010 4.6115 5.8367 18 7 4.3185 4.8994 5.2059 19 14 2.8306 5.4015 7.4884 20 1 1.5192 4.9148 7.9869 21 1 3.8942 5.0399 8.4597 22 1 2.7843 6.8776 7.3319 23 16 2.7893 4.3635 2.6686 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.2525 1.4827 -2.1210 30 1 3.0790 3.8033 -2.1454 31 1 3.3050 5.0425 -0.0324 32 1 2.5587 0.7464 2.6086 33 1 0.7527 1.8519 5.5348 34 1 0.2134 0.6265 4.3619 35 1 1.9006 0.6337 4.9292 36 1 4.9503 5.5222 5.5982 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214181732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:47 Heat of formation + Delta-G solvation = 9.892309 kcal Electronic energy + Delta-G solvation = -17887.450377 eV Core-core repulsion = 15268.551488 eV Total energy + Delta-G solvation = -2618.898889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.29391 -36.49847 -33.72154 -33.24349 -31.08729 -29.15027 -27.86414 -26.82475 -24.19637 -23.33580 -21.76847 -20.34440 -19.78707 -16.98228 -16.86357 -15.65008 -15.16788 -15.08661 -14.56040 -14.12582 -13.62761 -13.34539 -13.19204 -12.67872 -12.53068 -12.17851 -12.01056 -11.77438 -11.48481 -11.37067 -11.12996 -11.08225 -10.90982 -10.64316 -10.51340 -10.27337 -10.19594 -9.61158 -9.23984 -8.89883 -8.70096 -8.33468 -7.36788 -6.40254 -6.04092 -4.42752 1.90385 1.90988 2.88961 3.19317 3.22049 3.24691 3.97278 4.15983 4.23875 4.55160 5.11766 5.20738 5.33241 5.57654 5.67251 5.73905 5.76783 5.83261 5.94408 5.98553 6.08760 6.15804 6.23536 6.29749 6.49937 6.54437 6.56487 6.62842 6.79354 6.89034 6.91948 7.06117 7.09487 7.40012 7.53406 7.63234 7.89132 8.05240 8.53064 9.15728 10.66230 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.006843 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.254827 B = 4090.609835 C = 4898.138780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.079 4.079 4 C -0.136 4.136 5 C -0.125 4.125 6 C -0.106 4.106 7 C -0.110 4.110 8 C 0.105 3.895 9 N -0.646 5.646 10 C 0.095 3.905 11 H 0.080 0.920 12 C -0.126 4.126 13 C 0.063 3.937 14 H 0.048 0.952 15 C -0.491 4.491 16 H 0.080 0.920 17 C 0.067 3.933 18 N -0.844 5.844 19 Si 0.903 3.097 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.279 1.279 23 S -0.156 6.156 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.348 0.652 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 -6.867 -7.203 10.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 C -0.083 4.083 4 C -0.158 4.158 5 C -0.145 4.145 6 C -0.131 4.131 7 C -0.227 4.227 8 C -0.001 4.001 9 N -0.275 5.275 10 C -0.016 4.016 11 H 0.098 0.902 12 C -0.185 4.185 13 C -0.064 4.064 14 H 0.066 0.934 15 C -0.535 4.535 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.479 5.479 19 Si 0.729 3.271 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.205 1.205 23 S 0.098 5.902 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.175 0.825 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.185 -5.579 -7.084 9.941 hybrid contribution 0.651 -0.307 0.779 1.060 sum -3.534 -5.886 -6.305 9.321 Atomic orbital electron populations 1.21625 0.95125 1.00602 1.02132 1.20281 0.96050 0.92736 1.01412 1.19801 1.00458 0.96439 0.91595 1.20597 1.03139 0.95449 0.96607 1.20854 1.01624 0.94862 0.97166 1.20703 1.01813 0.99604 0.90989 1.22632 1.00791 0.98506 1.00752 1.18123 0.99230 0.92198 0.90517 1.55905 1.44273 1.22154 1.05209 1.21720 0.97793 0.93886 0.88180 0.90171 1.21728 1.00301 0.98619 0.97863 1.21909 0.96486 0.93389 0.94585 0.93408 1.20964 1.05849 1.26006 1.00722 0.90214 1.25242 0.94665 0.96075 0.98354 1.69986 1.08497 1.31879 1.37497 0.86332 0.78789 0.79299 0.82633 1.19175 1.20583 1.20521 1.86811 1.87352 1.21328 0.94690 0.93535 0.93418 0.91751 0.92547 0.91101 0.87011 0.86806 0.86606 0.82460 0.90536 0.93541 0.93176 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 37.16 0.37 -1.42 16 2 C -0.07 -0.92 5.65 -27.88 -0.16 -1.08 16 3 C -0.08 -1.32 5.16 -104.19 -0.54 -1.86 16 4 C -0.14 -2.12 9.62 -39.72 -0.38 -2.50 16 5 C -0.12 -2.03 10.06 -39.64 -0.40 -2.43 16 6 C -0.11 -2.04 9.68 -39.34 -0.38 -2.42 16 7 C -0.11 -2.36 6.05 -39.01 -0.24 -2.60 16 8 C 0.10 2.03 6.16 -83.71 -0.52 1.52 16 9 N -0.65 -11.76 4.63 -52.24 -0.24 -12.01 16 10 C 0.09 1.89 2.61 -68.02 -0.18 1.71 16 11 H 0.08 1.74 8.05 -51.93 -0.42 1.32 16 12 C -0.13 -2.17 9.03 37.16 0.34 -1.84 16 13 C 0.06 1.49 2.33 -27.49 -0.06 1.42 16 14 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.49 -12.33 7.95 -34.44 -0.27 -12.60 16 16 H 0.08 1.92 6.00 -52.49 -0.31 1.60 16 17 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 18 N -0.84 -23.07 12.21 55.43 0.68 -22.39 16 19 Si 0.90 19.87 29.54 -169.99 -5.02 14.84 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 S -0.16 -3.83 20.19 -107.50 -2.17 -6.00 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 28 H 0.07 0.97 7.20 -51.92 -0.37 0.60 16 29 H 0.11 1.44 8.05 -52.49 -0.42 1.02 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.35 6.02 8.41 -39.29 -0.33 5.69 16 33 H 0.08 1.37 6.10 -51.93 -0.32 1.05 16 34 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 302.51 15.07 4.56 4.56 Total: -1.00 -27.18 302.51 -9.82 -37.01 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.11 Total: 6.45 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -2.52 Total: -22.46 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.44 Total: -34.40 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -2.17 Total: -6.00 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.18 -9.82 -37.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214181732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.898 kcal (2) G-P(sol) polarization free energy of solvation -27.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds