Wall clock time and date at job start Mon Mar 30 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47172 * 2 1 4 4 C 1.37861 * 119.57285 * 264.97731 * 3 2 1 5 5 C 1.38240 * 120.21316 * 179.97438 * 4 3 2 6 6 C 1.38086 * 119.63510 * 359.68727 * 5 4 3 7 7 C 1.39049 * 120.46918 * 0.14459 * 6 5 4 8 8 C 1.38973 * 120.25737 * 0.40832 * 7 6 5 9 9 N 1.39117 * 124.90244 * 178.70370 * 8 7 6 10 10 C 1.45617 * 116.56648 * 25.04247 * 9 8 7 11 11 H 1.09005 * 109.54227 * 57.41045 * 10 9 8 12 12 C 1.52999 * 109.53591 * 177.64732 * 10 9 8 13 13 C 1.53744 * 109.08587 * 297.52818 * 10 9 8 14 14 H 1.08994 * 110.07292 * 311.35261 * 13 10 9 15 15 C 1.50702 * 109.99188 * 190.02530 * 13 10 9 16 16 H 1.08002 * 120.00299 * 2.68026 * 15 13 10 17 17 C 1.37884 * 119.99942 * 182.39584 * 15 13 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 S 1.76628 * 118.30547 * 180.45380 * 7 6 5 24 24 H 1.08995 * 109.46746 * 59.99835 * 1 2 3 25 25 H 1.09000 * 109.47444 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47060 * 300.00009 * 1 2 3 27 27 H 1.08999 * 109.46919 * 239.99257 * 2 1 3 28 28 H 1.09008 * 109.46896 * 119.99889 * 2 1 3 29 29 H 1.07994 * 119.89358 * 359.97041 * 4 3 2 30 30 H 1.07996 * 120.17897 * 179.72051 * 5 4 3 31 31 H 1.07995 * 119.76501 * 180.13466 * 6 5 4 32 32 H 1.00897 * 111.00129 * 256.64348 * 9 8 7 33 33 H 1.08994 * 109.47680 * 179.60675 * 12 10 9 34 34 H 1.09008 * 109.46787 * 299.60737 * 12 10 9 35 35 H 1.09004 * 109.46893 * 59.59935 * 12 10 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3581 2.0273 -1.1944 5 6 2.8197 3.3303 -1.2098 6 6 2.9467 4.0238 -0.0225 7 6 2.6167 3.4197 1.1856 8 6 2.1629 2.1064 1.2110 9 7 1.8311 1.4009 2.3632 10 6 1.4294 2.1917 3.5180 11 1 0.5756 2.8156 3.2536 12 6 1.0465 1.2589 4.6687 13 6 2.6044 3.0846 3.9492 14 1 3.5173 2.4932 4.0200 15 6 2.3027 3.7267 5.2788 16 1 1.3850 3.4903 5.7969 17 6 3.2010 4.6115 5.8367 18 7 4.3185 4.8994 5.2059 19 14 2.8306 5.4015 7.4884 20 1 1.5192 4.9148 7.9869 21 1 3.8942 5.0399 8.4597 22 1 2.7843 6.8776 7.3319 23 16 2.7893 4.3635 2.6686 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.2525 1.4827 -2.1210 30 1 3.0790 3.8033 -2.1454 31 1 3.3050 5.0425 -0.0324 32 1 2.5587 0.7464 2.6086 33 1 0.7527 1.8519 5.5348 34 1 0.2134 0.6265 4.3619 35 1 1.9006 0.6337 4.9292 36 1 4.9503 5.5222 5.5982 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214181732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:47 Heat of formation + Delta-G solvation = -3.996946 kcal Electronic energy + Delta-G solvation = -17888.052660 eV Core-core repulsion = 15268.551488 eV Total energy + Delta-G solvation = -2619.501172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72467 -38.05288 -35.18320 -34.85828 -32.66442 -30.47716 -29.51494 -28.31961 -25.96693 -24.56250 -23.29974 -21.71191 -21.34711 -18.83684 -18.41185 -17.16673 -16.81673 -16.66972 -16.08282 -15.67633 -14.98275 -14.90919 -14.39068 -14.22174 -14.09710 -13.71389 -13.44938 -13.18583 -12.91492 -12.86267 -12.81240 -12.63799 -12.34019 -12.07869 -11.97067 -11.73240 -11.56135 -11.34728 -10.98422 -10.65141 -10.44869 -9.87857 -8.86499 -8.32333 -7.90071 -6.44576 0.46799 0.50210 1.13805 1.39959 1.45749 1.52131 2.19740 2.32519 2.83304 3.05666 3.17020 3.94493 4.08749 4.15327 4.28775 4.42893 4.47941 4.57228 4.57636 4.70247 4.75097 4.83999 4.92150 5.05201 5.13718 5.18631 5.23714 5.32082 5.37605 5.45577 5.56003 5.59100 5.60732 5.73117 5.83864 6.05978 6.27075 6.53033 6.57698 7.18092 8.71668 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.006843 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.254827 B = 4090.609835 C = 4898.138780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 C -0.078 4.078 4 C -0.124 4.124 5 C -0.115 4.115 6 C -0.124 4.124 7 C -0.135 4.135 8 C 0.085 3.915 9 N -0.630 5.630 10 C 0.106 3.894 11 H 0.061 0.939 12 C -0.116 4.116 13 C 0.075 3.925 14 H 0.013 0.987 15 C -0.505 4.505 16 H 0.088 0.912 17 C 0.018 3.982 18 N -0.883 5.883 19 Si 0.968 3.032 20 H -0.254 1.254 21 H -0.276 1.276 22 H -0.285 1.285 23 S -0.232 6.232 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.110 0.890 32 H 0.353 0.647 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 -8.941 -8.908 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 C -0.082 4.082 4 C -0.145 4.145 5 C -0.135 4.135 6 C -0.148 4.148 7 C -0.251 4.251 8 C -0.020 4.020 9 N -0.259 5.259 10 C -0.005 4.005 11 H 0.079 0.921 12 C -0.175 4.175 13 C -0.052 4.052 14 H 0.031 0.969 15 C -0.548 4.548 16 H 0.106 0.894 17 C -0.188 4.188 18 N -0.518 5.518 19 Si 0.792 3.208 20 H -0.178 1.178 21 H -0.201 1.201 22 H -0.211 1.211 23 S 0.019 5.981 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.128 0.872 32 H 0.181 0.819 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.382 -7.689 -8.805 12.869 hybrid contribution 1.018 0.274 1.076 1.507 sum -4.363 -7.415 -7.729 11.565 Atomic orbital electron populations 1.21580 0.94440 1.01828 1.01181 1.20363 0.96462 0.90668 1.02785 1.20208 0.99362 0.97898 0.90734 1.21134 1.00481 0.95115 0.97765 1.21253 0.99991 0.95097 0.97188 1.20856 1.02482 0.99900 0.91587 1.22569 1.03906 0.99388 0.99249 1.18450 0.99687 0.91839 0.92019 1.55966 1.44206 1.21357 1.04356 1.21549 0.95414 0.93848 0.89725 0.92117 1.21644 1.01382 0.98185 0.96331 1.21757 0.96395 0.92925 0.94100 0.96870 1.21311 1.06027 1.25970 1.01502 0.89403 1.26066 0.94446 0.96612 1.01670 1.70142 1.09652 1.32889 1.39137 0.85337 0.79150 0.77766 0.78577 1.17755 1.20114 1.21109 1.86763 1.89257 1.23778 0.98295 0.93080 0.91140 0.94108 0.89732 0.91219 0.82823 0.83164 0.87240 0.81933 0.91285 0.90918 0.92669 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.89 71.98 0.71 -2.27 16 2 C -0.07 -1.54 5.65 29.85 0.17 -1.37 16 3 C -0.08 -2.40 5.16 -19.58 -0.10 -2.50 16 4 C -0.12 -3.34 9.62 22.18 0.21 -3.13 16 5 C -0.12 -3.40 10.06 22.23 0.22 -3.18 16 6 C -0.12 -4.75 9.68 22.43 0.22 -4.53 16 7 C -0.14 -5.93 6.05 22.64 0.14 -5.80 16 8 C 0.08 3.25 6.16 38.53 0.24 3.49 16 9 N -0.63 -22.78 4.63 -319.20 -1.48 -24.26 16 10 C 0.11 4.31 2.61 45.41 0.12 4.43 16 11 H 0.06 2.71 8.05 -2.38 -0.02 2.69 16 12 C -0.12 -3.93 9.03 71.98 0.65 -3.28 16 13 C 0.07 3.72 2.33 30.10 0.07 3.79 16 14 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 15 C -0.50 -26.20 7.95 25.60 0.20 -25.99 16 16 H 0.09 4.29 6.00 -2.91 -0.02 4.27 16 17 C 0.02 0.97 5.29 84.66 0.45 1.42 16 18 N -0.88 -50.52 12.21 21.45 0.26 -50.26 16 19 Si 0.97 41.69 29.54 68.60 2.03 43.71 16 20 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 23 S -0.23 -12.05 20.19 -56.49 -1.14 -13.19 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.57 8.03 -2.39 -0.02 1.55 16 28 H 0.07 1.68 7.20 -2.38 -0.02 1.66 16 29 H 0.15 2.95 8.05 -2.91 -0.02 2.93 16 30 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 32 H 0.35 12.10 8.41 -89.70 -0.75 11.35 16 33 H 0.07 2.43 6.10 -2.39 -0.01 2.42 16 34 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -62.29 302.51 3.29 -59.00 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.32 Total: 23.92 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 3.30 Total: -38.92 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.21 Total: -74.52 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: -12.05 SS G_CDS: -1.14 Total: -13.19 kcal Total: -62.29 3.29 -59.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214181732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.006 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds