Wall clock time and date at job start Mon Mar 30 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47310 * 2 1 4 4 C 1.37864 * 119.58153 * 94.54358 * 3 2 1 5 5 C 1.38235 * 120.21579 * 179.38464 * 4 3 2 6 6 C 1.38093 * 119.63278 * 0.90639 * 5 4 3 7 7 C 1.39049 * 120.47056 * 359.85065 * 6 5 4 8 8 C 1.38971 * 120.24673 * 359.36475 * 7 6 5 9 9 N 1.39128 * 124.87134 * 181.58829 * 8 7 6 10 10 C 1.45621 * 116.51021 * 334.36294 * 9 8 7 11 11 H 1.09000 * 109.53549 * 182.57425 * 10 9 8 12 12 C 1.53002 * 109.53493 * 302.81274 * 10 9 8 13 13 C 1.53743 * 109.08422 * 62.69229 * 10 9 8 14 14 H 1.08997 * 109.98688 * 48.69004 * 13 10 9 15 15 C 1.50707 * 109.98598 * 170.04533 * 13 10 9 16 16 H 1.07999 * 119.99433 * 5.32989 * 15 13 10 17 17 C 1.37874 * 120.00053 * 185.32537 * 15 13 10 18 18 N 1.31516 * 119.99859 * 5.15415 * 17 15 13 19 19 Si 1.86800 * 120.00018 * 185.14734 * 17 15 13 20 20 H 1.48502 * 109.46646 * 85.00288 * 19 17 15 21 21 H 1.48498 * 109.46813 * 205.00070 * 19 17 15 22 22 H 1.48496 * 109.47097 * 325.00323 * 19 17 15 23 23 S 1.76628 * 118.31028 * 179.00755 * 7 6 5 24 24 H 1.09000 * 109.47197 * 59.99868 * 1 2 3 25 25 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47090 * 299.99871 * 1 2 3 27 27 H 1.09006 * 109.47355 * 119.99757 * 2 1 3 28 28 H 1.08997 * 109.47491 * 240.00058 * 2 1 3 29 29 H 1.08000 * 119.88830 * 359.65937 * 4 3 2 30 30 H 1.07996 * 120.18718 * 180.59532 * 5 4 3 31 31 H 1.08008 * 119.76523 * 179.86594 * 6 5 4 32 32 H 1.00892 * 110.99940 * 206.01419 * 9 8 7 33 33 H 1.09002 * 109.47436 * 59.99772 * 12 10 9 34 34 H 1.08998 * 109.46848 * 179.97438 * 12 10 9 35 35 H 1.09000 * 109.46761 * 299.99918 * 12 10 9 36 36 H 0.96996 * 119.99867 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3488 2.0308 1.1952 5 6 2.8227 3.3292 1.2094 6 6 2.9599 4.0191 0.0211 7 6 2.6279 3.4158 -1.1869 8 6 2.1662 2.1052 -1.2112 9 7 1.8373 1.3990 -2.3639 10 6 1.4350 2.1901 -3.5184 11 1 1.1607 1.5258 -4.3378 12 6 0.2378 3.0670 -3.1457 13 6 2.6104 3.0818 -3.9509 14 1 3.5216 2.4880 -4.0229 15 6 2.3070 3.7254 -5.2794 16 1 1.3363 3.5934 -5.7341 17 6 3.2685 4.4827 -5.9142 18 7 4.4815 4.5606 -5.4120 19 14 2.8484 5.3979 -7.4875 20 1 2.2412 6.7103 -7.1495 21 1 4.0856 5.6141 -8.2797 22 1 1.8843 4.5968 -8.2837 23 16 2.8003 4.3595 -2.6699 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 2.2301 1.4908 2.1230 30 1 3.0796 3.8033 2.1452 31 1 3.3280 5.0345 0.0299 32 1 1.1595 0.6784 -2.1654 33 1 0.5155 3.7328 -2.3285 34 1 -0.0620 3.6589 -4.0103 35 1 -0.5925 2.4340 -2.8325 36 1 5.1581 5.0930 -5.8588 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214181843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:51 Heat of formation + Delta-G solvation = -2.935099 kcal Electronic energy + Delta-G solvation = -18041.138592 eV Core-core repulsion = 15421.683465 eV Total energy + Delta-G solvation = -2619.455127 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.99693 -37.99308 -35.35586 -34.93676 -32.37992 -30.51687 -29.62207 -28.66628 -25.86535 -24.75671 -23.41853 -22.10636 -20.78032 -18.98048 -18.12782 -17.60952 -16.82126 -16.57865 -15.82636 -15.31842 -15.20570 -14.95318 -14.63337 -14.38270 -14.19050 -14.10983 -13.61631 -13.04669 -13.01061 -12.96841 -12.82099 -12.59387 -12.43166 -12.19638 -11.94557 -11.77573 -11.62971 -11.33009 -10.97554 -10.75806 -10.44305 -10.05773 -8.68933 -8.34064 -7.74609 -6.44307 0.48352 0.59115 1.20416 1.40532 1.49208 1.51901 2.22094 2.32013 2.80152 3.12166 3.19594 3.87698 3.98644 4.09468 4.24344 4.33158 4.37791 4.45710 4.53550 4.58156 4.72197 4.77958 4.86981 4.99730 5.09068 5.11338 5.15606 5.21710 5.35313 5.39847 5.44312 5.54384 5.58742 5.72801 5.85463 6.04513 6.33345 6.48090 6.58400 7.17665 8.72310 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.030743 B = 0.006694 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.561430 B = 4181.996094 C = 4732.696591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.131 4.131 4 C -0.102 4.102 5 C -0.140 4.140 6 C -0.107 4.107 7 C -0.137 4.137 8 C 0.123 3.877 9 N -0.645 5.645 10 C 0.097 3.903 11 H 0.103 0.897 12 C -0.165 4.165 13 C 0.110 3.890 14 H 0.016 0.984 15 C -0.504 4.504 16 H 0.082 0.918 17 C 0.022 3.978 18 N -0.883 5.883 19 Si 0.969 3.031 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.254 1.254 23 S -0.244 6.244 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.112 0.888 32 H 0.373 0.627 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.948 -7.449 10.306 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.161 4.161 6 C -0.132 4.132 7 C -0.253 4.253 8 C 0.016 3.984 9 N -0.272 5.272 10 C -0.013 4.013 11 H 0.120 0.880 12 C -0.224 4.224 13 C -0.015 4.015 14 H 0.034 0.966 15 C -0.548 4.548 16 H 0.100 0.900 17 C -0.185 4.185 18 N -0.518 5.518 19 Si 0.793 3.207 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.178 1.178 23 S 0.006 5.994 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.130 0.870 32 H 0.202 0.798 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.985 -6.214 9.766 13.519 hybrid contribution -0.333 -0.125 -0.647 0.738 sum -7.318 -6.339 9.119 13.300 Atomic orbital electron populations 1.21738 0.93961 1.02721 1.01655 1.20513 0.96625 0.90987 1.03692 1.20123 1.04457 0.97826 0.91171 1.21041 0.98892 0.94917 0.97498 1.21147 1.02286 0.95516 0.97158 1.20861 1.01041 0.99826 0.91458 1.21755 1.08352 0.96523 0.98682 1.18366 0.99048 0.91033 0.89998 1.55187 1.48750 1.17893 1.05331 1.21586 0.94104 0.94536 0.91065 0.87951 1.22486 0.97017 1.00244 1.02611 1.21016 0.95538 0.91530 0.93408 0.96624 1.21160 1.00253 1.31756 1.01626 0.90007 1.26034 0.94336 0.96768 1.01348 1.70152 1.03336 1.37745 1.40590 0.85388 0.78134 0.78895 0.78332 1.20121 1.20675 1.17814 1.86422 1.89847 1.24329 0.98818 0.94209 0.90200 0.92094 0.88844 0.91344 0.82958 0.83426 0.87028 0.79795 0.92901 0.91742 0.91655 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.67 71.98 0.70 -1.95 16 2 C -0.08 -1.77 5.33 29.85 0.16 -1.61 16 3 C -0.13 -3.93 5.16 -19.58 -0.10 -4.03 16 4 C -0.10 -2.75 9.63 22.18 0.21 -2.54 16 5 C -0.14 -4.16 10.06 22.23 0.22 -3.93 16 6 C -0.11 -4.10 9.68 22.43 0.22 -3.88 16 7 C -0.14 -5.99 5.16 22.64 0.12 -5.88 16 8 C 0.12 4.72 5.61 38.53 0.22 4.94 16 9 N -0.65 -23.91 5.68 -319.19 -1.81 -25.72 16 10 C 0.10 3.97 3.10 45.41 0.14 4.11 16 11 H 0.10 3.91 8.12 -2.39 -0.02 3.89 16 12 C -0.16 -6.21 8.50 71.98 0.61 -5.59 16 13 C 0.11 5.66 2.31 30.10 0.07 5.73 16 14 H 0.02 0.94 8.11 -2.39 -0.02 0.92 16 15 C -0.50 -26.65 7.96 25.60 0.20 -26.45 16 16 H 0.08 4.06 7.29 -2.91 -0.02 4.04 16 17 C 0.02 1.19 5.31 84.65 0.45 1.64 16 18 N -0.88 -51.21 12.90 21.45 0.28 -50.93 16 19 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 23 S -0.24 -12.54 19.29 -56.49 -1.09 -13.63 16 24 H 0.04 0.82 7.05 -2.39 -0.02 0.81 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.64 8.04 -2.38 -0.02 1.63 16 28 H 0.07 1.60 6.94 -2.39 -0.02 1.58 16 29 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.37 11.12 5.29 -89.70 -0.47 10.65 16 33 H 0.05 2.21 5.27 -2.44 -0.01 2.20 16 34 H 0.06 2.51 7.28 -2.39 -0.02 2.49 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -64.31 296.52 3.22 -61.09 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.60 Total: 24.67 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 3.22 Total: -39.45 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -1.54 Total: -76.65 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: -12.54 SS G_CDS: -1.09 Total: -13.63 kcal Total: -64.31 3.22 -61.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214181843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.159 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds