Wall clock time and date at job start Mon Mar 30 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47220 * 2 1 4 4 C 1.50702 * 109.46709 * 120.00115 * 2 1 3 5 5 C 1.37863 * 119.58086 * 293.64109 * 4 2 1 6 6 C 1.38240 * 120.21107 * 180.27942 * 5 4 2 7 7 C 1.38089 * 119.64161 * 359.51060 * 6 5 4 8 8 C 1.39040 * 120.46763 * 359.87097 * 7 6 5 9 9 C 1.38980 * 120.24081 * 0.99446 * 8 7 6 10 10 N 1.39124 * 124.82761 * 178.02401 * 9 8 7 11 11 C 1.45628 * 116.45973 * 26.37040 * 10 9 8 12 12 H 1.09002 * 109.53350 * 56.95665 * 11 10 9 13 13 C 1.50704 * 109.53727 * 177.10648 * 11 10 9 14 14 H 1.08001 * 120.00042 * 119.99847 * 13 11 10 15 15 C 1.37872 * 119.99807 * 300.00791 * 13 11 10 16 16 N 1.31519 * 120.00377 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00003 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46861 * 59.99420 * 17 15 13 19 19 H 1.48493 * 109.47330 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46948 * 299.99702 * 17 15 13 21 21 C 1.53724 * 109.09166 * 297.06880 * 11 10 9 22 22 S 1.76615 * 118.32039 * 181.77055 * 8 7 6 23 23 H 1.08993 * 109.47091 * 300.00429 * 1 2 3 24 24 H 1.09001 * 109.46632 * 59.99911 * 1 2 3 25 25 H 1.09001 * 109.47084 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46890 * 239.99871 * 2 1 3 27 27 H 1.09001 * 109.46759 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46963 * 299.99947 * 3 2 1 29 29 H 1.09001 * 109.46845 * 59.99834 * 3 2 1 30 30 H 1.07994 * 119.89846 * 0.31012 * 5 4 2 31 31 H 1.07999 * 120.18043 * 179.49524 * 6 5 4 32 32 H 1.08008 * 119.76788 * 179.59489 * 7 6 5 33 33 H 1.00898 * 111.00020 * 154.67713 * 10 9 8 34 34 H 0.97000 * 119.99738 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.97765 * 189.84441 * 21 11 10 36 36 H 1.08992 * 109.98092 * 311.18731 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.8058 -0.1603 2.4741 6 6 2.2658 -0.7980 3.6111 7 6 2.9448 -1.9948 3.4955 8 6 3.1658 -2.5621 2.2455 9 6 2.7223 -1.9184 1.0964 10 7 2.9254 -2.3786 -0.2007 11 6 3.0952 -3.8161 -0.3601 12 1 2.2284 -4.3333 0.0514 13 6 3.2321 -4.1482 -1.8237 14 1 4.1272 -4.6317 -2.1863 15 6 2.2147 -3.8347 -2.6998 16 7 1.1246 -3.2462 -2.2582 17 14 2.3847 -4.2457 -4.5141 18 1 2.5581 -5.7117 -4.6754 19 1 1.1630 -3.8097 -5.2370 20 1 3.5679 -3.5430 -5.0721 21 6 4.3619 -4.2590 0.3898 22 16 3.9987 -4.1175 2.1667 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.2669 0.7716 2.5604 31 1 2.0952 -0.3624 4.5846 32 1 3.3108 -2.4915 4.3821 33 1 2.2145 -2.0270 -0.8245 34 1 0.4090 -3.0253 -2.8747 35 1 4.6005 -5.2927 0.1396 36 1 5.1965 -3.6089 0.1274 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214182373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:50 Heat of formation + Delta-G solvation = 10.852231 kcal Electronic energy + Delta-G solvation = -18176.782960 eV Core-core repulsion = 15557.925697 eV Total energy + Delta-G solvation = -2618.857264 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40841 -35.97673 -34.86735 -32.54235 -30.34818 -29.36084 -27.40414 -26.71453 -25.51620 -23.11824 -21.96341 -20.08903 -19.43477 -17.13602 -16.52681 -15.98031 -15.32538 -14.77718 -14.44759 -14.11623 -13.60785 -13.39184 -13.19580 -12.72847 -12.55338 -12.20222 -11.90730 -11.85297 -11.76025 -11.56861 -11.19748 -11.05638 -10.78076 -10.68247 -10.53875 -10.32654 -10.03447 -9.92319 -9.34835 -9.04392 -8.84548 -8.70739 -7.17972 -6.40528 -6.32124 -4.48379 1.87455 2.11869 2.42202 3.12177 3.15869 3.21199 3.25024 4.17806 4.28110 4.77031 5.17101 5.26963 5.38707 5.58179 5.66164 5.70922 5.80210 5.91693 5.96084 5.99728 6.01117 6.18303 6.23489 6.31134 6.40084 6.46132 6.59056 6.65133 6.74396 6.81018 6.97646 7.09833 7.17784 7.49135 7.58827 7.69988 8.34108 8.57571 8.64929 9.21289 10.68162 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.009078 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.726011 B = 3083.637945 C = 4401.466752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.056 4.056 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.084 4.084 6 C -0.172 4.172 7 C -0.070 4.070 8 C -0.137 4.137 9 C 0.173 3.827 10 N -0.636 5.636 11 C 0.220 3.780 12 H 0.029 0.971 13 C -0.514 4.514 14 H 0.070 0.930 15 C 0.069 3.931 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.078 4.078 22 S -0.185 6.185 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.398 0.602 34 H 0.272 0.728 35 H 0.104 0.896 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 5.535 5.526 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.075 4.075 3 C -0.194 4.194 4 C -0.140 4.140 5 C -0.105 4.105 6 C -0.194 4.194 7 C -0.094 4.094 8 C -0.253 4.253 9 C 0.062 3.938 10 N -0.267 5.267 11 C 0.114 3.886 12 H 0.047 0.953 13 C -0.555 4.555 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.536 5.536 17 Si 0.734 3.266 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.227 4.227 22 S 0.057 5.943 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.237 0.763 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.960 4.722 6.158 7.820 hybrid contribution -0.924 0.546 -1.814 2.107 sum 0.036 5.268 4.345 6.828 Atomic orbital electron populations 1.21781 0.94728 1.02266 1.00595 1.20021 0.95639 0.95417 0.96465 1.21809 1.01054 0.95561 1.00978 1.19700 1.02834 0.96404 0.95041 1.20581 0.99166 0.98982 0.91771 1.20604 1.04108 0.96860 0.97807 1.20518 0.98705 0.95378 0.94827 1.20828 1.10101 0.99498 0.94886 1.18721 0.91771 0.93852 0.89476 1.55843 1.49893 1.16739 1.04217 1.19185 0.91039 0.82293 0.96107 0.95299 1.21061 1.03685 1.39719 0.90996 0.91184 1.25089 0.94471 0.93984 0.99914 1.69607 1.06733 1.41285 1.36017 0.86391 0.77747 0.79063 0.83381 1.19890 1.20966 1.19866 1.24077 1.03238 1.05088 0.90290 1.84935 1.71851 1.22373 1.15173 0.93334 0.93004 0.92117 0.89389 0.92797 0.92955 0.92980 0.86926 0.86786 0.86692 0.76310 0.91788 0.87808 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.06 37.16 0.34 -1.88 16 2 C -0.06 -1.00 2.76 -91.77 -0.25 -1.25 16 3 C -0.14 -2.01 8.93 37.16 0.33 -1.68 16 4 C -0.13 -2.58 4.83 -104.19 -0.50 -3.08 16 5 C -0.08 -1.42 8.70 -39.72 -0.35 -1.76 16 6 C -0.17 -2.81 10.06 -39.64 -0.40 -3.21 16 7 C -0.07 -1.27 9.68 -39.34 -0.38 -1.65 16 8 C -0.14 -2.86 6.05 -39.01 -0.24 -3.10 16 9 C 0.17 3.80 6.30 -83.71 -0.53 3.27 16 10 N -0.64 -15.07 5.69 -53.37 -0.30 -15.38 16 11 C 0.22 5.37 2.32 -69.17 -0.16 5.21 16 12 H 0.03 0.80 8.06 -51.93 -0.42 0.38 16 13 C -0.51 -13.13 8.76 -34.44 -0.30 -13.43 16 14 H 0.07 1.73 7.75 -52.49 -0.41 1.33 16 15 C 0.07 1.74 5.28 -17.82 -0.09 1.65 16 16 N -0.90 -23.21 11.50 55.43 0.64 -22.57 16 17 Si 0.91 19.78 29.54 -169.99 -5.02 14.76 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 C -0.08 -1.66 6.01 37.53 0.23 -1.44 16 22 S -0.18 -3.73 22.13 -107.50 -2.38 -6.11 16 23 H 0.05 0.69 7.74 -51.93 -0.40 0.29 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.09 1.81 5.55 -51.93 -0.29 1.52 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.68 7.02 -51.93 -0.36 0.32 16 30 H 0.11 1.60 7.02 -52.49 -0.37 1.23 16 31 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.40 9.68 3.57 -39.29 -0.14 9.54 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.10 2.04 8.13 -51.93 -0.42 1.62 16 36 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 LS Contribution 298.86 15.07 4.50 4.50 Total: -1.00 -26.04 298.86 -9.77 -35.81 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -4.90 Total: 11.34 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -2.31 Total: -22.35 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.33 Total: -37.95 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -2.38 Total: -6.11 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.04 -9.77 -35.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214182373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.666 kcal (2) G-P(sol) polarization free energy of solvation -26.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds