Wall clock time and date at job start Mon Mar 30 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47220 * 2 1 4 4 C 1.50702 * 109.46709 * 120.00115 * 2 1 3 5 5 C 1.37863 * 119.58086 * 293.64109 * 4 2 1 6 6 C 1.38240 * 120.21107 * 180.27942 * 5 4 2 7 7 C 1.38089 * 119.64161 * 359.51060 * 6 5 4 8 8 C 1.39040 * 120.46763 * 359.87097 * 7 6 5 9 9 C 1.38980 * 120.24081 * 0.99446 * 8 7 6 10 10 N 1.39124 * 124.82761 * 178.02401 * 9 8 7 11 11 C 1.45628 * 116.45973 * 26.37040 * 10 9 8 12 12 H 1.09002 * 109.53350 * 56.95665 * 11 10 9 13 13 C 1.50704 * 109.53727 * 177.10648 * 11 10 9 14 14 H 1.08001 * 120.00042 * 119.99847 * 13 11 10 15 15 C 1.37872 * 119.99807 * 300.00791 * 13 11 10 16 16 N 1.31519 * 120.00377 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00003 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46861 * 59.99420 * 17 15 13 19 19 H 1.48493 * 109.47330 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46948 * 299.99702 * 17 15 13 21 21 C 1.53724 * 109.09166 * 297.06880 * 11 10 9 22 22 S 1.76615 * 118.32039 * 181.77055 * 8 7 6 23 23 H 1.08993 * 109.47091 * 300.00429 * 1 2 3 24 24 H 1.09001 * 109.46632 * 59.99911 * 1 2 3 25 25 H 1.09001 * 109.47084 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46890 * 239.99871 * 2 1 3 27 27 H 1.09001 * 109.46759 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46963 * 299.99947 * 3 2 1 29 29 H 1.09001 * 109.46845 * 59.99834 * 3 2 1 30 30 H 1.07994 * 119.89846 * 0.31012 * 5 4 2 31 31 H 1.07999 * 120.18043 * 179.49524 * 6 5 4 32 32 H 1.08008 * 119.76788 * 179.59489 * 7 6 5 33 33 H 1.00898 * 111.00020 * 154.67713 * 10 9 8 34 34 H 0.97000 * 119.99738 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.97765 * 189.84441 * 21 11 10 36 36 H 1.08992 * 109.98092 * 311.18731 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.8058 -0.1603 2.4741 6 6 2.2658 -0.7980 3.6111 7 6 2.9448 -1.9948 3.4955 8 6 3.1658 -2.5621 2.2455 9 6 2.7223 -1.9184 1.0964 10 7 2.9254 -2.3786 -0.2007 11 6 3.0952 -3.8161 -0.3601 12 1 2.2284 -4.3333 0.0514 13 6 3.2321 -4.1482 -1.8237 14 1 4.1272 -4.6317 -2.1863 15 6 2.2147 -3.8347 -2.6998 16 7 1.1246 -3.2462 -2.2582 17 14 2.3847 -4.2457 -4.5141 18 1 2.5581 -5.7117 -4.6754 19 1 1.1630 -3.8097 -5.2370 20 1 3.5679 -3.5430 -5.0721 21 6 4.3619 -4.2590 0.3898 22 16 3.9987 -4.1175 2.1667 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.2669 0.7716 2.5604 31 1 2.0952 -0.3624 4.5846 32 1 3.3108 -2.4915 4.3821 33 1 2.2145 -2.0270 -0.8245 34 1 0.4090 -3.0253 -2.8747 35 1 4.6005 -5.2927 0.1396 36 1 5.1965 -3.6089 0.1274 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214182373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:50 Heat of formation + Delta-G solvation = -1.743998 kcal Electronic energy + Delta-G solvation = -18177.329174 eV Core-core repulsion = 15557.925697 eV Total energy + Delta-G solvation = -2619.403477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90108 -37.66772 -36.22806 -34.39084 -32.05200 -30.77290 -28.97904 -27.94630 -27.40900 -24.53389 -23.57894 -21.75214 -20.85166 -18.92183 -18.15772 -17.58702 -16.94440 -16.54027 -16.01962 -15.62337 -15.03745 -14.80001 -14.66374 -14.33058 -14.14519 -13.75608 -13.53459 -13.39186 -12.98785 -12.97297 -12.89665 -12.76356 -12.31561 -12.22722 -12.05422 -11.98869 -11.52023 -11.39783 -10.96199 -10.83568 -10.62283 -10.30036 -8.73818 -8.32293 -7.95756 -6.48758 0.42446 0.63904 0.82689 1.40122 1.41976 1.48489 1.53160 2.34461 2.78161 2.96237 3.59744 3.81210 4.01381 4.11250 4.25722 4.31029 4.36371 4.37995 4.48905 4.58646 4.61940 4.83255 4.85519 4.98475 5.00134 5.13804 5.16203 5.20664 5.26793 5.41903 5.45420 5.59641 5.61547 5.74892 5.79690 6.12785 6.49343 6.71692 6.88232 7.24090 8.74796 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.009078 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.726011 B = 3083.637945 C = 4401.466752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.129 4.129 4 C -0.141 4.141 5 C -0.081 4.081 6 C -0.154 4.154 7 C -0.079 4.079 8 C -0.163 4.163 9 C 0.129 3.871 10 N -0.648 5.648 11 C 0.225 3.775 12 H -0.016 1.016 13 C -0.538 4.538 14 H 0.071 0.929 15 C 0.026 3.974 16 N -0.918 5.918 17 Si 0.970 3.030 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.270 1.270 21 C -0.075 4.075 22 S -0.172 6.172 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.158 0.842 32 H 0.135 0.865 33 H 0.390 0.610 34 H 0.273 0.727 35 H 0.114 0.886 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 7.389 6.762 10.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.077 4.077 3 C -0.186 4.186 4 C -0.147 4.147 5 C -0.101 4.101 6 C -0.175 4.175 7 C -0.103 4.103 8 C -0.279 4.279 9 C 0.020 3.980 10 N -0.279 5.279 11 C 0.118 3.882 12 H 0.002 0.998 13 C -0.578 4.578 14 H 0.089 0.911 15 C -0.175 4.175 16 N -0.557 5.557 17 Si 0.794 3.206 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.195 1.195 21 C -0.224 4.224 22 S 0.069 5.931 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.227 0.773 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.612 6.586 7.432 9.949 hybrid contribution -0.880 0.031 -2.056 2.237 sum -0.268 6.617 5.376 8.530 Atomic orbital electron populations 1.21716 0.93634 1.00708 1.02539 1.20017 0.96473 0.96778 0.94401 1.21755 1.00381 0.93543 1.02929 1.20017 1.02175 0.95638 0.96839 1.21001 0.98496 0.99983 0.90664 1.21134 1.01301 0.95431 0.99585 1.20868 0.98895 0.96297 0.94228 1.21182 1.10968 0.99829 0.95932 1.19035 0.94334 0.95625 0.89016 1.55867 1.50677 1.15809 1.05538 1.18916 0.90580 0.82978 0.95767 0.99825 1.21355 1.04057 1.40359 0.92014 0.91055 1.25841 0.94122 0.93748 1.03769 1.69733 1.07162 1.41619 1.37137 0.85419 0.77707 0.78879 0.78549 1.19419 1.20570 1.19521 1.23925 1.01640 1.05463 0.91342 1.84695 1.71942 1.23034 1.13436 0.90677 0.91702 0.95366 0.93193 0.93816 0.91558 0.90445 0.83311 0.82473 0.84727 0.77301 0.91796 0.86827 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.06 71.98 0.65 -3.39 16 2 C -0.06 -2.01 2.76 -11.54 -0.03 -2.04 16 3 C -0.13 -3.51 8.93 71.98 0.64 -2.86 16 4 C -0.14 -5.33 4.83 -19.59 -0.09 -5.42 16 5 C -0.08 -2.44 8.70 22.18 0.19 -2.25 16 6 C -0.15 -4.38 10.06 22.23 0.22 -4.16 16 7 C -0.08 -2.70 9.68 22.43 0.22 -2.48 16 8 C -0.16 -6.82 6.05 22.64 0.14 -6.68 16 9 C 0.13 5.79 6.30 38.53 0.24 6.03 16 10 N -0.65 -32.24 5.69 -322.78 -1.84 -34.08 16 11 C 0.22 11.57 2.32 44.65 0.10 11.67 16 12 H -0.02 -0.92 8.06 -2.39 -0.02 -0.94 16 13 C -0.54 -28.62 8.76 25.60 0.22 -28.39 16 14 H 0.07 3.65 7.75 -2.91 -0.02 3.63 16 15 C 0.03 1.37 5.28 84.65 0.45 1.81 16 16 N -0.92 -49.38 11.50 21.45 0.25 -49.13 16 17 Si 0.97 41.30 29.54 68.60 2.03 43.33 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 C -0.08 -3.32 6.01 72.23 0.43 -2.88 16 22 S -0.17 -7.06 22.13 -56.49 -1.25 -8.31 16 23 H 0.07 1.92 7.74 -2.39 -0.02 1.90 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 2.15 5.55 -2.39 -0.01 2.13 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.70 7.02 -2.39 -0.02 1.68 16 30 H 0.15 3.39 7.02 -2.91 -0.02 3.37 16 31 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 33 H 0.39 20.05 3.57 -89.70 -0.32 19.73 16 34 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.11 4.64 8.13 -2.39 -0.02 4.62 16 36 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -58.99 298.86 3.33 -55.66 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.76 Total: 33.58 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 3.39 Total: -41.05 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -1.59 Total: -83.21 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: -7.06 SS G_CDS: -1.25 Total: -8.31 kcal Total: -58.99 3.33 -55.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214182373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.917 kcal (2) G-P(sol) polarization free energy of solvation -58.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds