Wall clock time and date at job start Mon Mar 30 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37863 * 119.57615 * 2 1 4 4 C 1.38237 * 120.22006 * 180.02562 * 3 2 1 5 5 C 1.38092 * 119.62734 * 0.30577 * 4 3 2 6 6 C 1.50705 * 119.75916 * 179.87385 * 5 4 3 7 7 C 1.39042 * 120.47247 * 359.88251 * 5 4 3 8 8 C 1.38966 * 120.25977 * 359.56613 * 7 5 4 9 9 N 1.39115 * 124.90861 * 181.29087 * 8 7 5 10 10 C 1.45581 * 116.64561 * 335.02181 * 9 8 7 11 11 H 1.08999 * 109.44894 * 302.46872 * 10 9 8 12 12 C 1.53003 * 109.60184 * 182.25129 * 10 9 8 13 13 C 1.50695 * 109.47543 * 65.32442 * 12 10 9 14 14 H 1.08009 * 119.99555 * 0.02562 * 13 12 10 15 15 C 1.37875 * 120.00487 * 179.97438 * 13 12 10 16 16 N 1.31519 * 119.99533 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00417 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47271 * 59.99748 * 17 15 13 19 19 H 1.48502 * 109.47251 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47069 * 300.00060 * 17 15 13 21 21 C 1.53747 * 109.11092 * 62.31329 * 10 9 8 22 22 S 1.76638 * 118.30354 * 179.52421 * 7 5 4 23 23 H 1.09001 * 109.47124 * 269.98126 * 1 2 3 24 24 H 1.09004 * 109.47190 * 29.97915 * 1 2 3 25 25 H 1.08997 * 109.46602 * 149.98159 * 1 2 3 26 26 H 1.08008 * 119.88889 * 0.04933 * 3 2 1 27 27 H 1.07995 * 120.18596 * 180.28256 * 4 3 2 28 28 H 1.09001 * 109.46943 * 270.00627 * 6 5 4 29 29 H 1.08997 * 109.47081 * 30.01228 * 6 5 4 30 30 H 1.09004 * 109.46848 * 150.00786 * 6 5 4 31 31 H 1.00899 * 111.00199 * 103.35991 * 9 8 7 32 32 H 1.09002 * 109.46812 * 185.32784 * 12 10 9 33 33 H 1.08997 * 109.46869 * 305.31960 * 12 10 9 34 34 H 0.96996 * 119.99639 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.99496 * 170.07187 * 21 10 9 36 36 H 1.08998 * 109.98773 * 48.79302 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.1990 0.0000 4 6 3.5697 1.2145 -0.0005 5 6 4.2659 0.0219 -0.0075 6 6 5.7728 0.0354 -0.0110 7 6 3.5863 -1.1911 -0.0115 8 6 2.1969 -1.2155 0.0006 9 7 1.4212 -2.3701 0.0237 10 6 2.0315 -3.5776 -0.5137 11 1 2.3334 -3.4030 -1.5464 12 6 1.0248 -4.7286 -0.4611 13 6 -0.1283 -4.4302 -1.3842 14 1 -0.1417 -3.5115 -1.9520 15 6 -1.1658 -5.3303 -1.5047 16 7 -1.1487 -6.4496 -0.8144 17 14 -2.5956 -4.9600 -2.6484 18 1 -2.0917 -4.8053 -4.0367 19 1 -3.5725 -6.0773 -2.5973 20 1 -3.2594 -3.7027 -2.2198 21 6 3.2663 -3.9356 0.3294 22 16 4.5338 -2.6818 -0.0332 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3632 -0.8898 -0.5141 26 1 1.6387 2.1293 0.0008 27 1 4.1022 2.1541 0.0041 28 1 6.1337 0.0433 -1.0395 29 1 6.1294 0.9262 0.5062 30 1 6.1453 -0.8537 0.4980 31 1 1.0466 -2.5357 0.9458 32 1 1.5119 -5.6519 -0.7749 33 1 0.6548 -4.8413 0.5579 34 1 -1.8788 -7.0826 -0.8988 35 1 3.6314 -4.9250 0.0541 36 1 3.0129 -3.9137 1.3892 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214184512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:20 Heat of formation + Delta-G solvation = 9.957300 kcal Electronic energy + Delta-G solvation = -17642.514039 eV Core-core repulsion = 15023.617968 eV Total energy + Delta-G solvation = -2618.896071 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.64132 -36.84546 -33.73030 -32.80692 -31.11157 -29.06776 -28.23376 -27.51839 -24.48605 -23.50279 -22.39802 -20.35549 -20.05324 -16.88932 -16.31647 -16.20373 -15.83316 -14.86643 -14.50223 -14.35670 -13.86540 -13.61967 -13.24963 -12.93474 -12.55717 -12.47045 -12.31314 -12.18094 -11.71916 -11.55463 -11.43633 -11.15493 -11.05853 -10.80666 -10.54055 -10.50549 -10.09758 -9.57210 -9.45022 -9.23419 -8.57154 -8.39048 -7.57385 -7.07060 -6.02124 -4.02222 1.46603 1.57793 1.89322 2.65515 3.34318 3.38421 3.41963 3.84146 4.33454 4.46160 4.94317 5.03889 5.23882 5.35038 5.37299 5.38876 5.44231 5.61920 5.68094 5.73267 5.79974 5.87511 6.02237 6.07436 6.17164 6.23086 6.43741 6.53858 6.61799 6.67429 6.84742 7.09013 7.36089 7.51309 7.72991 7.91155 7.97023 8.36942 9.03115 9.61148 11.09335 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.006245 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.774422 B = 4482.714587 C = 5381.020768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.087 4.087 3 C -0.109 4.109 4 C -0.133 4.133 5 C -0.060 4.060 6 C -0.114 4.114 7 C -0.123 4.123 8 C 0.132 3.868 9 N -0.623 5.623 10 C 0.104 3.896 11 H 0.086 0.914 12 C 0.035 3.965 13 C -0.501 4.501 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.277 1.277 21 C -0.138 4.138 22 S -0.143 6.143 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.360 0.640 32 H 0.029 0.971 33 H 0.020 0.980 34 H 0.260 0.740 35 H 0.114 0.886 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 12.231 3.661 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.153 4.153 5 C -0.066 4.066 6 C -0.172 4.172 7 C -0.239 4.239 8 C 0.027 3.973 9 N -0.251 5.251 10 C -0.007 4.007 11 H 0.104 0.896 12 C -0.004 4.004 13 C -0.540 4.540 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.721 3.279 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.202 1.202 21 C -0.288 4.288 22 S 0.101 5.899 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.190 0.810 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.132 0.868 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.106 11.818 2.967 15.830 hybrid contribution -1.633 0.095 0.237 1.653 sum 8.473 11.913 3.204 14.966 Atomic orbital electron populations 1.20726 0.90629 1.03557 1.01861 1.19928 0.96467 0.91183 1.01560 1.20808 0.94059 0.97056 1.01008 1.20744 0.94056 0.96616 1.03933 1.19388 0.95564 0.91157 1.00508 1.20792 0.91319 1.02677 1.02367 1.21507 0.95300 0.96463 1.10656 1.18384 0.88599 0.91482 0.98860 1.55383 1.37973 1.02850 1.28921 1.21994 0.91786 0.90247 0.96630 0.89554 1.19188 0.92596 0.90554 0.98039 1.21056 1.04030 1.04510 1.24405 0.92026 1.24992 0.98384 0.95099 0.96065 1.69944 1.32769 1.09621 1.41674 0.86636 0.82168 0.77700 0.81362 1.20361 1.21508 1.20235 1.24845 0.99459 1.00313 1.04143 1.85230 1.16740 0.98382 1.89587 0.92014 0.92538 0.89130 0.86242 0.86182 0.91198 0.91588 0.90883 0.81009 0.95295 0.96175 0.93012 0.86788 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.65 36.01 0.35 -1.28 16 2 C -0.09 -1.38 5.91 -104.19 -0.62 -1.99 16 3 C -0.11 -1.48 9.64 -39.72 -0.38 -1.86 16 4 C -0.13 -1.76 9.70 -39.64 -0.38 -2.14 16 5 C -0.06 -0.88 5.90 -104.37 -0.62 -1.50 16 6 C -0.11 -1.36 9.49 36.01 0.34 -1.02 16 7 C -0.12 -2.06 6.05 -39.01 -0.24 -2.30 16 8 C 0.13 2.30 6.16 -83.71 -0.52 1.78 16 9 N -0.62 -11.60 4.15 -52.27 -0.22 -11.82 16 10 C 0.10 2.05 2.29 -68.04 -0.16 1.89 16 11 H 0.09 1.86 8.05 -51.93 -0.42 1.44 16 12 C 0.03 0.83 4.56 -27.88 -0.13 0.70 16 13 C -0.50 -13.44 8.85 -34.44 -0.30 -13.75 16 14 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 15 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.14 -2.31 6.05 37.55 0.23 -2.09 16 22 S -0.14 -2.31 20.15 -107.50 -2.17 -4.47 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 25 H 0.09 1.57 7.27 -51.93 -0.38 1.19 16 26 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.07 0.91 6.63 -51.93 -0.34 0.56 16 31 H 0.36 6.46 8.69 -39.29 -0.34 6.12 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.11 1.83 8.13 -51.93 -0.42 1.41 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 305.94 15.07 4.61 4.61 Total: -1.00 -28.60 305.94 -9.82 -38.42 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.24 Total: 4.32 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.52 Total: -22.11 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.52 Total: -37.18 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.17 Total: -4.47 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.60 -9.82 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214184512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.377 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds