Wall clock time and date at job start Mon Mar 30 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37863 * 119.57615 * 2 1 4 4 C 1.38237 * 120.22006 * 180.02562 * 3 2 1 5 5 C 1.38092 * 119.62734 * 0.30577 * 4 3 2 6 6 C 1.50705 * 119.75916 * 179.87385 * 5 4 3 7 7 C 1.39042 * 120.47247 * 359.88251 * 5 4 3 8 8 C 1.38966 * 120.25977 * 359.56613 * 7 5 4 9 9 N 1.39115 * 124.90861 * 181.29087 * 8 7 5 10 10 C 1.45581 * 116.64561 * 335.02181 * 9 8 7 11 11 H 1.08999 * 109.44894 * 302.46872 * 10 9 8 12 12 C 1.53003 * 109.60184 * 182.25129 * 10 9 8 13 13 C 1.50695 * 109.47543 * 65.32442 * 12 10 9 14 14 H 1.08009 * 119.99555 * 0.02562 * 13 12 10 15 15 C 1.37875 * 120.00487 * 179.97438 * 13 12 10 16 16 N 1.31519 * 119.99533 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00417 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47271 * 59.99748 * 17 15 13 19 19 H 1.48502 * 109.47251 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47069 * 300.00060 * 17 15 13 21 21 C 1.53747 * 109.11092 * 62.31329 * 10 9 8 22 22 S 1.76638 * 118.30354 * 179.52421 * 7 5 4 23 23 H 1.09001 * 109.47124 * 269.98126 * 1 2 3 24 24 H 1.09004 * 109.47190 * 29.97915 * 1 2 3 25 25 H 1.08997 * 109.46602 * 149.98159 * 1 2 3 26 26 H 1.08008 * 119.88889 * 0.04933 * 3 2 1 27 27 H 1.07995 * 120.18596 * 180.28256 * 4 3 2 28 28 H 1.09001 * 109.46943 * 270.00627 * 6 5 4 29 29 H 1.08997 * 109.47081 * 30.01228 * 6 5 4 30 30 H 1.09004 * 109.46848 * 150.00786 * 6 5 4 31 31 H 1.00899 * 111.00199 * 103.35991 * 9 8 7 32 32 H 1.09002 * 109.46812 * 185.32784 * 12 10 9 33 33 H 1.08997 * 109.46869 * 305.31960 * 12 10 9 34 34 H 0.96996 * 119.99639 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.99496 * 170.07187 * 21 10 9 36 36 H 1.08998 * 109.98773 * 48.79302 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.1990 0.0000 4 6 3.5697 1.2145 -0.0005 5 6 4.2659 0.0219 -0.0075 6 6 5.7728 0.0354 -0.0110 7 6 3.5863 -1.1911 -0.0115 8 6 2.1969 -1.2155 0.0006 9 7 1.4212 -2.3701 0.0237 10 6 2.0315 -3.5776 -0.5137 11 1 2.3334 -3.4030 -1.5464 12 6 1.0248 -4.7286 -0.4611 13 6 -0.1283 -4.4302 -1.3842 14 1 -0.1417 -3.5115 -1.9520 15 6 -1.1658 -5.3303 -1.5047 16 7 -1.1487 -6.4496 -0.8144 17 14 -2.5956 -4.9600 -2.6484 18 1 -2.0917 -4.8053 -4.0367 19 1 -3.5725 -6.0773 -2.5973 20 1 -3.2594 -3.7027 -2.2198 21 6 3.2663 -3.9356 0.3294 22 16 4.5338 -2.6818 -0.0332 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3632 -0.8898 -0.5141 26 1 1.6387 2.1293 0.0008 27 1 4.1022 2.1541 0.0041 28 1 6.1337 0.0433 -1.0395 29 1 6.1294 0.9262 0.5062 30 1 6.1453 -0.8537 0.4980 31 1 1.0466 -2.5357 0.9458 32 1 1.5119 -5.6519 -0.7749 33 1 0.6548 -4.8413 0.5579 34 1 -1.8788 -7.0826 -0.8988 35 1 3.6314 -4.9250 0.0541 36 1 3.0129 -3.9137 1.3892 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214184512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:20 Heat of formation + Delta-G solvation = -4.595033 kcal Electronic energy + Delta-G solvation = -17643.145075 eV Core-core repulsion = 15023.617968 eV Total energy + Delta-G solvation = -2619.527107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86184 -38.26595 -35.18206 -34.49568 -32.59492 -30.20463 -29.52276 -29.28930 -25.61640 -25.30597 -23.72602 -21.68982 -21.50161 -18.58771 -17.94383 -17.46477 -17.16881 -16.44780 -16.04007 -15.82150 -15.05305 -14.89847 -14.45443 -14.28056 -14.01937 -13.98576 -13.59481 -13.39722 -13.29721 -12.88031 -12.76039 -12.72158 -12.52183 -12.31891 -12.26099 -12.13196 -11.54949 -11.31676 -11.10475 -10.71133 -10.54234 -9.88399 -8.82966 -8.33475 -8.15515 -6.21970 0.30827 0.42480 0.61255 1.34475 1.41924 1.43124 1.51184 2.44086 2.71002 2.93505 3.20611 3.67240 3.89920 3.97288 4.06620 4.24643 4.34527 4.39500 4.53606 4.64709 4.72696 4.79431 4.79917 4.86848 4.88766 4.91948 5.20406 5.32482 5.38782 5.45148 5.52181 5.58281 5.68641 5.80883 6.01017 6.18152 6.30377 6.55404 6.89541 7.44865 8.95455 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.006245 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.774422 B = 4482.714587 C = 5381.020768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.102 4.102 3 C -0.103 4.103 4 C -0.125 4.125 5 C -0.069 4.069 6 C -0.112 4.112 7 C -0.148 4.148 8 C 0.103 3.897 9 N -0.631 5.631 10 C 0.120 3.880 11 H 0.065 0.935 12 C 0.044 3.956 13 C -0.510 4.510 14 H 0.055 0.945 15 C 0.004 3.996 16 N -0.934 5.934 17 Si 0.955 3.045 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.270 1.270 21 C -0.136 4.136 22 S -0.127 6.127 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.151 0.849 27 H 0.157 0.843 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.358 0.642 32 H 0.008 0.992 33 H 0.004 0.996 34 H 0.261 0.739 35 H 0.118 0.882 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 14.960 3.534 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.106 4.106 3 C -0.124 4.124 4 C -0.145 4.145 5 C -0.074 4.074 6 C -0.169 4.169 7 C -0.264 4.264 8 C -0.001 4.001 9 N -0.260 5.260 10 C 0.009 3.991 11 H 0.083 0.917 12 C 0.005 3.995 13 C -0.548 4.548 14 H 0.073 0.927 15 C -0.193 4.193 16 N -0.575 5.575 17 Si 0.781 3.219 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.286 4.286 22 S 0.116 5.884 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.169 0.831 27 H 0.175 0.825 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.187 0.813 32 H 0.027 0.973 33 H 0.022 0.978 34 H 0.070 0.930 35 H 0.136 0.864 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.800 14.569 2.835 18.355 hybrid contribution -1.782 -0.641 0.292 1.916 sum 9.017 13.928 3.126 16.884 Atomic orbital electron populations 1.20657 0.90324 1.02912 1.02288 1.20152 0.96956 0.91469 1.02046 1.21185 0.94627 0.97290 0.99278 1.21200 0.94039 0.97506 1.01713 1.19815 0.97097 0.90829 0.99697 1.20835 0.89428 1.03631 1.03026 1.21767 0.95254 0.97412 1.11938 1.18558 0.89176 0.91352 1.01030 1.55277 1.38827 1.02858 1.29011 1.21494 0.91761 0.89570 0.96245 0.91701 1.18981 0.92799 0.91449 0.96286 1.21335 1.04955 1.04047 1.24472 0.92705 1.25774 1.01004 0.94964 0.97587 1.70057 1.33665 1.10541 1.43203 0.85645 0.79089 0.77707 0.79437 1.19886 1.21090 1.19491 1.24671 0.98837 1.01234 1.03841 1.85081 1.15599 0.97878 1.89833 0.91077 0.90417 0.92405 0.83131 0.82539 0.90578 0.88832 0.91714 0.81290 0.97337 0.97756 0.92996 0.86379 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.98 9.65 71.24 0.69 -2.29 16 2 C -0.10 -3.09 5.91 -19.58 -0.12 -3.20 16 3 C -0.10 -2.47 9.64 22.18 0.21 -2.26 16 4 C -0.12 -2.79 9.70 22.23 0.22 -2.58 16 5 C -0.07 -1.82 5.90 -19.70 -0.12 -1.94 16 6 C -0.11 -2.33 9.49 71.24 0.68 -1.65 16 7 C -0.15 -4.82 6.05 22.64 0.14 -4.68 16 8 C 0.10 3.58 6.16 38.53 0.24 3.81 16 9 N -0.63 -24.26 4.15 -319.27 -1.32 -25.59 16 10 C 0.12 4.93 2.29 45.42 0.10 5.03 16 11 H 0.06 2.92 8.05 -2.39 -0.02 2.90 16 12 C 0.04 2.18 4.56 29.85 0.14 2.31 16 13 C -0.51 -28.16 8.85 25.60 0.23 -27.93 16 14 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 15 C 0.00 0.22 5.46 84.65 0.46 0.69 16 16 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 17 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C -0.14 -4.67 6.05 72.23 0.44 -4.24 16 22 S -0.13 -4.05 20.15 -56.49 -1.14 -5.19 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 24 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 25 H 0.06 2.03 7.27 -2.39 -0.02 2.01 16 26 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 27 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 30 H 0.06 1.46 6.63 -2.38 -0.02 1.44 16 31 H 0.36 13.43 8.69 -89.69 -0.78 12.65 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.00 0.22 8.13 -2.39 -0.02 0.20 16 34 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.12 3.90 8.13 -2.39 -0.02 3.88 16 36 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -62.34 305.94 3.44 -58.90 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.29 Total: 19.39 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 3.30 Total: -38.93 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -1.04 Total: -80.68 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -1.14 Total: -5.19 kcal Total: -62.34 3.44 -58.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214184512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.305 kcal (2) G-P(sol) polarization free energy of solvation -62.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds