Wall clock time and date at job start Mon Mar 30 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37867 * 119.58916 * 2 1 4 4 C 1.38239 * 120.21383 * 179.70085 * 3 2 1 5 5 C 1.38093 * 119.64781 * 0.12090 * 4 3 2 6 6 C 1.50701 * 119.77195 * 179.72592 * 5 4 3 7 7 C 1.39045 * 120.45945 * 359.69973 * 5 4 3 8 8 C 1.38974 * 120.23546 * 0.93466 * 7 5 4 9 9 N 1.39126 * 124.78639 * 177.26896 * 8 7 5 10 10 C 1.45639 * 116.41273 * 27.02932 * 9 8 7 11 11 H 1.09003 * 109.59871 * 56.79662 * 10 9 8 12 12 C 1.53007 * 109.53658 * 176.98325 * 10 9 8 13 13 C 1.50703 * 109.46896 * 294.61861 * 12 10 9 14 14 H 1.07996 * 120.00404 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99624 * 179.97438 * 13 12 10 16 16 N 1.31510 * 119.99875 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99872 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47121 * 90.00584 * 17 15 13 19 19 H 1.48510 * 109.46938 * 209.99857 * 17 15 13 20 20 H 1.48501 * 109.47326 * 329.99838 * 17 15 13 21 21 C 1.53720 * 109.09830 * 296.87133 * 10 9 8 22 22 S 1.76615 * 118.32924 * 181.72946 * 7 5 4 23 23 H 1.09002 * 109.47152 * 269.72769 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72869 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72850 * 1 2 3 26 26 H 1.07999 * 119.89478 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.17811 * 179.80235 * 4 3 2 28 28 H 1.08999 * 109.47394 * 269.97689 * 6 5 4 29 29 H 1.08999 * 109.47331 * 29.97414 * 6 5 4 30 30 H 1.08997 * 109.47091 * 149.97418 * 6 5 4 31 31 H 1.00896 * 111.00013 * 155.29422 * 9 8 7 32 32 H 1.09002 * 109.46280 * 54.61611 * 12 10 9 33 33 H 1.08995 * 109.47151 * 174.61738 * 12 10 9 34 34 H 0.96996 * 120.00009 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.96906 * 311.09345 * 21 10 9 36 36 H 1.08998 * 109.97460 * 189.76996 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1989 0.0000 4 6 3.5701 1.2140 0.0062 5 6 4.2662 0.0213 0.0099 6 6 5.7732 0.0345 0.0105 7 6 3.5864 -1.1916 0.0137 8 6 2.1970 -1.2152 -0.0058 9 7 1.4235 -2.3704 -0.0584 10 6 2.0209 -3.5761 0.4987 11 1 2.2998 -3.3995 1.5375 12 6 1.0138 -4.7259 0.4278 13 6 -0.1591 -4.4221 1.3239 14 1 -0.1837 -3.5014 1.8879 15 6 -1.2010 -5.3198 1.4238 16 7 -2.2248 -5.0545 2.2054 17 14 -1.1587 -6.9119 0.4478 18 1 -0.4980 -7.9695 1.2541 19 1 -2.5462 -7.3309 0.1238 20 1 -0.3987 -6.7012 -0.8105 21 6 3.2734 -3.9390 -0.3152 22 16 4.5322 -2.6823 0.0653 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8876 -0.5180 25 1 -0.3633 0.8924 -0.5096 26 1 1.6394 2.1293 -0.0004 27 1 4.1028 2.1534 0.0030 28 1 6.1369 0.0343 -1.0170 29 1 6.1286 0.9293 0.5215 30 1 6.1440 -0.8505 0.5274 31 1 0.5060 -2.2091 0.3292 32 1 0.6664 -4.8416 -0.5988 33 1 1.4923 -5.6486 0.7558 34 1 -2.9579 -5.6858 2.2753 35 1 3.0425 -3.9242 -1.3804 36 1 3.6330 -4.9262 -0.0249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214184585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:22 Heat of formation + Delta-G solvation = 10.311103 kcal Electronic energy + Delta-G solvation = -17676.045138 eV Core-core repulsion = 15057.164409 eV Total energy + Delta-G solvation = -2618.880729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71961 -36.89955 -33.84499 -32.80327 -31.33386 -29.29033 -28.38913 -28.06707 -24.57120 -23.44216 -22.28335 -20.36780 -19.66187 -17.19741 -16.63775 -16.34739 -16.01856 -15.11076 -14.39836 -14.26900 -13.99806 -13.37701 -13.15866 -12.98674 -12.82866 -12.52872 -12.50129 -12.06497 -11.86570 -11.79733 -11.74720 -11.46930 -11.18178 -11.00579 -10.61675 -10.36361 -10.06037 -9.79592 -9.42526 -9.34757 -9.03234 -8.69796 -7.54667 -6.82728 -6.20400 -4.21435 1.48394 1.68181 1.95400 2.68768 3.21234 3.30000 3.32321 3.84696 4.30828 4.33888 4.94759 5.05350 5.12042 5.15832 5.36166 5.41554 5.44527 5.57818 5.65784 5.70160 5.71877 5.84557 5.94180 5.99593 6.14106 6.17561 6.24775 6.36077 6.46005 6.63632 6.79681 6.90692 7.04339 7.14151 7.54464 7.66325 7.75136 8.29842 8.77942 9.40276 10.91984 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.006296 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.319332 B = 4446.311935 C = 5327.563364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.139 4.139 3 C -0.086 4.086 4 C -0.156 4.156 5 C -0.043 4.043 6 C -0.111 4.111 7 C -0.132 4.132 8 C 0.160 3.840 9 N -0.635 5.635 10 C 0.108 3.892 11 H 0.061 0.939 12 C -0.007 4.007 13 C -0.531 4.531 14 H 0.070 0.930 15 C 0.074 3.926 16 N -0.895 5.895 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.264 1.264 21 C -0.102 4.102 22 S -0.146 6.146 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.390 0.610 32 H 0.031 0.969 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.094 0.906 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.004 9.063 -5.138 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.144 4.144 3 C -0.107 4.107 4 C -0.178 4.178 5 C -0.048 4.048 6 C -0.168 4.168 7 C -0.248 4.248 8 C 0.051 3.949 9 N -0.263 5.263 10 C -0.001 4.001 11 H 0.079 0.921 12 C -0.046 4.046 13 C -0.569 4.569 14 H 0.088 0.912 15 C -0.129 4.129 16 N -0.533 5.533 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.250 4.250 22 S 0.096 5.904 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.223 0.777 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.159 8.418 -5.411 15.747 hybrid contribution -1.651 -0.517 -0.009 1.730 sum 10.508 7.901 -5.420 14.220 Atomic orbital electron populations 1.20752 0.90996 1.03079 1.02553 1.19811 0.96035 0.91724 1.06827 1.20705 0.94066 0.96719 0.99176 1.20643 0.93951 0.96592 1.06570 1.19371 0.95496 0.91066 0.98902 1.20755 0.91255 1.02422 1.02401 1.20786 0.93440 0.96419 1.14153 1.18400 0.90572 0.90261 0.95623 1.55193 1.08839 1.02077 1.60172 1.21530 0.93476 0.90091 0.94977 0.92149 1.19715 0.94128 0.92285 0.98504 1.20943 1.02376 1.07038 1.26554 0.91157 1.24969 0.95025 0.98174 0.94712 1.69896 1.08793 1.36703 1.37892 0.86774 0.77501 0.83819 0.81193 1.20170 1.21229 1.18864 1.24153 0.96726 0.99653 1.04469 1.85092 1.17259 0.98271 1.89737 0.91205 0.90670 0.91557 0.86286 0.86233 0.90985 0.91518 0.91204 0.77711 0.95098 0.95522 0.92470 0.88755 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.10 36.01 0.33 -1.39 16 2 C -0.14 -2.24 5.91 -104.19 -0.62 -2.86 16 3 C -0.09 -1.21 9.64 -39.72 -0.38 -1.59 16 4 C -0.16 -2.13 9.70 -39.63 -0.38 -2.51 16 5 C -0.04 -0.64 5.90 -104.38 -0.62 -1.25 16 6 C -0.11 -1.34 9.52 36.01 0.34 -0.99 16 7 C -0.13 -2.27 6.05 -39.01 -0.24 -2.51 16 8 C 0.16 2.90 6.30 -83.71 -0.53 2.37 16 9 N -0.64 -12.24 5.61 -52.24 -0.29 -12.53 16 10 C 0.11 2.12 2.37 -68.02 -0.16 1.96 16 11 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 12 C -0.01 -0.16 3.72 -27.88 -0.10 -0.26 16 13 C -0.53 -14.00 8.86 -34.44 -0.31 -14.30 16 14 H 0.07 1.99 7.48 -52.49 -0.39 1.60 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -26.19 13.96 55.43 0.77 -25.42 16 17 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 21 C -0.10 -1.71 6.06 37.53 0.23 -1.48 16 22 S -0.15 -2.37 20.13 -107.50 -2.16 -4.53 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 1.19 6.59 -51.93 -0.34 0.85 16 25 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 26 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.07 0.88 6.57 -51.93 -0.34 0.54 16 31 H 0.39 7.85 4.87 -39.29 -0.19 7.66 16 32 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 33 H 0.03 0.58 7.57 -51.93 -0.39 0.19 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.11 1.69 8.13 -51.93 -0.42 1.27 16 LS Contribution 297.99 15.07 4.49 4.49 Total: -1.00 -28.60 297.99 -9.39 -37.99 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.99 Total: 6.89 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -2.53 Total: -22.88 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.48 Total: -37.95 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.16 Total: -4.53 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.60 -9.39 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214184585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.301 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds