Wall clock time and date at job start Mon Mar 30 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37867 * 119.58916 * 2 1 4 4 C 1.38239 * 120.21383 * 179.70085 * 3 2 1 5 5 C 1.38093 * 119.64781 * 0.12090 * 4 3 2 6 6 C 1.50701 * 119.77195 * 179.72592 * 5 4 3 7 7 C 1.39045 * 120.45945 * 359.69973 * 5 4 3 8 8 C 1.38974 * 120.23546 * 0.93466 * 7 5 4 9 9 N 1.39126 * 124.78639 * 177.26896 * 8 7 5 10 10 C 1.45639 * 116.41273 * 27.02932 * 9 8 7 11 11 H 1.09003 * 109.59871 * 56.79662 * 10 9 8 12 12 C 1.53007 * 109.53658 * 176.98325 * 10 9 8 13 13 C 1.50703 * 109.46896 * 294.61861 * 12 10 9 14 14 H 1.07996 * 120.00404 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99624 * 179.97438 * 13 12 10 16 16 N 1.31510 * 119.99875 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99872 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47121 * 90.00584 * 17 15 13 19 19 H 1.48510 * 109.46938 * 209.99857 * 17 15 13 20 20 H 1.48501 * 109.47326 * 329.99838 * 17 15 13 21 21 C 1.53720 * 109.09830 * 296.87133 * 10 9 8 22 22 S 1.76615 * 118.32924 * 181.72946 * 7 5 4 23 23 H 1.09002 * 109.47152 * 269.72769 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72869 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72850 * 1 2 3 26 26 H 1.07999 * 119.89478 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.17811 * 179.80235 * 4 3 2 28 28 H 1.08999 * 109.47394 * 269.97689 * 6 5 4 29 29 H 1.08999 * 109.47331 * 29.97414 * 6 5 4 30 30 H 1.08997 * 109.47091 * 149.97418 * 6 5 4 31 31 H 1.00896 * 111.00013 * 155.29422 * 9 8 7 32 32 H 1.09002 * 109.46280 * 54.61611 * 12 10 9 33 33 H 1.08995 * 109.47151 * 174.61738 * 12 10 9 34 34 H 0.96996 * 120.00009 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.96906 * 311.09345 * 21 10 9 36 36 H 1.08998 * 109.97460 * 189.76996 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1989 0.0000 4 6 3.5701 1.2140 0.0062 5 6 4.2662 0.0213 0.0099 6 6 5.7732 0.0345 0.0105 7 6 3.5864 -1.1916 0.0137 8 6 2.1970 -1.2152 -0.0058 9 7 1.4235 -2.3704 -0.0584 10 6 2.0209 -3.5761 0.4987 11 1 2.2998 -3.3995 1.5375 12 6 1.0138 -4.7259 0.4278 13 6 -0.1591 -4.4221 1.3239 14 1 -0.1837 -3.5014 1.8879 15 6 -1.2010 -5.3198 1.4238 16 7 -2.2248 -5.0545 2.2054 17 14 -1.1587 -6.9119 0.4478 18 1 -0.4980 -7.9695 1.2541 19 1 -2.5462 -7.3309 0.1238 20 1 -0.3987 -6.7012 -0.8105 21 6 3.2734 -3.9390 -0.3152 22 16 4.5322 -2.6823 0.0653 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8876 -0.5180 25 1 -0.3633 0.8924 -0.5096 26 1 1.6394 2.1293 -0.0004 27 1 4.1028 2.1534 0.0030 28 1 6.1369 0.0343 -1.0170 29 1 6.1286 0.9293 0.5215 30 1 6.1440 -0.8505 0.5274 31 1 0.5060 -2.2091 0.3292 32 1 0.6664 -4.8416 -0.5988 33 1 1.4923 -5.6486 0.7558 34 1 -2.9579 -5.6858 2.2753 35 1 3.0425 -3.9242 -1.3804 36 1 3.6330 -4.9262 -0.0249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214184585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:22 Heat of formation + Delta-G solvation = -5.217889 kcal Electronic energy + Delta-G solvation = -17676.718526 eV Core-core repulsion = 15057.164409 eV Total energy + Delta-G solvation = -2619.554116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.96998 -38.30035 -35.26272 -34.54699 -32.82389 -30.53729 -29.68003 -29.66526 -25.70130 -25.11366 -23.68740 -21.65877 -21.14913 -19.14436 -17.90777 -17.76517 -17.35495 -16.62651 -16.03117 -15.56347 -15.22338 -14.73353 -14.63365 -14.30616 -14.14404 -14.05509 -13.72503 -13.55742 -13.45635 -13.00250 -12.83765 -12.80281 -12.68579 -12.42299 -12.16389 -11.83374 -11.75129 -11.59357 -10.98261 -10.81645 -10.78762 -10.33172 -8.78804 -8.32245 -8.12934 -6.37274 0.29900 0.46420 0.68715 1.35944 1.38003 1.39309 1.49168 2.33933 2.62719 2.93435 3.10316 3.66955 3.79263 4.00296 4.08117 4.15919 4.25418 4.33436 4.45847 4.57064 4.64840 4.70785 4.74124 4.75378 4.80811 4.84911 5.09475 5.14680 5.18629 5.30865 5.34332 5.51294 5.55087 5.64295 5.95014 6.13881 6.17676 6.37413 6.66862 7.27322 8.83668 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.006296 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.319332 B = 4446.311935 C = 5327.563364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.155 4.155 3 C -0.084 4.084 4 C -0.148 4.148 5 C -0.052 4.052 6 C -0.108 4.108 7 C -0.157 4.157 8 C 0.125 3.875 9 N -0.642 5.642 10 C 0.114 3.886 11 H 0.036 0.964 12 C -0.001 4.001 13 C -0.530 4.530 14 H 0.034 0.966 15 C 0.015 3.985 16 N -0.944 5.944 17 Si 0.947 3.053 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.246 1.246 21 C -0.100 4.100 22 S -0.129 6.129 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.377 0.623 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.267 0.733 35 H 0.096 0.904 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.975 9.952 -6.452 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.160 4.160 3 C -0.104 4.104 4 C -0.168 4.168 5 C -0.058 4.058 6 C -0.165 4.165 7 C -0.273 4.273 8 C 0.018 3.982 9 N -0.270 5.270 10 C 0.005 3.995 11 H 0.054 0.946 12 C -0.040 4.040 13 C -0.568 4.568 14 H 0.052 0.948 15 C -0.184 4.184 16 N -0.584 5.584 17 Si 0.770 3.230 18 H -0.191 1.191 19 H -0.213 1.213 20 H -0.170 1.170 21 C -0.248 4.248 22 S 0.113 5.887 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.112 0.888 26 H 0.168 0.832 27 H 0.174 0.826 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.208 0.792 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.170 9.331 -6.736 18.255 hybrid contribution -2.218 -0.588 0.467 2.342 sum 11.952 8.743 -6.270 16.081 Atomic orbital electron populations 1.20717 0.90653 1.03406 1.02150 1.20084 0.96607 0.92094 1.07171 1.21107 0.94712 0.96982 0.97643 1.21120 0.93910 0.97586 1.04213 1.19838 0.97189 0.90697 0.98052 1.20805 0.89114 1.03236 1.03373 1.21134 0.93392 0.97751 1.15013 1.18655 0.91283 0.90394 0.97837 1.55277 1.08474 1.02681 1.60532 1.21298 0.94015 0.89719 0.94477 0.94552 1.19613 0.93310 0.93863 0.97236 1.21196 1.03857 1.05514 1.26255 0.94817 1.25878 0.94583 1.02016 0.95874 1.70044 1.09878 1.38312 1.40124 0.85710 0.77662 0.79257 0.80321 1.19149 1.21277 1.16980 1.24082 0.95740 1.01050 1.03957 1.84931 1.16232 0.97688 1.89871 0.91957 0.92645 0.88850 0.83195 0.82593 0.89794 0.88959 0.92122 0.79189 0.95009 0.94338 0.92429 0.88570 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.34 9.10 71.24 0.65 -2.69 16 2 C -0.15 -4.92 5.91 -19.59 -0.12 -5.04 16 3 C -0.08 -2.14 9.64 22.18 0.21 -1.93 16 4 C -0.15 -3.51 9.70 22.24 0.22 -3.29 16 5 C -0.05 -1.43 5.90 -19.70 -0.12 -1.55 16 6 C -0.11 -2.27 9.52 71.24 0.68 -1.59 16 7 C -0.16 -5.29 6.05 22.64 0.14 -5.15 16 8 C 0.13 4.58 6.30 38.53 0.24 4.82 16 9 N -0.64 -25.62 5.61 -319.20 -1.79 -27.42 16 10 C 0.11 4.57 2.37 45.40 0.11 4.68 16 11 H 0.04 1.60 8.06 -2.39 -0.02 1.58 16 12 C 0.00 -0.05 3.72 29.85 0.11 0.06 16 13 C -0.53 -28.94 8.86 25.60 0.23 -28.71 16 14 H 0.03 2.03 7.48 -2.91 -0.02 2.01 16 15 C 0.01 0.82 5.47 84.66 0.46 1.28 16 16 N -0.94 -57.11 13.96 21.45 0.30 -56.81 16 17 Si 0.95 42.60 27.47 68.60 1.88 44.48 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 21 C -0.10 -3.29 6.06 72.22 0.44 -2.85 16 22 S -0.13 -4.08 20.13 -56.49 -1.14 -5.21 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.05 1.85 6.59 -2.39 -0.02 1.83 16 25 H 0.09 2.18 8.07 -2.38 -0.02 2.16 16 26 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 27 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 30 H 0.06 1.39 6.57 -2.39 -0.02 1.38 16 31 H 0.38 16.21 4.87 -89.70 -0.44 15.77 16 32 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 33 H 0.04 1.63 7.57 -2.39 -0.02 1.61 16 34 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.13 3.73 8.13 -2.39 -0.02 3.71 16 Total: -1.00 -63.46 297.99 3.09 -60.37 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.59 Total: 26.55 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 3.25 Total: -41.97 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -1.49 Total: -84.22 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.48 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -1.14 Total: -5.21 kcal Total: -63.46 3.09 -60.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214184585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.148 kcal (2) G-P(sol) polarization free energy of solvation -63.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds