Wall clock time and date at job start Mon Mar 30 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.69679 * 2 1 4 4 S 1.83953 * 110.95477 * 236.56859 * 2 1 3 5 5 C 1.83960 * 94.80533 * 207.15988 * 4 2 1 6 6 C 1.54254 * 102.58054 * 34.49184 * 5 4 2 7 7 C 1.52325 * 112.59111 * 335.47060 * 6 5 4 8 8 H 1.09000 * 108.76013 * 239.26256 * 7 6 5 9 9 N 1.46498 * 108.86810 * 120.82109 * 7 6 5 10 10 C 1.38857 * 120.00095 * 84.54526 * 9 7 6 11 11 C 1.39563 * 119.84133 * 0.02562 * 10 9 7 12 12 C 1.36339 * 120.16003 * 179.97438 * 11 10 9 13 13 C 1.40887 * 119.83819 * 359.97438 * 12 11 10 14 14 C 1.41129 * 120.15767 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00215 * 155.07011 * 14 13 12 16 16 C 1.39867 * 119.99964 * 335.07635 * 14 13 12 17 17 N 1.30896 * 119.99994 * 342.08108 * 16 14 13 18 18 Si 1.86802 * 119.99870 * 162.08073 * 16 14 13 19 19 H 1.48499 * 109.47408 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47058 * 120.00224 * 18 16 14 21 21 H 1.48504 * 109.47130 * 239.99598 * 18 16 14 22 22 C 1.40889 * 119.68799 * 0.02562 * 13 12 11 23 23 C 1.36339 * 119.83513 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.47141 * 289.50534 * 1 2 3 25 25 H 1.09003 * 109.46522 * 49.51157 * 1 2 3 26 26 H 1.09005 * 109.46626 * 169.50364 * 1 2 3 27 27 H 1.08996 * 110.78717 * 152.76798 * 5 4 2 28 28 H 1.09004 * 110.78520 * 276.02716 * 5 4 2 29 29 H 1.09010 * 108.86808 * 214.64882 * 6 5 4 30 30 H 1.09005 * 108.86810 * 96.29648 * 6 5 4 31 31 H 0.97002 * 120.00149 * 264.54358 * 9 7 6 32 32 H 1.08000 * 119.91911 * 359.97438 * 11 10 9 33 33 H 1.07998 * 120.08188 * 180.27752 * 12 11 10 34 34 H 0.96996 * 120.00252 * 180.02562 * 17 16 14 35 35 H 1.07997 * 120.08105 * 179.97438 * 22 13 12 36 36 H 1.08003 * 119.91706 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0197 0.0000 4 16 2.1879 -0.9464 -1.4336 5 6 3.7662 -1.4027 -0.6059 6 6 3.3352 -1.5810 0.8644 7 6 2.0775 -0.7920 1.2053 8 1 2.3088 -0.0941 2.0099 9 7 1.0455 -1.7227 1.6688 10 6 1.0158 -2.1201 2.9990 11 6 1.9703 -1.6305 3.8916 12 6 1.9469 -2.0160 5.1991 13 6 0.9556 -2.9105 5.6486 14 6 0.9253 -3.3144 7.0005 15 1 -0.0016 -3.6465 7.4443 16 6 2.0958 -3.2845 7.7656 17 7 3.2625 -3.2283 7.1750 18 14 1.9938 -3.3248 9.6304 19 1 0.5699 -3.3881 10.0471 20 1 2.7117 -4.5209 10.1396 21 1 2.6190 -2.0982 10.1870 22 6 -0.0049 -3.4007 4.7418 23 6 0.0307 -3.0066 3.4371 24 1 -0.3633 0.3431 0.9686 25 1 -0.3632 0.6673 -0.7816 26 1 -0.3633 -1.0105 -0.1872 27 1 4.1591 -2.3357 -1.0098 28 1 4.4994 -0.6019 -0.7029 29 1 4.1463 -1.2485 1.5123 30 1 3.1494 -2.6386 1.0515 31 1 0.3829 -2.0613 1.0466 32 1 2.7294 -0.9445 3.5457 33 1 2.6835 -1.6328 5.8897 34 1 4.0743 -3.2080 7.7055 35 1 -0.7674 -4.0870 5.0794 36 1 -0.7051 -3.3812 2.7409 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220885081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:40 Heat of formation + Delta-G solvation = 22.737383 kcal Electronic energy + Delta-G solvation = -17391.077964 eV Core-core repulsion = 14772.736080 eV Total energy + Delta-G solvation = -2618.341885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.64450 -36.73381 -33.76880 -32.20549 -31.66109 -29.49417 -28.40035 -26.13520 -24.21011 -23.34197 -21.25707 -20.64678 -19.12442 -17.25077 -17.00277 -16.25430 -15.55270 -15.00334 -14.43180 -14.09140 -14.01743 -13.54813 -13.27114 -12.79358 -12.67445 -12.35048 -12.04277 -11.85910 -11.73311 -11.36318 -11.18988 -11.07972 -11.00858 -10.79199 -10.65032 -10.49306 -9.84225 -9.70466 -9.31622 -9.26391 -8.58521 -7.74009 -7.52306 -6.66808 -6.41754 -4.05582 1.83846 2.27924 2.88420 3.07447 3.14154 3.19539 3.32491 4.03951 4.18589 4.45139 4.73211 4.86374 4.97105 5.05190 5.16297 5.30504 5.55242 5.70376 5.71224 5.79559 5.85541 6.03694 6.13760 6.23601 6.30427 6.34008 6.89821 6.91255 7.17825 7.33504 7.52781 7.66423 7.81266 8.13029 8.26462 8.46474 8.67110 8.77689 9.04071 9.12757 10.35197 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.040095 B = 0.004396 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.172129 B = 6368.183232 C = 6744.473205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.038 4.038 3 H 0.098 0.902 4 S -0.312 6.312 5 C -0.060 4.060 6 C -0.145 4.145 7 C 0.162 3.838 8 H 0.084 0.916 9 N -0.750 5.750 10 C 0.091 3.909 11 C -0.164 4.164 12 C -0.124 4.124 13 C 0.075 3.925 14 C -0.467 4.467 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.808 5.808 18 Si 0.901 3.099 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.274 1.274 22 C -0.186 4.186 23 C -0.157 4.157 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.388 0.612 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.275 0.725 35 H 0.091 0.909 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 5.687 -10.837 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 H 0.117 0.883 4 S -0.086 6.086 5 C -0.209 4.209 6 C -0.185 4.185 7 C 0.053 3.947 8 H 0.102 0.898 9 N -0.387 5.387 10 C -0.005 4.005 11 C -0.186 4.186 12 C -0.144 4.144 13 C 0.072 3.928 14 C -0.498 4.498 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.435 5.435 18 Si 0.726 3.274 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.200 1.200 22 C -0.206 4.206 23 C -0.179 4.179 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.223 0.777 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.320 5.537 -11.854 13.088 hybrid contribution 0.491 -0.018 1.700 1.770 sum 0.811 5.519 -10.154 11.585 Atomic orbital electron populations 1.21582 0.91501 1.02734 1.02717 1.24184 0.99868 1.00219 0.92469 0.88348 1.87895 1.23667 1.69964 1.27085 1.24096 0.95476 1.04418 0.96860 1.22726 0.98322 1.03727 0.93752 1.21078 0.87674 0.91006 0.94965 0.89795 1.44155 1.34139 1.52695 1.07713 1.17328 0.98434 1.01199 0.83581 1.20087 0.99696 1.04300 0.94539 1.20908 1.00943 0.98516 0.94032 1.17499 0.91451 0.90940 0.92900 1.19405 0.95225 1.39896 0.95293 0.90911 1.25785 0.94900 0.92742 1.00563 1.69858 0.98367 1.37885 1.37406 0.86380 0.79435 0.78331 0.83211 1.18610 1.20270 1.19963 1.20553 1.03247 1.04165 0.92675 1.19800 0.99565 1.02322 0.96178 0.90388 0.92380 0.91437 0.88193 0.89612 0.90671 0.89386 0.77669 0.89517 0.86548 0.91392 0.89075 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.34 37.16 0.31 -1.13 16 2 C -0.04 -0.46 3.87 -26.07 -0.10 -0.56 16 3 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 4 S -0.31 -3.98 22.73 -107.50 -2.44 -6.43 16 5 C -0.06 -0.68 7.46 37.81 0.28 -0.40 16 6 C -0.14 -1.94 5.89 -26.42 -0.16 -2.10 16 7 C 0.16 2.27 2.56 -67.62 -0.17 2.10 16 8 H 0.08 1.25 6.34 -51.93 -0.33 0.92 16 9 N -0.75 -12.28 4.22 -51.73 -0.22 -12.50 16 10 C 0.09 1.89 6.63 -83.69 -0.56 1.33 16 11 C -0.16 -3.68 9.04 -39.77 -0.36 -4.04 16 12 C -0.12 -3.17 8.63 -39.26 -0.34 -3.51 16 13 C 0.08 2.00 5.57 -106.79 -0.59 1.40 16 14 C -0.47 -12.58 9.03 -37.88 -0.34 -12.93 16 15 H 0.07 1.90 7.91 -52.49 -0.41 1.49 16 16 C 0.08 1.92 5.13 -17.34 -0.09 1.83 16 17 N -0.81 -21.24 10.99 55.54 0.61 -20.63 16 18 Si 0.90 19.08 29.60 -169.99 -5.03 14.05 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 C -0.19 -4.54 9.74 -39.26 -0.38 -4.92 16 23 C -0.16 -3.43 9.82 -39.77 -0.39 -3.82 16 24 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.80 6.61 -51.93 -0.34 0.45 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 30 H 0.09 1.38 7.79 -51.93 -0.40 0.98 16 31 H 0.39 5.99 6.58 -40.82 -0.27 5.72 16 32 H 0.09 1.75 6.10 -52.49 -0.32 1.43 16 33 H 0.12 3.11 6.20 -52.49 -0.33 2.78 16 34 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 301.30 15.07 4.54 4.54 Total: -1.00 -27.24 301.30 -10.35 -37.59 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.92 Total: 10.11 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.89 Total: -26.73 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.39 Total: -33.13 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -2.44 Total: -6.43 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.24 -10.35 -37.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220885081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.326 kcal (2) G-P(sol) polarization free energy of solvation -27.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds