Wall clock time and date at job start Mon Mar 30 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.69679 * 2 1 4 4 S 1.83953 * 110.95477 * 236.56859 * 2 1 3 5 5 C 1.83960 * 94.80533 * 207.15988 * 4 2 1 6 6 C 1.54254 * 102.58054 * 34.49184 * 5 4 2 7 7 C 1.52325 * 112.59111 * 335.47060 * 6 5 4 8 8 H 1.09000 * 108.76013 * 239.26256 * 7 6 5 9 9 N 1.46498 * 108.86810 * 120.82109 * 7 6 5 10 10 C 1.38857 * 120.00095 * 84.54526 * 9 7 6 11 11 C 1.39563 * 119.84133 * 0.02562 * 10 9 7 12 12 C 1.36339 * 120.16003 * 179.97438 * 11 10 9 13 13 C 1.40887 * 119.83819 * 359.97438 * 12 11 10 14 14 C 1.41129 * 120.15767 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00215 * 155.07011 * 14 13 12 16 16 C 1.39867 * 119.99964 * 335.07635 * 14 13 12 17 17 N 1.30896 * 119.99994 * 342.08108 * 16 14 13 18 18 Si 1.86802 * 119.99870 * 162.08073 * 16 14 13 19 19 H 1.48499 * 109.47408 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47058 * 120.00224 * 18 16 14 21 21 H 1.48504 * 109.47130 * 239.99598 * 18 16 14 22 22 C 1.40889 * 119.68799 * 0.02562 * 13 12 11 23 23 C 1.36339 * 119.83513 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.47141 * 289.50534 * 1 2 3 25 25 H 1.09003 * 109.46522 * 49.51157 * 1 2 3 26 26 H 1.09005 * 109.46626 * 169.50364 * 1 2 3 27 27 H 1.08996 * 110.78717 * 152.76798 * 5 4 2 28 28 H 1.09004 * 110.78520 * 276.02716 * 5 4 2 29 29 H 1.09010 * 108.86808 * 214.64882 * 6 5 4 30 30 H 1.09005 * 108.86810 * 96.29648 * 6 5 4 31 31 H 0.97002 * 120.00149 * 264.54358 * 9 7 6 32 32 H 1.08000 * 119.91911 * 359.97438 * 11 10 9 33 33 H 1.07998 * 120.08188 * 180.27752 * 12 11 10 34 34 H 0.96996 * 120.00252 * 180.02562 * 17 16 14 35 35 H 1.07997 * 120.08105 * 179.97438 * 22 13 12 36 36 H 1.08003 * 119.91706 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0197 0.0000 4 16 2.1879 -0.9464 -1.4336 5 6 3.7662 -1.4027 -0.6059 6 6 3.3352 -1.5810 0.8644 7 6 2.0775 -0.7920 1.2053 8 1 2.3088 -0.0941 2.0099 9 7 1.0455 -1.7227 1.6688 10 6 1.0158 -2.1201 2.9990 11 6 1.9703 -1.6305 3.8916 12 6 1.9469 -2.0160 5.1991 13 6 0.9556 -2.9105 5.6486 14 6 0.9253 -3.3144 7.0005 15 1 -0.0016 -3.6465 7.4443 16 6 2.0958 -3.2845 7.7656 17 7 3.2625 -3.2283 7.1750 18 14 1.9938 -3.3248 9.6304 19 1 0.5699 -3.3881 10.0471 20 1 2.7117 -4.5209 10.1396 21 1 2.6190 -2.0982 10.1870 22 6 -0.0049 -3.4007 4.7418 23 6 0.0307 -3.0066 3.4371 24 1 -0.3633 0.3431 0.9686 25 1 -0.3632 0.6673 -0.7816 26 1 -0.3633 -1.0105 -0.1872 27 1 4.1591 -2.3357 -1.0098 28 1 4.4994 -0.6019 -0.7029 29 1 4.1463 -1.2485 1.5123 30 1 3.1494 -2.6386 1.0515 31 1 0.3829 -2.0613 1.0466 32 1 2.7294 -0.9445 3.5457 33 1 2.6835 -1.6328 5.8897 34 1 4.0743 -3.2080 7.7055 35 1 -0.7674 -4.0870 5.0794 36 1 -0.7051 -3.3812 2.7409 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220885081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:39 Heat of formation + Delta-G solvation = 9.745563 kcal Electronic energy + Delta-G solvation = -17391.641332 eV Core-core repulsion = 14772.736080 eV Total energy + Delta-G solvation = -2618.905252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17198 -38.25847 -35.52655 -33.53467 -32.90228 -31.32617 -30.11054 -27.36221 -25.94112 -24.35662 -22.98752 -22.31653 -20.44501 -19.14919 -18.34910 -17.48800 -16.87089 -16.73975 -15.68802 -15.62029 -15.22036 -14.76836 -14.68205 -14.33551 -14.12474 -13.78336 -13.61638 -13.51852 -12.93261 -12.81042 -12.74003 -12.64681 -12.27331 -12.26021 -11.92707 -11.78392 -11.54924 -11.15662 -11.09969 -10.81658 -10.30782 -9.38498 -8.73713 -8.54529 -8.14847 -5.99696 0.87556 1.11105 1.19796 1.33046 1.40625 1.54441 1.58863 2.27934 2.80756 2.86559 3.41244 3.81997 3.88649 3.97094 4.09183 4.16835 4.31951 4.43164 4.52334 4.59303 4.77688 4.81826 4.89411 4.93908 5.06120 5.12188 5.22595 5.23763 5.30281 5.46834 5.71106 5.81686 5.97587 6.20308 6.41066 6.68395 6.88528 7.09937 7.14231 7.30924 8.48957 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.040095 B = 0.004396 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.172129 B = 6368.183232 C = 6744.473205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.028 4.028 3 H 0.118 0.882 4 S -0.334 6.334 5 C -0.049 4.049 6 C -0.142 4.142 7 C 0.158 3.842 8 H 0.080 0.920 9 N -0.738 5.738 10 C 0.118 3.882 11 C -0.171 4.171 12 C -0.142 4.142 13 C 0.035 3.965 14 C -0.507 4.507 15 H 0.065 0.935 16 C 0.034 3.966 17 N -0.842 5.842 18 Si 0.974 3.026 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.266 1.266 22 C -0.196 4.196 23 C -0.166 4.166 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.396 0.604 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.282 0.718 35 H 0.093 0.907 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 6.578 -12.220 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 H 0.136 0.864 4 S -0.108 6.108 5 C -0.197 4.197 6 C -0.182 4.182 7 C 0.049 3.951 8 H 0.098 0.902 9 N -0.374 5.374 10 C 0.019 3.981 11 C -0.193 4.193 12 C -0.162 4.162 13 C 0.032 3.968 14 C -0.538 4.538 15 H 0.084 0.916 16 C -0.178 4.178 17 N -0.470 5.470 18 Si 0.795 3.205 19 H -0.185 1.185 20 H -0.194 1.194 21 H -0.191 1.191 22 C -0.216 4.216 23 C -0.188 4.188 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.450 6.440 -13.292 14.777 hybrid contribution 0.427 -0.261 1.897 1.962 sum 0.877 6.179 -11.395 12.992 Atomic orbital electron populations 1.21568 0.90971 1.02800 1.03017 1.24175 1.00239 1.00562 0.90717 0.86442 1.88037 1.24826 1.70305 1.27649 1.24121 0.95104 1.05701 0.94817 1.22618 0.98135 1.01953 0.95521 1.21272 0.87322 0.90607 0.95873 0.90240 1.44181 1.34772 1.52447 1.06035 1.17379 0.96612 0.99013 0.85084 1.20233 1.00660 1.04697 0.93664 1.20840 1.00857 0.99307 0.95181 1.17808 0.92971 0.92376 0.93630 1.19611 0.95672 1.42141 0.96396 0.91641 1.26557 0.94145 0.91955 1.05137 1.69914 0.99013 1.38884 1.39200 0.85293 0.79341 0.78685 0.77142 1.18534 1.19442 1.19085 1.20737 1.02908 1.04270 0.93658 1.20073 1.00507 1.02447 0.95754 0.90890 0.90782 0.91981 0.87371 0.87474 0.90205 0.91745 0.76684 0.87444 0.88496 0.90809 0.88836 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.34 71.98 0.60 -1.88 16 2 C -0.03 -0.59 3.87 31.02 0.12 -0.47 16 3 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 4 S -0.33 -7.59 22.73 -56.49 -1.28 -8.88 16 5 C -0.05 -0.98 7.46 72.41 0.54 -0.44 16 6 C -0.14 -3.49 5.89 30.80 0.18 -3.31 16 7 C 0.16 4.03 2.56 45.20 0.12 4.15 16 8 H 0.08 2.16 6.34 -2.39 -0.02 2.15 16 9 N -0.74 -22.56 4.22 -317.57 -1.34 -23.90 16 10 C 0.12 4.75 6.63 38.67 0.26 5.01 16 11 C -0.17 -7.57 9.04 22.15 0.20 -7.37 16 12 C -0.14 -7.46 8.63 22.48 0.19 -7.26 16 13 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 14 C -0.51 -28.42 9.03 23.37 0.21 -28.21 16 15 H 0.07 3.59 7.91 -2.91 -0.02 3.57 16 16 C 0.03 1.78 5.13 85.23 0.44 2.21 16 17 N -0.84 -45.60 10.99 21.82 0.24 -45.36 16 18 Si 0.97 39.96 29.60 68.60 2.03 41.99 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 C -0.20 -9.69 9.74 22.48 0.22 -9.47 16 23 C -0.17 -7.09 9.82 22.15 0.22 -6.87 16 24 H 0.07 1.54 8.10 -2.39 -0.02 1.52 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.30 6.61 -2.38 -0.02 1.28 16 27 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.06 1.92 7.79 -2.38 -0.02 1.90 16 31 H 0.40 11.19 6.58 -92.71 -0.61 10.58 16 32 H 0.11 4.23 6.10 -2.91 -0.02 4.22 16 33 H 0.10 5.40 6.20 -2.91 -0.02 5.38 16 34 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 35 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -59.94 301.30 3.29 -56.65 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.47 Total: 31.60 kcal Atomic # 6 Polarization: -55.28 SS G_CDS: 3.17 Total: -52.10 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -1.10 Total: -69.26 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.28 Total: -8.88 kcal Total: -59.94 3.29 -56.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220885081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.396 kcal (2) G-P(sol) polarization free energy of solvation -59.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds