Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00584 * 2 1 4 4 S 1.81403 * 109.47153 * 104.99537 * 3 2 1 5 5 C 1.50705 * 119.99596 * 179.97438 * 2 1 3 6 6 N 1.46498 * 109.46994 * 94.99961 * 5 2 1 7 7 C 1.46500 * 120.00184 * 269.99731 * 6 5 2 8 8 C 1.50695 * 109.47360 * 270.00092 * 7 6 5 9 9 H 1.08006 * 119.99886 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00437 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99649 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47228 * 89.99920 * 12 10 8 14 14 H 1.48498 * 109.47336 * 210.00054 * 12 10 8 15 15 H 1.48502 * 109.46761 * 329.99956 * 12 10 8 16 16 C 1.39678 * 119.99677 * 90.00160 * 6 5 2 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 6 5 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.08001 * 119.99479 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.00220 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47596 * 225.00327 * 3 2 1 25 25 H 1.09007 * 109.46832 * 345.00149 * 3 2 1 26 26 H 1.34497 * 102.99859 * 180.02562 * 4 3 2 27 27 H 1.08995 * 109.47140 * 335.00002 * 5 2 1 28 28 H 1.09000 * 109.47152 * 215.00370 * 5 2 1 29 29 H 1.08994 * 109.46748 * 30.00133 * 7 6 5 30 30 H 1.09004 * 109.46919 * 150.00058 * 7 6 5 31 31 H 0.97006 * 120.00477 * 180.02562 * 11 10 8 32 32 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 33 33 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 34 34 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 35 35 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 36 36 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 16 2.7492 1.6073 1.6520 5 6 2.0634 -1.3052 0.0006 6 7 2.4118 -1.6685 -1.3752 7 6 1.4914 -2.4822 -2.1734 8 6 1.8098 -3.9417 -1.9748 9 1 2.6173 -4.2340 -1.3198 10 6 1.0703 -4.9039 -2.6292 11 7 0.0873 -4.5479 -3.4271 12 14 1.4645 -6.7131 -2.3825 13 1 0.6768 -7.2399 -1.2392 14 1 1.1164 -7.4678 -3.6130 15 1 2.9138 -6.8696 -2.0991 16 6 3.6216 -1.2392 -1.9259 17 6 3.9532 -1.5824 -3.2305 18 6 5.1498 -1.1559 -3.7720 19 6 6.0173 -0.3876 -3.0173 20 6 5.6902 -0.0441 -1.7183 21 6 4.4952 -0.4673 -1.1706 22 1 -0.5399 0.9354 -0.0004 23 1 -0.5400 -0.9352 0.0004 24 1 2.8746 1.2563 -0.7267 25 1 1.3856 2.1161 -0.2660 26 1 3.3831 2.7845 1.5057 27 1 1.4385 -2.0853 0.4352 28 1 2.9741 -1.1988 0.5900 29 1 0.4667 -2.2875 -1.8570 30 1 1.6011 -2.2265 -3.2273 31 1 -0.4333 -5.2248 -3.8873 32 1 3.2780 -2.1859 -3.8190 33 1 5.4085 -1.4227 -4.7861 34 1 6.9523 -0.0549 -3.4434 35 1 6.3697 0.5564 -1.1318 36 1 4.2406 -0.1991 -0.1558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231631876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = 51.101138 kcal Electronic energy + Delta-G solvation = -17646.896860 eV Core-core repulsion = 15029.784920 eV Total energy + Delta-G solvation = -2617.111940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.01584 -36.55873 -34.26971 -32.53685 -30.34906 -29.20235 -27.72292 -27.19291 -24.97538 -22.80634 -21.49617 -20.11243 -18.77448 -17.03544 -16.91526 -16.42141 -15.16492 -15.03059 -14.81072 -14.49565 -14.19570 -13.93788 -13.45760 -13.11306 -12.75092 -12.64491 -12.14073 -11.97272 -11.37075 -11.24586 -11.08437 -10.92746 -10.77888 -10.67784 -10.58881 -10.25165 -9.91778 -9.79353 -8.96102 -8.89264 -8.50568 -8.27921 -8.03748 -6.50660 -6.03190 -4.17450 1.38187 2.08797 2.30439 2.59082 2.84755 3.26437 3.33549 3.38307 4.21207 4.42354 4.56125 4.83175 4.94867 5.21605 5.45280 5.49672 5.55585 5.61850 5.73105 5.87517 6.07024 6.08710 6.25214 6.33887 6.41768 6.63100 6.72806 6.94521 6.98093 7.09601 7.18964 7.26392 7.36614 7.60987 7.81297 8.15635 8.26435 8.47804 8.92054 9.49604 10.95215 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.007003 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.822691 B = 3997.312848 C = 5182.731736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.031 4.031 4 S -0.245 6.245 5 C 0.159 3.841 6 N -0.604 5.604 7 C 0.251 3.749 8 C -0.531 4.531 9 H 0.060 0.940 10 C 0.062 3.938 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.239 3.761 17 C -0.187 4.187 18 C -0.078 4.078 19 C -0.205 4.205 20 C -0.080 4.080 21 C -0.226 4.226 22 H 0.096 0.904 23 H 0.110 0.890 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 10.703 4.870 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.133 4.133 3 C -0.178 4.178 4 S -0.091 6.091 5 C 0.035 3.965 6 N -0.309 5.309 7 C 0.132 3.868 8 C -0.570 4.570 9 H 0.078 0.922 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.722 3.278 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.198 1.198 16 C 0.133 3.867 17 C -0.209 4.209 18 C -0.097 4.097 19 C -0.225 4.225 20 C -0.099 4.099 21 C -0.249 4.249 22 H 0.114 0.886 23 H 0.128 0.872 24 H 0.118 0.882 25 H 0.101 0.899 26 H 0.042 0.958 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.354 10.509 5.689 12.718 hybrid contribution 0.270 -0.217 -1.027 1.084 sum 4.624 10.293 4.662 12.209 Atomic orbital electron populations 1.23874 0.94924 1.02349 0.97689 1.21684 0.95368 0.94349 1.01913 1.22302 1.02665 0.98994 0.93884 1.87574 1.70740 1.30635 1.20185 1.20276 0.99178 0.92159 0.84881 1.47149 1.17523 1.53818 1.12410 1.19261 0.87840 0.88818 0.90909 1.21597 1.16645 0.91121 1.27635 0.92187 1.24944 0.94897 0.99199 0.94941 1.69929 1.20278 1.33912 1.29284 0.86544 0.78848 0.84774 0.77609 1.20610 1.21155 1.19808 1.17944 0.85997 0.90831 0.91947 1.20926 0.98973 1.05798 0.95231 1.20821 0.93652 0.96420 0.98767 1.20663 1.00651 1.05558 0.95662 1.20678 0.95615 0.98576 0.95023 1.20780 0.96613 1.06789 1.00696 0.88572 0.87169 0.88228 0.89948 0.95808 0.89624 0.90580 0.95100 0.94770 0.92687 0.85092 0.87179 0.87765 0.87576 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 13.89 29.01 0.40 -1.62 16 2 C -0.13 -1.93 4.89 -101.07 -0.49 -2.42 16 3 C -0.03 -0.40 5.86 36.00 0.21 -0.19 16 4 S -0.24 -3.08 25.69 -107.50 -2.76 -5.84 16 5 C 0.16 2.75 5.37 -5.19 -0.03 2.72 16 6 N -0.60 -12.26 2.57 -174.50 -0.45 -12.71 16 7 C 0.25 6.04 4.91 -5.20 -0.03 6.01 16 8 C -0.53 -14.11 9.39 -34.44 -0.32 -14.43 16 9 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.90 -25.15 13.29 55.43 0.74 -24.42 16 12 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.24 4.70 6.55 -83.78 -0.55 4.15 16 17 C -0.19 -3.74 9.20 -39.38 -0.36 -4.11 16 18 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 19 C -0.20 -3.25 10.04 -39.54 -0.40 -3.65 16 20 C -0.08 -1.26 10.04 -39.61 -0.40 -1.66 16 21 C -0.23 -3.88 7.41 -39.38 -0.29 -4.17 16 22 H 0.10 1.13 7.90 -52.49 -0.41 0.72 16 23 H 0.11 1.61 7.99 -52.49 -0.42 1.19 16 24 H 0.10 1.40 5.87 -51.92 -0.30 1.10 16 25 H 0.08 0.95 7.86 -51.92 -0.41 0.54 16 26 H 0.08 0.88 9.07 97.61 0.89 1.77 16 27 H 0.09 1.54 7.92 -51.93 -0.41 1.12 16 28 H 0.08 1.26 6.20 -51.93 -0.32 0.94 16 29 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 30 H 0.03 0.88 6.20 -51.93 -0.32 0.56 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.13 2.88 6.15 -52.49 -0.32 2.56 16 33 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.10 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.12 1.94 5.00 -52.48 -0.26 1.68 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -27.44 313.99 -9.05 -36.49 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.53 Total: 5.24 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -2.75 Total: -19.52 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.29 Total: -37.13 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.76 Total: -5.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.44 -9.05 -36.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231631876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.590 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds