Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00584 * 2 1 4 4 S 1.81403 * 109.47153 * 104.99537 * 3 2 1 5 5 C 1.50705 * 119.99596 * 179.97438 * 2 1 3 6 6 N 1.46498 * 109.46994 * 94.99961 * 5 2 1 7 7 C 1.46500 * 120.00184 * 269.99731 * 6 5 2 8 8 C 1.50695 * 109.47360 * 270.00092 * 7 6 5 9 9 H 1.08006 * 119.99886 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00437 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99649 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47228 * 89.99920 * 12 10 8 14 14 H 1.48498 * 109.47336 * 210.00054 * 12 10 8 15 15 H 1.48502 * 109.46761 * 329.99956 * 12 10 8 16 16 C 1.39678 * 119.99677 * 90.00160 * 6 5 2 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 6 5 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.08001 * 119.99479 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.00220 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47596 * 225.00327 * 3 2 1 25 25 H 1.09007 * 109.46832 * 345.00149 * 3 2 1 26 26 H 1.34497 * 102.99859 * 180.02562 * 4 3 2 27 27 H 1.08995 * 109.47140 * 335.00002 * 5 2 1 28 28 H 1.09000 * 109.47152 * 215.00370 * 5 2 1 29 29 H 1.08994 * 109.46748 * 30.00133 * 7 6 5 30 30 H 1.09004 * 109.46919 * 150.00058 * 7 6 5 31 31 H 0.97006 * 120.00477 * 180.02562 * 11 10 8 32 32 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 33 33 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 34 34 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 35 35 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 36 36 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 16 2.7492 1.6073 1.6520 5 6 2.0634 -1.3052 0.0006 6 7 2.4118 -1.6685 -1.3752 7 6 1.4914 -2.4822 -2.1734 8 6 1.8098 -3.9417 -1.9748 9 1 2.6173 -4.2340 -1.3198 10 6 1.0703 -4.9039 -2.6292 11 7 0.0873 -4.5479 -3.4271 12 14 1.4645 -6.7131 -2.3825 13 1 0.6768 -7.2399 -1.2392 14 1 1.1164 -7.4678 -3.6130 15 1 2.9138 -6.8696 -2.0991 16 6 3.6216 -1.2392 -1.9259 17 6 3.9532 -1.5824 -3.2305 18 6 5.1498 -1.1559 -3.7720 19 6 6.0173 -0.3876 -3.0173 20 6 5.6902 -0.0441 -1.7183 21 6 4.4952 -0.4673 -1.1706 22 1 -0.5399 0.9354 -0.0004 23 1 -0.5400 -0.9352 0.0004 24 1 2.8746 1.2563 -0.7267 25 1 1.3856 2.1161 -0.2660 26 1 3.3831 2.7845 1.5057 27 1 1.4385 -2.0853 0.4352 28 1 2.9741 -1.1988 0.5900 29 1 0.4667 -2.2875 -1.8570 30 1 1.6011 -2.2265 -3.2273 31 1 -0.4333 -5.2248 -3.8873 32 1 3.2780 -2.1859 -3.8190 33 1 5.4085 -1.4227 -4.7861 34 1 6.9523 -0.0549 -3.4434 35 1 6.3697 0.5564 -1.1318 36 1 4.2406 -0.1991 -0.1558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231631876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = 38.333315 kcal Electronic energy + Delta-G solvation = -17647.450515 eV Core-core repulsion = 15029.784920 eV Total energy + Delta-G solvation = -2617.665594 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.43929 -37.89005 -35.79149 -34.41743 -31.75651 -30.67862 -29.35869 -28.34795 -26.61687 -24.53914 -22.89684 -21.57806 -19.96148 -18.61871 -18.33146 -17.96302 -16.86316 -16.39571 -16.09159 -15.93301 -15.59265 -15.12241 -14.76897 -14.65901 -14.37088 -14.07363 -13.65717 -13.25992 -13.13787 -12.94899 -12.56605 -12.40150 -12.35283 -12.27797 -11.98344 -11.73270 -11.58215 -11.35715 -10.60564 -10.48743 -10.10112 -9.64617 -9.02127 -8.34120 -7.80459 -6.33197 0.36836 0.71029 0.93573 1.38303 1.39623 1.49155 1.52539 1.84629 2.37882 2.77401 3.09834 3.18463 3.70191 3.83596 4.17262 4.26840 4.33222 4.41180 4.52380 4.63511 4.76845 4.82112 4.88881 4.93519 5.01022 5.14961 5.26258 5.36013 5.56532 5.61859 5.73666 5.78960 5.83186 5.90816 6.12367 6.24571 6.54515 6.87001 6.96870 7.38627 8.86131 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.007003 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.822691 B = 3997.312848 C = 5182.731736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C -0.022 4.022 4 S -0.253 6.253 5 C 0.161 3.839 6 N -0.613 5.613 7 C 0.272 3.728 8 C -0.540 4.540 9 H 0.048 0.952 10 C 0.016 3.984 11 N -0.925 5.925 12 Si 0.957 3.043 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.274 1.274 16 C 0.215 3.785 17 C -0.219 4.219 18 C -0.081 4.081 19 C -0.196 4.196 20 C -0.075 4.075 21 C -0.221 4.221 22 H 0.124 0.876 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.013 0.987 30 H 0.009 0.991 31 H 0.266 0.734 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.158 11.965 5.725 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C -0.170 4.170 4 S -0.100 6.100 5 C 0.038 3.962 6 N -0.320 5.320 7 C 0.151 3.849 8 C -0.579 4.579 9 H 0.066 0.934 10 C -0.184 4.184 11 N -0.565 5.565 12 Si 0.782 3.218 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.199 1.199 16 C 0.111 3.889 17 C -0.242 4.242 18 C -0.100 4.100 19 C -0.216 4.216 20 C -0.094 4.094 21 C -0.243 4.243 22 H 0.142 0.858 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.109 11.791 6.558 14.810 hybrid contribution -0.186 -0.536 -1.300 1.418 sum 5.922 11.254 5.258 13.762 Atomic orbital electron populations 1.24013 0.94808 1.03006 0.96479 1.21573 0.95612 0.94111 1.02987 1.22168 1.02521 0.98347 0.93970 1.87625 1.71050 1.31722 1.19598 1.20298 0.99536 0.93105 0.83274 1.46958 1.17589 1.54284 1.13135 1.18709 0.87770 0.88378 0.90055 1.21810 1.16158 0.92707 1.27251 0.93358 1.25701 0.94748 1.03268 0.94648 1.70029 1.21152 1.35225 1.30084 0.85575 0.78487 0.79907 0.77838 1.19667 1.20566 1.19854 1.18184 0.86284 0.92138 0.92288 1.20852 1.00126 1.07378 0.95794 1.21068 0.92777 0.96287 0.99863 1.21066 1.01206 1.03870 0.95505 1.21121 0.95205 0.97800 0.95264 1.20941 0.96608 1.05844 1.00934 0.85829 0.88621 0.89145 0.88092 0.94103 0.91318 0.89805 0.96864 0.97348 0.92491 0.88584 0.85456 0.84382 0.83977 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 13.89 67.78 0.94 -2.93 16 2 C -0.14 -4.10 4.89 -16.49 -0.08 -4.18 16 3 C -0.02 -0.55 5.86 71.23 0.42 -0.13 16 4 S -0.25 -5.79 25.69 -56.49 -1.45 -7.24 16 5 C 0.16 5.67 5.37 85.63 0.46 6.13 16 6 N -0.61 -25.85 2.57 -705.98 -1.82 -27.66 16 7 C 0.27 13.86 4.91 85.63 0.42 14.28 16 8 C -0.54 -29.92 9.39 25.60 0.24 -29.68 16 9 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 10 C 0.02 0.87 5.46 84.65 0.46 1.33 16 11 N -0.92 -53.59 13.29 21.45 0.28 -53.31 16 12 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 15 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 16 C 0.22 8.60 6.55 38.21 0.25 8.85 16 17 C -0.22 -9.05 9.20 22.40 0.21 -8.85 16 18 C -0.08 -2.74 10.04 22.25 0.22 -2.51 16 19 C -0.20 -5.60 10.04 22.29 0.22 -5.37 16 20 C -0.08 -2.12 10.04 22.25 0.22 -1.89 16 21 C -0.22 -7.22 7.41 22.40 0.17 -7.05 16 22 H 0.12 2.68 7.90 -2.91 -0.02 2.66 16 23 H 0.10 2.89 7.99 -2.91 -0.02 2.87 16 24 H 0.09 2.39 5.87 -2.39 -0.01 2.38 16 25 H 0.10 2.08 7.86 -2.39 -0.02 2.06 16 26 H 0.10 1.86 9.07 73.35 0.67 2.52 16 27 H 0.07 2.58 7.92 -2.39 -0.02 2.56 16 28 H 0.08 2.76 6.20 -2.39 -0.01 2.75 16 29 H 0.01 0.71 8.07 -2.39 -0.02 0.69 16 30 H 0.01 0.48 6.20 -2.39 -0.01 0.46 16 31 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 32 H 0.10 4.58 6.15 -2.91 -0.02 4.56 16 33 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 34 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.13 4.00 5.00 -2.91 -0.01 3.98 16 Total: -1.00 -60.44 313.99 4.94 -55.50 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.74 Total: 18.76 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 4.15 Total: -31.99 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -1.53 Total: -80.97 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -5.79 SS G_CDS: -1.45 Total: -7.24 kcal Total: -60.44 4.94 -55.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231631876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.835 kcal (2) G-P(sol) polarization free energy of solvation -60.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds