Wall clock time and date at job start Mon Mar 30 2020 07:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.53000 * 109.46770 * 270.21487 * 7 6 5 9 9 O 1.45204 * 109.47216 * 179.97438 * 8 7 6 10 10 C 1.34632 * 117.00296 * 179.97438 * 9 8 7 11 11 O 1.21515 * 119.99909 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00051 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99888 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47193 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00230 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00118 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00233 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46869 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47467 * 119.99794 * 18 16 14 21 21 H 1.48497 * 109.47376 * 239.99866 * 18 16 14 22 22 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 24 24 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 25 25 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 26 26 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 28 28 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 29 29 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 30 30 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 31 31 H 1.08997 * 109.47347 * 299.99738 * 8 7 6 32 32 H 1.09001 * 109.47565 * 60.00121 * 8 7 6 33 33 H 0.96994 * 120.00397 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.47370 * 299.99595 * 13 12 10 35 35 H 1.09001 * 109.47182 * 59.99956 * 13 12 10 36 36 H 0.96997 * 120.00177 * 180.02562 * 17 16 14 37 37 H 1.08001 * 119.99700 * 359.96970 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 8 5.3156 -4.2009 -1.4432 10 6 5.6208 -4.7304 -2.6428 11 8 5.2896 -4.1574 -3.6619 12 7 6.2937 -5.8960 -2.7133 13 6 6.6264 -6.4719 -4.0187 14 6 7.3738 -7.7655 -3.8214 15 1 7.5801 -8.1232 -2.8233 16 6 7.7935 -8.4930 -4.9148 17 7 7.5419 -8.0578 -6.1301 18 14 8.7194 -10.0968 -4.6702 19 1 8.8728 -10.3631 -3.2173 20 1 7.9603 -11.2076 -5.2990 21 1 10.0605 -9.9952 -5.2996 22 6 2.1981 -1.1970 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.6583 2.1326 0.0004 27 1 4.1204 2.1326 0.0010 28 1 5.3517 -0.0001 -0.0091 29 1 5.2866 -2.3718 0.5133 30 1 3.7450 -3.2618 0.5132 31 1 3.6367 -3.0740 -1.9569 32 1 5.1782 -2.1841 -1.9569 33 1 6.5578 -6.3537 -1.8999 34 1 5.7092 -6.6632 -4.5758 35 1 7.2507 -5.7733 -4.5756 36 1 7.8368 -8.5698 -6.8994 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243680088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:01 Heat of formation + Delta-G solvation = -80.615524 kcal Electronic energy + Delta-G solvation = -18341.378942 eV Core-core repulsion = 15275.802468 eV Total energy + Delta-G solvation = -3065.576474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90251 -39.46681 -36.35248 -34.24626 -34.07033 -32.47401 -32.27270 -29.21008 -27.30656 -27.05646 -24.04833 -22.69467 -22.14381 -20.57645 -20.38670 -18.41691 -16.67327 -16.32634 -16.24936 -15.94904 -15.50425 -15.04051 -14.73440 -14.08423 -13.87230 -13.56955 -13.37890 -13.29258 -13.07112 -12.59179 -12.27180 -12.21137 -12.01815 -11.55573 -11.47202 -11.22588 -11.14336 -10.96023 -10.92319 -10.35175 -10.15569 -9.79116 -9.41587 -9.00146 -8.80338 -8.79332 -7.99207 -6.19750 -4.26798 1.10515 1.18329 2.85636 3.23348 3.30690 3.34493 3.55617 3.59530 4.30400 4.52614 4.57993 4.68826 4.92161 4.98788 5.00139 5.08129 5.16812 5.26596 5.33780 5.34864 5.43185 5.47361 5.55727 5.73194 5.82300 5.93394 5.95523 6.26097 6.36311 6.43666 6.76004 6.80962 7.29284 7.34788 7.45104 7.63627 7.91762 8.54763 8.75057 9.16729 9.40535 10.90547 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050916 B = 0.002734 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.794983 B =10238.752907 C =10314.809376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.124 4.124 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.076 4.076 7 C -0.080 4.080 8 C 0.095 3.905 9 O -0.382 6.382 10 C 0.633 3.367 11 O -0.585 6.585 12 N -0.690 5.690 13 C 0.265 3.735 14 C -0.543 4.543 15 H 0.066 0.934 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.113 4.113 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.191 15.736 14.762 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.136 4.136 6 C -0.076 4.076 7 C -0.118 4.118 8 C 0.019 3.981 9 O -0.297 6.297 10 C 0.384 3.616 11 O -0.475 6.475 12 N -0.346 5.346 13 C 0.145 3.855 14 C -0.581 4.581 15 H 0.085 0.915 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.131 4.131 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.231 0.769 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.355 16.010 14.057 23.689 hybrid contribution 0.613 -0.933 0.218 1.137 sum -9.742 15.077 14.276 22.935 Atomic orbital electron populations 1.20801 0.91162 1.02720 1.02483 1.19923 0.96122 0.93125 0.99517 1.21037 0.94320 0.97462 1.01383 1.21129 0.94296 0.97984 0.99930 1.21103 1.00085 0.91934 1.00475 1.19655 0.93637 0.94391 0.99918 1.20521 1.01099 0.94101 0.96035 1.22724 0.96134 0.82787 0.96431 1.86172 1.71633 1.39084 1.32812 1.18360 0.79217 0.82626 0.81369 1.90947 1.58934 1.62886 1.34729 1.45458 1.56586 1.19748 1.12835 1.19197 0.96331 0.92787 0.77152 1.21235 1.37511 1.05860 0.93535 0.91540 1.24949 0.95871 0.98386 0.94804 1.69986 1.45509 1.38877 0.97890 0.86303 0.79348 0.82511 0.78408 1.19546 1.20754 1.20749 1.20995 0.93489 0.97832 1.00773 0.91047 0.91468 0.91617 0.86212 0.85983 0.85827 0.89741 0.89778 0.91403 0.91387 0.76916 0.95218 0.95221 0.92395 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 4 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 5 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 6 C -0.08 -0.81 5.13 -104.63 -0.54 -1.35 16 7 C -0.08 -0.88 5.72 -27.88 -0.16 -1.04 16 8 C 0.09 1.39 5.46 37.16 0.20 1.59 16 9 O -0.38 -6.84 10.27 -40.30 -0.41 -7.25 16 10 C 0.63 13.93 8.75 54.05 0.47 14.41 16 11 O -0.58 -14.77 16.13 -19.28 -0.31 -15.08 16 12 N -0.69 -15.46 5.55 -66.47 -0.37 -15.83 16 13 C 0.26 7.09 5.43 -5.19 -0.03 7.07 16 14 C -0.54 -14.77 9.28 -34.44 -0.32 -15.08 16 15 H 0.07 1.70 7.60 -52.48 -0.40 1.30 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 18 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.11 -1.15 9.36 -39.58 -0.37 -1.52 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 25 H 0.06 0.38 8.09 -51.92 -0.42 -0.04 16 26 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 27 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.40 7.80 8.43 -40.82 -0.34 7.46 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -32.01 325.64 -8.09 -40.10 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.36 Total: 3.23 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.26 Total: -0.63 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.37 Total: -41.05 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.73 Total: -22.33 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.01 -8.09 -40.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243680088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.514 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds