Wall clock time and date at job start Mon Mar 30 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.53000 * 109.46770 * 270.21487 * 7 6 5 9 9 O 1.45204 * 109.47216 * 179.97438 * 8 7 6 10 10 C 1.34632 * 117.00296 * 179.97438 * 9 8 7 11 11 O 1.21515 * 119.99909 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00051 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99888 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47193 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00230 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00118 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00233 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46869 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47467 * 119.99794 * 18 16 14 21 21 H 1.48497 * 109.47376 * 239.99866 * 18 16 14 22 22 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 24 24 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 25 25 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 26 26 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 28 28 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 29 29 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 30 30 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 31 31 H 1.08997 * 109.47347 * 299.99738 * 8 7 6 32 32 H 1.09001 * 109.47565 * 60.00121 * 8 7 6 33 33 H 0.96994 * 120.00397 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.47370 * 299.99595 * 13 12 10 35 35 H 1.09001 * 109.47182 * 59.99956 * 13 12 10 36 36 H 0.96997 * 120.00177 * 180.02562 * 17 16 14 37 37 H 1.08001 * 119.99700 * 359.96970 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 8 5.3156 -4.2009 -1.4432 10 6 5.6208 -4.7304 -2.6428 11 8 5.2896 -4.1574 -3.6619 12 7 6.2937 -5.8960 -2.7133 13 6 6.6264 -6.4719 -4.0187 14 6 7.3738 -7.7655 -3.8214 15 1 7.5801 -8.1232 -2.8233 16 6 7.7935 -8.4930 -4.9148 17 7 7.5419 -8.0578 -6.1301 18 14 8.7194 -10.0968 -4.6702 19 1 8.8728 -10.3631 -3.2173 20 1 7.9603 -11.2076 -5.2990 21 1 10.0605 -9.9952 -5.2996 22 6 2.1981 -1.1970 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.6583 2.1326 0.0004 27 1 4.1204 2.1326 0.0010 28 1 5.3517 -0.0001 -0.0091 29 1 5.2866 -2.3718 0.5133 30 1 3.7450 -3.2618 0.5132 31 1 3.6367 -3.0740 -1.9569 32 1 5.1782 -2.1841 -1.9569 33 1 6.5578 -6.3537 -1.8999 34 1 5.7092 -6.6632 -4.5758 35 1 7.2507 -5.7733 -4.5756 36 1 7.8368 -8.5698 -6.8994 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243680088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:00 Heat of formation + Delta-G solvation = -100.322937 kcal Electronic energy + Delta-G solvation = -18342.233520 eV Core-core repulsion = 15275.802468 eV Total energy + Delta-G solvation = -3066.431052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44462 -40.37472 -37.96462 -36.22794 -35.01727 -34.39041 -33.09477 -30.30292 -29.18038 -27.74312 -25.45655 -24.37650 -22.90007 -22.24382 -21.32769 -20.19584 -18.20664 -17.76951 -17.74672 -17.34905 -16.71895 -16.44793 -15.74327 -15.30684 -15.24015 -15.04612 -14.50480 -14.19958 -14.08536 -14.02840 -13.85964 -13.17958 -13.15999 -12.90480 -12.79702 -12.68034 -12.49867 -12.24408 -11.98155 -11.90601 -11.65543 -11.53092 -11.47739 -10.84998 -10.01319 -9.74197 -9.52400 -8.30764 -6.47333 0.34258 0.46457 1.26920 1.46369 1.46674 1.60885 1.78105 2.38665 2.79373 3.04848 3.39053 3.78697 3.86904 4.02021 4.08161 4.10464 4.26097 4.31337 4.49033 4.53596 4.67724 4.78346 4.82996 4.86575 4.99756 5.02870 5.17392 5.17906 5.28143 5.30894 5.46454 5.55526 5.59004 5.65633 5.69081 5.79533 6.11344 6.60103 6.71902 7.21373 7.43757 8.81739 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050916 B = 0.002734 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.794983 B =10238.752907 C =10314.809376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.122 4.122 5 C -0.131 4.131 6 C -0.092 4.092 7 C -0.066 4.066 8 C 0.090 3.910 9 O -0.367 6.367 10 C 0.637 3.363 11 O -0.621 6.621 12 N -0.683 5.683 13 C 0.282 3.718 14 C -0.557 4.557 15 H 0.086 0.914 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.988 3.012 19 H -0.254 1.254 20 H -0.278 1.278 21 H -0.278 1.278 22 C -0.128 4.128 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.413 0.587 34 H -0.003 1.003 35 H -0.003 1.003 36 H 0.270 0.730 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.134 15.623 16.600 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.092 4.092 7 C -0.104 4.104 8 C 0.015 3.985 9 O -0.281 6.281 10 C 0.390 3.610 11 O -0.513 6.513 12 N -0.341 5.341 13 C 0.160 3.840 14 C -0.594 4.594 15 H 0.104 0.896 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.811 3.189 19 H -0.177 1.177 20 H -0.204 1.204 21 H -0.203 1.203 22 C -0.146 4.146 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.159 0.841 27 H 0.160 0.840 28 H 0.150 0.850 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.250 0.750 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.079 0.921 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.309 15.914 15.960 24.785 hybrid contribution 0.512 -0.750 -0.330 0.966 sum -9.797 15.165 15.630 23.880 Atomic orbital electron populations 1.20841 0.89606 1.03721 1.02901 1.20259 0.97457 0.93014 0.98995 1.21383 0.94526 0.98283 1.00492 1.21440 0.94705 0.98531 0.99290 1.21327 1.00750 0.92188 1.00656 1.19680 0.93959 0.94275 1.01272 1.20446 1.01989 0.94657 0.93271 1.23071 0.95198 0.81038 0.99204 1.86195 1.71546 1.40347 1.30020 1.18377 0.78448 0.82199 0.81981 1.90924 1.60147 1.63818 1.36452 1.45091 1.56822 1.20166 1.12062 1.18697 0.94202 0.92608 0.78448 1.21590 1.37438 1.05788 0.94614 0.89629 1.26044 0.96622 1.02445 0.94257 1.70132 1.46741 1.40789 0.99082 0.85063 0.77537 0.77118 0.79198 1.17733 1.20356 1.20349 1.21201 0.93558 0.98658 1.01142 0.90821 0.90975 0.90187 0.84090 0.83966 0.85004 0.88668 0.88799 0.92025 0.91938 0.75046 0.98530 0.98534 0.92060 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.24 0.71 -0.68 16 2 C -0.10 -1.69 5.88 -19.87 -0.12 -1.80 16 3 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 4 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 5 C -0.13 -2.49 9.70 22.27 0.22 -2.28 16 6 C -0.09 -1.88 5.13 -19.87 -0.10 -1.98 16 7 C -0.07 -1.39 5.72 29.85 0.17 -1.22 16 8 C 0.09 2.60 5.46 71.98 0.39 2.99 16 9 O -0.37 -12.93 10.27 -55.42 -0.57 -13.50 16 10 C 0.64 28.34 8.75 129.79 1.14 29.48 16 11 O -0.62 -32.20 16.13 19.79 0.32 -31.88 16 12 N -0.68 -30.81 5.55 -594.62 -3.30 -34.12 16 13 C 0.28 15.53 5.43 85.63 0.46 16.00 16 14 C -0.56 -30.18 9.28 25.60 0.24 -29.94 16 15 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 16 C 0.01 0.34 5.46 84.65 0.46 0.80 16 17 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 18 Si 0.99 41.98 29.54 68.60 2.03 44.00 16 19 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 20 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 22 C -0.13 -2.49 9.36 22.27 0.21 -2.29 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 25 H 0.08 0.74 8.09 -2.38 -0.02 0.72 16 26 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 27 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 28 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 29 H 0.09 1.79 8.09 -2.38 -0.02 1.77 16 30 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.41 15.85 8.43 -92.71 -0.78 15.07 16 34 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.13 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -69.25 325.64 3.26 -65.99 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.28 Total: 19.15 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 4.22 Total: 5.43 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -3.02 Total: -89.19 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -0.25 Total: -45.38 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -69.25 3.26 -65.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243680088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.338 kcal (2) G-P(sol) polarization free energy of solvation -69.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds