Wall clock time and date at job start Mon Mar 30 2020 07:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29408 * 119.99654 * 2 1 4 4 O 1.41591 * 120.00303 * 359.97438 * 3 2 1 5 5 C 1.47475 * 119.99704 * 179.97438 * 2 1 3 6 6 C 1.39641 * 120.18736 * 0.02562 * 5 2 1 7 7 C 1.37882 * 119.90332 * 179.97438 * 6 5 2 8 8 C 1.38472 * 120.27884 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.80832 * 179.97438 * 8 7 6 10 10 C 1.38158 * 120.38080 * 359.97438 * 8 7 6 11 11 C 1.38590 * 120.08559 * 0.02562 * 10 8 7 12 12 O 1.35765 * 120.13718 * 180.27028 * 11 10 8 13 13 C 1.42893 * 117.00207 * 359.73151 * 12 11 10 14 14 C 1.52998 * 109.47233 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47303 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99808 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00161 * 179.97438 * 15 14 13 18 18 N 1.31504 * 120.00096 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99783 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47038 * 90.00576 * 19 17 15 21 21 H 1.48500 * 109.47245 * 210.00089 * 19 17 15 22 22 H 1.48502 * 109.47320 * 330.00188 * 19 17 15 23 23 H 1.09000 * 109.47230 * 270.00448 * 1 2 3 24 24 H 1.08996 * 109.47138 * 30.00289 * 1 2 3 25 25 H 1.08999 * 109.46914 * 150.00218 * 1 2 3 26 26 H 0.96705 * 114.00368 * 180.02562 * 4 3 2 27 27 H 1.07995 * 120.04769 * 0.02562 * 6 5 2 28 28 H 1.07991 * 119.85959 * 180.02562 * 7 6 5 29 29 H 1.08994 * 109.47511 * 90.00096 * 9 8 7 30 30 H 1.09005 * 109.46663 * 209.99969 * 9 8 7 31 31 H 1.09002 * 109.46947 * 329.99324 * 9 8 7 32 32 H 1.07996 * 119.95248 * 180.02562 * 10 8 7 33 33 H 1.08999 * 109.46770 * 299.99546 * 13 12 11 34 34 H 1.09003 * 109.47424 * 59.99161 * 13 12 11 35 35 H 1.08999 * 109.46952 * 299.99532 * 14 13 12 36 36 H 1.08999 * 109.47787 * 59.99765 * 14 13 12 37 37 H 0.97007 * 120.00339 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1540 1.1207 0.0000 4 8 1.4460 2.3470 -0.0005 5 6 2.2443 -1.2772 0.0006 6 6 1.5500 -2.4888 0.0006 7 6 2.2453 -3.6795 0.0006 8 6 3.6300 -3.6794 0.0011 9 6 4.3792 -4.9870 0.0017 10 6 4.3287 -2.4875 0.0011 11 6 3.6455 -1.2817 0.0011 12 8 4.3310 -0.1099 -0.0044 13 6 5.7575 -0.1927 -0.0041 14 6 6.3503 1.2177 -0.0114 15 6 7.8548 1.1303 -0.0105 16 1 8.3397 0.1653 -0.0056 17 6 8.6123 2.2824 -0.0169 18 7 8.0220 3.4575 -0.0233 19 14 10.4772 2.1740 -0.0149 20 1 10.9723 2.1370 -1.4146 21 1 11.0413 3.3598 0.6784 22 1 10.9005 0.9390 0.6928 23 1 -0.3634 0.0001 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 2.0144 3.1294 -0.0009 27 1 0.4701 -2.4932 -0.0003 28 1 1.7076 -4.6160 0.0002 29 1 4.5603 -5.3026 -1.0258 30 1 5.3319 -4.8596 0.5159 31 1 3.7874 -5.7446 0.5156 32 1 5.4086 -2.4956 0.0011 33 1 6.0904 -0.7225 0.8884 34 1 6.0905 -0.7311 -0.8915 35 1 6.0174 1.7471 -0.9041 36 1 6.0175 1.7564 0.8758 37 1 8.5549 4.2680 -0.0274 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252453445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:11 Heat of formation + Delta-G solvation = -19.056360 kcal Electronic energy + Delta-G solvation = -19305.586359 eV Core-core repulsion = 16242.679290 eV Total energy + Delta-G solvation = -3062.907068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.00053 -37.39897 -36.87000 -34.34091 -33.33685 -31.58366 -30.61689 -29.38288 -28.06462 -26.94855 -24.97265 -22.49557 -21.85413 -20.74767 -19.47623 -17.34138 -16.70926 -16.17729 -15.81650 -15.43211 -15.36504 -14.56094 -14.47772 -14.14106 -13.97478 -13.62357 -13.37106 -13.09731 -12.39892 -12.37939 -12.30844 -12.16519 -12.02510 -11.43761 -11.30427 -11.27232 -10.85503 -10.77127 -10.52665 -9.86708 -9.74206 -9.64172 -9.47625 -9.25201 -8.47988 -8.42873 -7.69995 -6.08567 -4.12997 0.98524 1.62569 2.60953 3.27886 3.33708 3.36178 3.37924 3.82376 3.94231 4.41827 4.57530 4.87739 4.89707 5.22884 5.27867 5.28783 5.32713 5.49672 5.55293 5.57881 5.66640 5.73444 5.80327 6.02081 6.05049 6.06081 6.16975 6.37679 6.51119 6.61712 6.73149 6.90628 7.09901 7.53914 7.69162 7.82266 8.05044 8.11308 8.26457 8.92703 9.51023 11.02937 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.005306 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.652419 B = 5275.951722 C = 6858.546371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.152 3.848 3 N -0.289 5.289 4 O -0.422 6.422 5 C -0.104 4.104 6 C -0.052 4.052 7 C -0.177 4.177 8 C -0.031 4.031 9 C -0.117 4.117 10 C -0.220 4.220 11 C 0.182 3.818 12 O -0.281 6.281 13 C 0.059 3.941 14 C 0.030 3.970 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.406 0.594 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.167 -13.212 0.041 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 N -0.031 5.031 4 O -0.331 6.331 5 C -0.106 4.106 6 C -0.072 4.072 7 C -0.195 4.195 8 C -0.032 4.032 9 C -0.174 4.174 10 C -0.239 4.239 11 C 0.131 3.869 12 O -0.191 6.191 13 C -0.015 4.015 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.255 0.745 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.821 -12.675 0.044 18.029 hybrid contribution 0.835 0.253 -0.009 0.872 sum -11.986 -12.422 0.036 17.262 Atomic orbital electron populations 1.21198 0.92014 1.03564 1.03183 1.22983 0.93792 0.90994 0.95895 1.77205 1.21947 0.91199 1.12775 1.88246 1.35722 1.13887 1.95247 1.17552 0.89566 0.90766 1.12761 1.20950 0.99509 0.90349 0.96355 1.20693 0.93363 0.97634 1.07824 1.19825 0.93740 0.94727 0.94954 1.20851 1.00134 0.93913 1.02495 1.21220 1.00851 0.91389 1.10456 1.19333 0.90928 0.86285 0.90334 1.86408 1.21878 1.25791 1.84977 1.23399 0.75114 1.03479 0.99480 1.19061 0.94507 0.88257 0.98878 1.20989 0.90518 0.92795 1.52173 0.92456 1.24975 0.98928 0.95259 0.94953 1.69975 1.35608 0.97369 1.49747 0.86509 0.85096 0.77696 0.78203 1.20518 1.21061 1.19781 0.90433 0.90507 0.90772 0.74491 0.85067 0.85859 0.90877 0.91305 0.91413 0.84797 0.93212 0.93219 0.95429 0.95416 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.28 36.01 0.33 -1.37 16 2 C 0.15 2.49 7.11 -79.85 -0.57 1.92 16 3 N -0.29 -5.50 9.97 35.06 0.35 -5.15 16 4 O -0.42 -6.97 13.73 -11.47 -0.16 -7.13 16 5 C -0.10 -1.66 5.88 -104.91 -0.62 -2.27 16 6 C -0.05 -0.63 9.36 -39.19 -0.37 -0.99 16 7 C -0.18 -2.01 9.67 -39.63 -0.38 -2.39 16 8 C -0.03 -0.40 5.88 -104.56 -0.62 -1.01 16 9 C -0.12 -1.11 10.00 36.01 0.36 -0.75 16 10 C -0.22 -3.43 8.67 -39.48 -0.34 -3.77 16 11 C 0.18 3.27 6.70 -38.75 -0.26 3.01 16 12 O -0.28 -5.96 8.01 -19.00 -0.15 -6.11 16 13 C 0.06 1.30 4.68 37.16 0.17 1.47 16 14 C 0.03 0.80 5.34 -27.88 -0.15 0.65 16 15 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 19 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.08 0.97 7.35 -51.93 -0.38 0.59 16 25 H 0.07 0.69 6.48 -51.93 -0.34 0.36 16 26 H 0.41 5.41 9.28 45.56 0.42 5.83 16 27 H 0.13 1.18 6.36 -52.49 -0.33 0.84 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.13 2.05 6.30 -52.49 -0.33 1.72 16 33 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 34 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 316.95 15.07 4.78 4.78 Total: -1.00 -32.84 316.95 -6.56 -39.40 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.25 Total: 2.68 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -2.84 Total: -18.96 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 1.09 Total: -31.00 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.31 Total: -13.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.84 -6.56 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252453445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.344 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds