Wall clock time and date at job start Mon Mar 30 2020 07:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29408 * 119.99654 * 2 1 4 4 O 1.41591 * 120.00303 * 359.97438 * 3 2 1 5 5 C 1.47475 * 119.99704 * 179.97438 * 2 1 3 6 6 C 1.39641 * 120.18736 * 0.02562 * 5 2 1 7 7 C 1.37882 * 119.90332 * 179.97438 * 6 5 2 8 8 C 1.38472 * 120.27884 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.80832 * 179.97438 * 8 7 6 10 10 C 1.38158 * 120.38080 * 359.97438 * 8 7 6 11 11 C 1.38590 * 120.08559 * 0.02562 * 10 8 7 12 12 O 1.35765 * 120.13718 * 180.27028 * 11 10 8 13 13 C 1.42893 * 117.00207 * 359.73151 * 12 11 10 14 14 C 1.52998 * 109.47233 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47303 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99808 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00161 * 179.97438 * 15 14 13 18 18 N 1.31504 * 120.00096 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99783 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47038 * 90.00576 * 19 17 15 21 21 H 1.48500 * 109.47245 * 210.00089 * 19 17 15 22 22 H 1.48502 * 109.47320 * 330.00188 * 19 17 15 23 23 H 1.09000 * 109.47230 * 270.00448 * 1 2 3 24 24 H 1.08996 * 109.47138 * 30.00289 * 1 2 3 25 25 H 1.08999 * 109.46914 * 150.00218 * 1 2 3 26 26 H 0.96705 * 114.00368 * 180.02562 * 4 3 2 27 27 H 1.07995 * 120.04769 * 0.02562 * 6 5 2 28 28 H 1.07991 * 119.85959 * 180.02562 * 7 6 5 29 29 H 1.08994 * 109.47511 * 90.00096 * 9 8 7 30 30 H 1.09005 * 109.46663 * 209.99969 * 9 8 7 31 31 H 1.09002 * 109.46947 * 329.99324 * 9 8 7 32 32 H 1.07996 * 119.95248 * 180.02562 * 10 8 7 33 33 H 1.08999 * 109.46770 * 299.99546 * 13 12 11 34 34 H 1.09003 * 109.47424 * 59.99161 * 13 12 11 35 35 H 1.08999 * 109.46952 * 299.99532 * 14 13 12 36 36 H 1.08999 * 109.47787 * 59.99765 * 14 13 12 37 37 H 0.97007 * 120.00339 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1540 1.1207 0.0000 4 8 1.4460 2.3470 -0.0005 5 6 2.2443 -1.2772 0.0006 6 6 1.5500 -2.4888 0.0006 7 6 2.2453 -3.6795 0.0006 8 6 3.6300 -3.6794 0.0011 9 6 4.3792 -4.9870 0.0017 10 6 4.3287 -2.4875 0.0011 11 6 3.6455 -1.2817 0.0011 12 8 4.3310 -0.1099 -0.0044 13 6 5.7575 -0.1927 -0.0041 14 6 6.3503 1.2177 -0.0114 15 6 7.8548 1.1303 -0.0105 16 1 8.3397 0.1653 -0.0056 17 6 8.6123 2.2824 -0.0169 18 7 8.0220 3.4575 -0.0233 19 14 10.4772 2.1740 -0.0149 20 1 10.9723 2.1370 -1.4146 21 1 11.0413 3.3598 0.6784 22 1 10.9005 0.9390 0.6928 23 1 -0.3634 0.0001 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 2.0144 3.1294 -0.0009 27 1 0.4701 -2.4932 -0.0003 28 1 1.7076 -4.6160 0.0002 29 1 4.5603 -5.3026 -1.0258 30 1 5.3319 -4.8596 0.5159 31 1 3.7874 -5.7446 0.5156 32 1 5.4086 -2.4956 0.0011 33 1 6.0904 -0.7225 0.8884 34 1 6.0905 -0.7311 -0.8915 35 1 6.0174 1.7471 -0.9041 36 1 6.0175 1.7564 0.8758 37 1 8.5549 4.2680 -0.0274 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252453445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:11 Heat of formation + Delta-G solvation = -40.903627 kcal Electronic energy + Delta-G solvation = -19306.533727 eV Core-core repulsion = 16242.679290 eV Total energy + Delta-G solvation = -3063.854437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23383 -38.76731 -38.06904 -35.60837 -35.34631 -32.71917 -32.31740 -30.76459 -29.16079 -27.99861 -26.86204 -23.90728 -23.06708 -22.35721 -20.70909 -18.96524 -18.02823 -17.90804 -17.14169 -16.96005 -16.65976 -16.42429 -15.58121 -15.35709 -15.11527 -14.57319 -14.51955 -14.38243 -14.30529 -13.89063 -13.50269 -13.24023 -12.98494 -12.90168 -12.86948 -12.56446 -12.49019 -12.26566 -12.01893 -11.59337 -11.53767 -11.41401 -10.94888 -10.66854 -10.63099 -9.59343 -8.93063 -8.27315 -6.41535 -0.12028 0.52104 1.39200 1.41913 1.45947 1.52989 2.19530 2.29171 2.52127 2.85395 3.06781 3.48275 3.85348 4.00227 4.17675 4.24507 4.24735 4.33261 4.41981 4.59329 4.61247 4.66447 4.72607 4.85202 4.88440 4.95233 5.10155 5.28628 5.31045 5.34968 5.45814 5.46469 5.63701 5.68855 5.91794 5.94806 6.06841 6.57161 6.73218 6.90708 7.28611 8.85839 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.005306 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.652419 B = 5275.951722 C = 6858.546371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.153 3.847 3 N -0.350 5.350 4 O -0.425 6.425 5 C -0.127 4.127 6 C -0.038 4.038 7 C -0.163 4.163 8 C -0.028 4.028 9 C -0.117 4.117 10 C -0.237 4.237 11 C 0.139 3.861 12 O -0.308 6.308 13 C 0.080 3.920 14 C 0.038 3.962 15 C -0.547 4.547 16 H 0.070 0.930 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.977 3.023 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.259 1.259 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.413 0.587 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.057 0.943 34 H 0.057 0.943 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 -16.807 0.052 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 N -0.095 5.095 4 O -0.335 6.335 5 C -0.129 4.129 6 C -0.057 4.057 7 C -0.181 4.181 8 C -0.029 4.029 9 C -0.173 4.173 10 C -0.256 4.256 11 C 0.091 3.909 12 O -0.219 6.219 13 C 0.006 3.994 14 C 0.001 3.999 15 C -0.585 4.585 16 H 0.088 0.912 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.800 3.200 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.182 1.182 23 H 0.111 0.889 24 H 0.086 0.914 25 H 0.127 0.873 26 H 0.263 0.737 27 H 0.189 0.811 28 H 0.185 0.815 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.144 0.856 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.012 0.988 36 H 0.012 0.988 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.615 -16.293 0.055 21.233 hybrid contribution 0.925 1.231 -0.012 1.540 sum -12.690 -15.062 0.043 19.695 Atomic orbital electron populations 1.21264 0.88832 1.04816 1.04467 1.23586 0.96146 0.90474 0.93326 1.77192 1.23809 0.92463 1.15988 1.88183 1.35884 1.13913 1.95531 1.17968 0.88891 0.92103 1.13969 1.21434 1.01410 0.88910 0.93979 1.21248 0.92859 0.99080 1.04899 1.20277 0.94823 0.94837 0.92990 1.20940 1.00094 0.92649 1.03628 1.21309 1.00745 0.91907 1.11640 1.19786 0.92027 0.85866 0.93262 1.86339 1.20780 1.28280 1.86549 1.22878 0.76490 1.00006 1.00064 1.18845 0.94879 0.90676 0.95550 1.21409 0.91230 0.93615 1.52256 0.91173 1.26051 1.04858 0.94649 0.94079 1.70130 1.37957 0.98332 1.50547 0.85281 0.77815 0.78230 0.78705 1.19486 1.20602 1.18241 0.88912 0.91442 0.87278 0.73733 0.81076 0.81475 0.89610 0.91628 0.88731 0.85589 0.92525 0.92503 0.98824 0.98812 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.28 71.24 0.66 -2.35 16 2 C 0.15 5.01 7.11 45.35 0.32 5.33 16 3 N -0.35 -14.12 9.97 -42.98 -0.43 -14.55 16 4 O -0.43 -15.01 13.73 -38.76 -0.53 -15.54 16 5 C -0.13 -3.94 5.88 -20.05 -0.12 -4.06 16 6 C -0.04 -0.77 9.36 22.52 0.21 -0.56 16 7 C -0.16 -2.93 9.67 22.24 0.22 -2.71 16 8 C -0.03 -0.63 5.88 -19.83 -0.12 -0.75 16 9 C -0.12 -1.77 10.00 71.24 0.71 -1.06 16 10 C -0.24 -7.31 8.67 22.33 0.19 -7.11 16 11 C 0.14 5.14 6.70 22.81 0.15 5.29 16 12 O -0.31 -13.98 8.01 -90.92 -0.73 -14.70 16 13 C 0.08 3.72 4.68 71.98 0.34 4.05 16 14 C 0.04 2.16 5.34 29.85 0.16 2.32 16 15 C -0.55 -31.77 9.11 25.60 0.23 -31.54 16 16 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 17 C 0.00 0.13 5.46 84.66 0.46 0.59 16 18 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 19 Si 0.98 44.21 29.54 68.60 2.03 46.23 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 23 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 1.64 7.35 -2.39 -0.02 1.63 16 25 H 0.11 1.60 6.48 -2.39 -0.02 1.59 16 26 H 0.41 12.29 9.28 -74.05 -0.69 11.60 16 27 H 0.17 2.07 6.36 -2.91 -0.02 2.05 16 28 H 0.17 1.63 8.06 -2.92 -0.02 1.60 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.06 8.08 -2.38 -0.02 1.04 16 31 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 32 H 0.13 3.94 6.30 -2.91 -0.02 3.92 16 33 H 0.06 2.47 7.67 -2.39 -0.02 2.46 16 34 H 0.06 2.48 7.65 -2.39 -0.02 2.46 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -76.42 316.95 4.44 -71.98 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.39 Total: 16.69 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 3.43 Total: -32.55 kcal Atomic # 7 Polarization: -71.96 SS G_CDS: -0.14 Total: -72.10 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.26 Total: -30.25 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -76.42 4.44 -71.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252453445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.077 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds