Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36943 * 120.00268 * 2 1 4 4 H 1.07991 * 120.00121 * 200.38862 * 3 2 1 5 5 C 1.38812 * 119.99414 * 20.38883 * 3 2 1 6 6 N 1.31620 * 120.00638 * 14.97286 * 5 3 2 7 7 Si 1.86805 * 119.99849 * 194.96907 * 5 3 2 8 8 H 1.48505 * 109.46789 * 85.00461 * 7 5 3 9 9 H 1.48501 * 109.47531 * 205.00166 * 7 5 3 10 10 H 1.48504 * 109.47163 * 325.00619 * 7 5 3 11 11 C 1.46498 * 120.00099 * 180.02562 * 2 1 3 12 12 C 1.50695 * 109.47023 * 269.99647 * 11 2 1 13 13 C 1.38349 * 119.99274 * 90.00143 * 12 11 2 14 14 C 1.37736 * 119.51535 * 180.29288 * 13 12 11 15 15 C 1.39629 * 120.62058 * 359.97438 * 14 13 12 16 16 C 1.38173 * 119.98023 * 359.36911 * 15 14 13 17 17 C 1.37763 * 119.99960 * 269.71896 * 12 11 2 18 18 C 1.50041 * 124.75121 * 181.34910 * 16 15 14 19 19 C 1.51876 * 113.55712 * 336.66424 * 18 16 15 20 20 C 1.53516 * 108.98347 * 60.56027 * 19 18 16 21 21 S 1.76460 * 117.72284 * 178.69480 * 15 14 13 22 22 H 1.08998 * 109.46680 * 275.09637 * 1 2 3 23 23 H 1.09001 * 109.46988 * 35.09233 * 1 2 3 24 24 H 1.08994 * 109.47044 * 155.09484 * 1 2 3 25 25 H 0.96995 * 120.00420 * 180.02562 * 6 5 3 26 26 H 1.09007 * 109.47027 * 149.99961 * 11 2 1 27 27 H 1.08998 * 109.46947 * 30.00376 * 11 2 1 28 28 H 1.08005 * 120.24078 * 0.31195 * 13 12 11 29 29 H 1.07996 * 119.68852 * 180.02562 * 14 13 12 30 30 H 1.08000 * 119.47363 * 0.04859 * 17 12 11 31 31 H 1.08998 * 108.66302 * 97.71548 * 18 16 15 32 32 H 1.09002 * 108.66728 * 215.73802 * 18 16 15 33 33 H 1.09000 * 109.55138 * 180.42036 * 19 18 16 34 34 H 1.09001 * 109.54983 * 300.61156 * 19 18 16 35 35 H 1.09000 * 109.88285 * 46.90939 * 20 19 18 36 36 H 1.09000 * 109.88239 * 167.91909 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1789 1.2152 -0.3258 5 6 1.5209 2.3504 0.4188 6 7 0.3878 2.2834 1.0852 7 14 2.2827 4.0127 0.0368 8 1 1.8683 4.4466 -1.3217 9 1 1.8228 5.0097 1.0366 10 1 3.7627 3.9032 0.0914 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4200 13 6 1.5264 -2.5033 2.0718 14 6 1.7630 -2.8907 3.3722 15 6 2.9229 -2.4850 4.0352 16 6 3.8522 -1.6982 3.3821 17 6 3.5995 -1.3116 2.0676 18 6 5.1448 -1.2265 3.9803 19 6 5.1333 -1.1895 5.4986 20 6 4.8767 -2.6064 6.0307 21 16 3.1319 -2.9964 5.7111 22 1 -0.3632 0.0913 1.0236 23 1 -0.3633 0.8409 -0.5908 24 1 -0.3633 -0.9321 -0.4327 25 1 -0.0518 3.0971 1.3776 26 1 3.1500 -1.1381 -0.5144 27 1 1.6085 -2.0281 -0.5148 28 1 0.6275 -2.8213 1.5644 29 1 1.0451 -3.5148 3.8835 30 1 4.3155 -0.6910 1.5493 31 1 5.9438 -1.8921 3.6536 32 1 5.3548 -0.2229 3.6103 33 1 6.0968 -0.8321 5.8621 34 1 4.3435 -0.5209 5.8412 35 1 5.5171 -3.3192 5.5112 36 1 5.0755 -2.6418 7.1018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258827087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = 36.682328 kcal Electronic energy + Delta-G solvation = -17603.373075 eV Core-core repulsion = 14985.635889 eV Total energy + Delta-G solvation = -2617.737187 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.05453 -36.03545 -34.90865 -31.87766 -30.63683 -29.98986 -26.77291 -26.09372 -25.59067 -22.63533 -22.11854 -20.95322 -19.52896 -17.24137 -16.69669 -15.37419 -15.30345 -15.15281 -14.62340 -14.01883 -13.69184 -13.44381 -13.39688 -13.10877 -12.84522 -12.43098 -12.31058 -11.70656 -11.50092 -11.32347 -11.13723 -10.88568 -10.77964 -10.63572 -10.47556 -10.19506 -10.00211 -9.95979 -9.74924 -8.99290 -8.57064 -8.19566 -7.05789 -6.79298 -5.75162 -3.17130 1.71237 1.85989 1.91841 2.62575 3.36655 3.42542 3.43956 4.18512 4.50823 4.67968 4.76692 4.94546 5.26315 5.35549 5.38572 5.47975 5.52927 5.65443 5.71362 5.79417 5.88773 6.01002 6.03096 6.11781 6.21719 6.40206 6.58074 6.64665 6.73244 6.78943 6.94634 7.34907 7.36244 7.51484 7.71357 7.78934 8.35231 9.19695 9.82976 10.31277 11.29458 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.006036 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.692454 B = 4637.381915 C = 5258.042446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.589 5.589 3 C -0.253 4.253 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.902 5.902 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.179 3.821 12 C -0.073 4.073 13 C -0.101 4.101 14 C -0.102 4.102 15 C -0.092 4.092 16 C -0.084 4.084 17 C -0.093 4.093 18 C -0.083 4.083 19 C -0.122 4.122 20 C -0.100 4.100 21 S -0.150 6.150 22 H 0.030 0.970 23 H 0.045 0.955 24 H -0.001 1.001 25 H 0.253 0.747 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.572 -9.988 6.305 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.310 5.310 3 C -0.382 4.382 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.546 5.546 7 Si 0.734 3.266 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.052 3.948 12 C -0.079 4.079 13 C -0.121 4.121 14 C -0.125 4.125 15 C -0.204 4.204 16 C -0.089 4.089 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.160 4.160 20 C -0.248 4.248 21 S 0.091 5.909 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.018 0.982 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.703 -10.316 7.180 14.244 hybrid contribution 1.096 1.649 -0.771 2.124 sum 7.799 -8.668 6.409 13.305 Atomic orbital electron populations 1.20833 0.82243 0.95599 0.99576 1.44162 1.02006 1.00286 1.84555 1.19212 0.97250 0.84675 1.37100 0.91217 1.25010 0.97885 0.98443 0.98285 1.70088 1.18660 1.26905 1.38945 0.86284 0.78652 0.84014 0.77660 1.21358 1.21742 1.20550 1.19989 0.96605 0.88644 0.89523 1.21095 0.92684 0.93268 1.00847 1.20833 0.98941 0.98330 0.94032 1.20713 0.95920 1.01028 0.94798 1.20954 0.99167 1.04232 0.96096 1.19454 0.95895 0.98423 0.95156 1.21000 0.97857 0.99173 0.93319 1.20200 0.94837 1.02337 0.94685 1.21606 1.03263 0.95295 0.95862 1.23676 0.95908 1.00444 1.04789 1.85245 1.13730 1.80597 1.11372 0.95185 0.93643 0.98241 0.93665 0.92842 0.93296 0.86321 0.86584 0.86432 0.91006 0.89992 0.90337 0.90243 0.89496 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 9.02 59.85 0.54 4.54 16 2 N -0.59 -14.74 2.91 -182.51 -0.53 -15.27 16 3 C -0.25 -6.87 9.68 -15.06 -0.15 -7.01 16 4 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 5 C 0.00 0.07 5.06 -17.43 -0.09 -0.01 16 6 N -0.90 -26.47 10.67 55.49 0.59 -25.87 16 7 Si 0.90 21.83 29.58 -169.99 -5.03 16.80 16 8 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C 0.18 3.69 5.83 -5.20 -0.03 3.66 16 12 C -0.07 -1.46 5.45 -104.76 -0.57 -2.03 16 13 C -0.10 -1.87 9.72 -39.72 -0.39 -2.26 16 14 C -0.10 -1.80 9.65 -39.25 -0.38 -2.18 16 15 C -0.09 -1.61 6.05 -39.09 -0.24 -1.84 16 16 C -0.08 -1.46 5.77 -104.56 -0.60 -2.06 16 17 C -0.09 -1.78 9.13 -39.35 -0.36 -2.14 16 18 C -0.08 -1.15 5.28 -28.77 -0.15 -1.30 16 19 C -0.12 -1.44 5.83 -27.03 -0.16 -1.60 16 20 C -0.10 -1.12 6.52 37.43 0.24 -0.88 16 21 S -0.15 -2.20 21.99 -107.50 -2.36 -4.57 16 22 H 0.03 0.81 7.40 -51.93 -0.38 0.43 16 23 H 0.04 1.20 7.21 -51.93 -0.37 0.82 16 24 H 0.00 -0.02 7.83 -51.93 -0.41 -0.43 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.05 1.05 7.97 -51.93 -0.41 0.64 16 27 H 0.05 0.90 7.80 -51.93 -0.41 0.50 16 28 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 29 H 0.12 1.83 8.05 -52.49 -0.42 1.41 16 30 H 0.12 2.20 8.01 -52.49 -0.42 1.78 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.14 8.01 -51.93 -0.42 0.73 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 35 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -30.23 306.54 -10.36 -40.59 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.32 Total: -1.18 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -2.33 Total: -15.12 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.06 Total: -41.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -2.36 Total: -4.57 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.23 -10.36 -40.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258827087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.273 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds