Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36943 * 120.00268 * 2 1 4 4 H 1.07991 * 120.00121 * 200.38862 * 3 2 1 5 5 C 1.38812 * 119.99414 * 20.38883 * 3 2 1 6 6 N 1.31620 * 120.00638 * 14.97286 * 5 3 2 7 7 Si 1.86805 * 119.99849 * 194.96907 * 5 3 2 8 8 H 1.48505 * 109.46789 * 85.00461 * 7 5 3 9 9 H 1.48501 * 109.47531 * 205.00166 * 7 5 3 10 10 H 1.48504 * 109.47163 * 325.00619 * 7 5 3 11 11 C 1.46498 * 120.00099 * 180.02562 * 2 1 3 12 12 C 1.50695 * 109.47023 * 269.99647 * 11 2 1 13 13 C 1.38349 * 119.99274 * 90.00143 * 12 11 2 14 14 C 1.37736 * 119.51535 * 180.29288 * 13 12 11 15 15 C 1.39629 * 120.62058 * 359.97438 * 14 13 12 16 16 C 1.38173 * 119.98023 * 359.36911 * 15 14 13 17 17 C 1.37763 * 119.99960 * 269.71896 * 12 11 2 18 18 C 1.50041 * 124.75121 * 181.34910 * 16 15 14 19 19 C 1.51876 * 113.55712 * 336.66424 * 18 16 15 20 20 C 1.53516 * 108.98347 * 60.56027 * 19 18 16 21 21 S 1.76460 * 117.72284 * 178.69480 * 15 14 13 22 22 H 1.08998 * 109.46680 * 275.09637 * 1 2 3 23 23 H 1.09001 * 109.46988 * 35.09233 * 1 2 3 24 24 H 1.08994 * 109.47044 * 155.09484 * 1 2 3 25 25 H 0.96995 * 120.00420 * 180.02562 * 6 5 3 26 26 H 1.09007 * 109.47027 * 149.99961 * 11 2 1 27 27 H 1.08998 * 109.46947 * 30.00376 * 11 2 1 28 28 H 1.08005 * 120.24078 * 0.31195 * 13 12 11 29 29 H 1.07996 * 119.68852 * 180.02562 * 14 13 12 30 30 H 1.08000 * 119.47363 * 0.04859 * 17 12 11 31 31 H 1.08998 * 108.66302 * 97.71548 * 18 16 15 32 32 H 1.09002 * 108.66728 * 215.73802 * 18 16 15 33 33 H 1.09000 * 109.55138 * 180.42036 * 19 18 16 34 34 H 1.09001 * 109.54983 * 300.61156 * 19 18 16 35 35 H 1.09000 * 109.88285 * 46.90939 * 20 19 18 36 36 H 1.09000 * 109.88239 * 167.91909 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1789 1.2152 -0.3258 5 6 1.5209 2.3504 0.4188 6 7 0.3878 2.2834 1.0852 7 14 2.2827 4.0127 0.0368 8 1 1.8683 4.4466 -1.3217 9 1 1.8228 5.0097 1.0366 10 1 3.7627 3.9032 0.0914 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4200 13 6 1.5264 -2.5033 2.0718 14 6 1.7630 -2.8907 3.3722 15 6 2.9229 -2.4850 4.0352 16 6 3.8522 -1.6982 3.3821 17 6 3.5995 -1.3116 2.0676 18 6 5.1448 -1.2265 3.9803 19 6 5.1333 -1.1895 5.4986 20 6 4.8767 -2.6064 6.0307 21 16 3.1319 -2.9964 5.7111 22 1 -0.3632 0.0913 1.0236 23 1 -0.3633 0.8409 -0.5908 24 1 -0.3633 -0.9321 -0.4327 25 1 -0.0518 3.0971 1.3776 26 1 3.1500 -1.1381 -0.5144 27 1 1.6085 -2.0281 -0.5148 28 1 0.6275 -2.8213 1.5644 29 1 1.0451 -3.5148 3.8835 30 1 4.3155 -0.6910 1.5493 31 1 5.9438 -1.8921 3.6536 32 1 5.3548 -0.2229 3.6103 33 1 6.0968 -0.8321 5.8621 34 1 4.3435 -0.5209 5.8412 35 1 5.5171 -3.3192 5.5112 36 1 5.0755 -2.6418 7.1018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258827087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = 21.736996 kcal Electronic energy + Delta-G solvation = -17604.021154 eV Core-core repulsion = 14985.635889 eV Total energy + Delta-G solvation = -2618.385265 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43551 -37.63269 -36.29227 -33.68396 -31.95598 -31.63052 -28.10875 -27.76163 -27.40220 -23.85949 -23.77042 -22.46915 -20.89431 -18.74880 -18.44039 -16.94222 -16.67227 -16.40919 -16.20215 -15.53395 -15.36351 -14.89185 -14.64570 -14.46026 -14.40348 -13.77249 -13.60064 -13.33475 -13.11843 -12.82579 -12.59028 -12.55130 -12.33826 -12.20744 -12.08773 -12.01381 -11.79905 -11.48946 -10.94591 -10.64030 -10.35950 -9.58164 -8.85479 -8.25154 -7.83255 -5.28281 0.34805 0.49458 0.70324 1.44754 1.46614 1.50081 1.54196 2.49289 2.78362 3.31840 3.66306 3.80957 3.84991 3.88141 4.02134 4.17929 4.35430 4.44758 4.48164 4.59102 4.60964 4.74805 4.80529 4.84068 4.94431 4.95786 5.08931 5.15561 5.23709 5.30259 5.40284 5.53073 5.61860 5.71512 5.87038 6.09740 6.30678 7.13445 7.85155 8.28658 9.20246 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.006036 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.692454 B = 4637.381915 C = 5258.042446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.606 5.606 3 C -0.255 4.255 4 H 0.074 0.926 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.965 3.035 8 H -0.284 1.284 9 H -0.299 1.299 10 H -0.268 1.268 11 C 0.180 3.820 12 C -0.094 4.094 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.102 4.102 16 C -0.091 4.091 17 C -0.109 4.109 18 C -0.086 4.086 19 C -0.118 4.118 20 C -0.090 4.090 21 S -0.161 6.161 22 H -0.001 1.001 23 H 0.018 0.982 24 H 0.034 0.966 25 H 0.246 0.754 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.577 -10.904 7.342 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.328 5.328 3 C -0.385 4.385 4 H 0.092 0.908 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.793 3.207 8 H -0.211 1.211 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.054 3.946 12 C -0.099 4.099 13 C -0.131 4.131 14 C -0.134 4.134 15 C -0.214 4.214 16 C -0.097 4.097 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.157 4.157 20 C -0.238 4.238 21 S 0.079 5.921 22 H 0.017 0.983 23 H 0.037 0.963 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.132 0.868 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.743 -11.276 8.216 16.464 hybrid contribution 0.558 1.774 -1.024 2.123 sum 9.301 -9.502 7.191 15.116 Atomic orbital electron populations 1.20550 0.82595 0.96138 0.97452 1.44309 1.02129 1.01302 1.85026 1.19523 0.97333 0.85797 1.35845 0.90840 1.25741 0.98630 1.01661 0.98873 1.70266 1.20282 1.27024 1.40868 0.85311 0.78421 0.79880 0.77041 1.21056 1.22549 1.19232 1.20083 0.96734 0.87326 0.90443 1.21023 0.93784 0.94831 1.00269 1.21008 0.99069 0.98370 0.94681 1.21000 0.96561 1.01119 0.94708 1.21305 0.98839 1.03516 0.97741 1.19875 0.97374 0.97820 0.94616 1.21162 0.97899 0.99509 0.94429 1.20296 0.93422 1.02375 0.96186 1.21596 1.04462 0.95401 0.94193 1.23860 0.92913 1.00239 1.06801 1.85266 1.17561 1.80219 1.09029 0.98277 0.96298 0.94778 0.94471 0.92252 0.91179 0.85299 0.85017 0.86769 0.88805 0.90477 0.86844 0.92205 0.87983 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.92 9.02 127.77 1.15 10.08 16 2 N -0.61 -30.49 2.91 -731.33 -2.13 -32.62 16 3 C -0.25 -13.94 9.68 84.03 0.81 -13.13 16 4 H 0.07 3.87 7.86 -2.92 -0.02 3.85 16 5 C -0.05 -3.06 5.06 84.86 0.43 -2.63 16 6 N -0.94 -56.66 10.67 21.65 0.23 -56.43 16 7 Si 0.96 45.43 29.58 68.60 2.03 47.46 16 8 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 9 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 C 0.18 7.31 5.83 85.63 0.50 7.81 16 12 C -0.09 -3.73 5.45 -19.95 -0.11 -3.84 16 13 C -0.11 -4.09 9.72 22.18 0.22 -3.88 16 14 C -0.11 -3.86 9.65 22.49 0.22 -3.65 16 15 C -0.10 -3.44 6.05 22.59 0.14 -3.30 16 16 C -0.09 -3.08 5.77 -19.82 -0.11 -3.19 16 17 C -0.11 -4.17 9.13 22.42 0.20 -3.97 16 18 C -0.09 -2.17 5.28 29.27 0.15 -2.02 16 19 C -0.12 -2.40 5.83 30.40 0.18 -2.23 16 20 C -0.09 -1.68 6.52 72.16 0.47 -1.21 16 21 S -0.16 -4.40 21.99 -56.49 -1.24 -5.64 16 22 H 0.00 -0.06 7.40 -2.39 -0.02 -0.08 16 23 H 0.02 1.01 7.21 -2.39 -0.02 0.99 16 24 H 0.03 1.43 7.83 -2.39 -0.02 1.41 16 25 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.06 2.30 7.97 -2.38 -0.02 2.28 16 27 H 0.07 2.50 7.80 -2.39 -0.02 2.48 16 28 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.13 4.04 8.05 -2.91 -0.02 4.01 16 30 H 0.11 4.30 8.01 -2.91 -0.02 4.28 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.03 8.01 -2.39 -0.02 2.01 16 33 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.48 8.04 -2.39 -0.02 1.46 16 35 H 0.10 1.68 8.08 -2.39 -0.02 1.66 16 36 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -66.04 306.54 4.19 -61.85 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.05 Total: 10.53 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 4.25 Total: -25.16 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -1.90 Total: -89.05 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: -4.40 SS G_CDS: -1.24 Total: -5.64 kcal Total: -66.04 4.19 -61.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258827087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.592 kcal (2) G-P(sol) polarization free energy of solvation -66.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds