Wall clock time and date at job start Mon Mar 30 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00062 * 2 1 4 4 H 1.08999 * 109.47313 * 323.57563 * 3 2 1 5 5 C 1.50701 * 109.47193 * 203.56960 * 3 2 1 6 6 H 1.07992 * 120.00165 * 239.99886 * 5 3 2 7 7 C 1.37881 * 119.99527 * 60.00838 * 5 3 2 8 8 N 1.31506 * 120.00118 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99548 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47059 * 59.99852 * 9 7 5 11 11 H 1.48504 * 109.46846 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47148 * 299.99328 * 9 7 5 13 13 C 1.50706 * 109.46853 * 83.57362 * 3 2 1 14 14 C 1.38346 * 119.99232 * 46.35487 * 13 3 2 15 15 C 1.37739 * 119.50677 * 180.28543 * 14 13 3 16 16 C 1.39629 * 120.63117 * 359.69362 * 15 14 13 17 17 C 1.38177 * 119.97385 * 359.82778 * 16 15 14 18 18 C 1.37760 * 119.99633 * 226.08051 * 13 3 2 19 19 C 1.50039 * 124.76435 * 181.13613 * 17 16 15 20 20 C 1.51879 * 113.56625 * 337.01037 * 19 17 16 21 21 C 1.53532 * 108.96396 * 60.49410 * 20 19 17 22 22 S 1.76459 * 117.72555 * 179.40212 * 16 15 14 23 23 H 1.08999 * 109.47436 * 304.63022 * 1 2 3 24 24 H 1.09007 * 109.46820 * 64.63150 * 1 2 3 25 25 H 1.08998 * 109.47050 * 184.62741 * 1 2 3 26 26 H 1.00907 * 110.99965 * 123.95574 * 2 1 3 27 27 H 0.97006 * 120.00231 * 180.02562 * 8 7 5 28 28 H 1.07995 * 120.24711 * 0.26724 * 14 13 3 29 29 H 1.08004 * 119.68524 * 179.72028 * 15 14 13 30 30 H 1.08002 * 119.46924 * 0.14955 * 18 13 3 31 31 H 1.08999 * 108.66953 * 215.94712 * 19 17 16 32 32 H 1.09001 * 108.55735 * 97.98681 * 19 17 16 33 33 H 1.09008 * 109.55171 * 300.65632 * 20 19 17 34 34 H 1.08998 * 109.64188 * 180.39709 * 20 19 17 35 35 H 1.08996 * 109.88932 * 167.93179 * 21 20 19 36 36 H 1.09007 * 109.94580 * 46.87167 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3537 2.0070 -0.6102 5 6 3.3913 1.3737 -0.5681 6 1 4.2184 1.7213 0.0330 7 6 3.6122 0.9322 -1.8555 8 7 2.6050 0.5087 -2.5874 9 14 5.3423 0.9357 -2.5600 10 1 6.2169 0.0702 -1.7288 11 1 5.3113 0.4169 -3.9511 12 1 5.8739 2.3222 -2.5602 13 6 2.0270 1.8974 1.4120 14 6 2.5376 1.1131 2.4308 15 6 2.5562 1.6014 3.7186 16 6 2.0712 2.8798 4.0017 17 6 1.5698 3.6690 2.9843 18 6 1.5526 3.1611 1.6870 19 6 1.0455 5.0634 3.1624 20 6 0.5907 5.3648 4.5798 21 6 1.7839 5.2012 5.5320 22 16 2.1169 3.4221 5.6803 23 1 -0.3634 0.5840 0.8456 24 1 -0.3633 0.4403 -0.9286 25 1 -0.3633 -1.0243 0.0829 26 1 1.8306 -0.5262 0.7814 27 1 2.7605 0.1977 -3.4930 28 1 2.9185 0.1252 2.2181 29 1 2.9500 0.9898 4.5170 30 1 1.1577 3.7667 0.8846 31 1 0.2021 5.2079 2.4872 32 1 1.8326 5.7672 2.8915 33 1 -0.2007 4.6712 4.8642 34 1 0.2172 6.3872 4.6351 35 1 1.5375 5.6151 6.5098 36 1 2.6577 5.7093 5.1240 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259183057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:29 Heat of formation + Delta-G solvation = 17.930649 kcal Electronic energy + Delta-G solvation = -17545.817225 eV Core-core repulsion = 14927.266905 eV Total energy + Delta-G solvation = -2618.550320 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.19841 -36.19456 -34.56666 -32.01906 -30.75812 -30.33641 -26.92123 -26.81486 -23.81073 -23.13360 -22.06735 -21.31480 -19.28323 -17.30186 -16.53569 -15.46110 -15.36752 -15.21123 -14.38043 -14.12455 -13.69794 -13.61427 -13.40949 -13.02906 -12.70966 -12.46539 -12.33176 -11.91115 -11.68387 -11.44718 -11.30627 -10.97328 -10.92905 -10.82509 -10.52926 -10.31895 -9.92390 -9.75598 -9.36188 -8.77455 -8.40053 -8.26567 -7.07208 -6.89216 -5.87920 -4.01580 1.66787 1.81566 1.87355 2.55926 3.36162 3.40657 3.43724 4.19085 4.50533 4.59644 4.69413 4.85509 5.20194 5.29128 5.31599 5.42421 5.49267 5.59145 5.78522 5.85129 5.88477 5.99683 6.03058 6.07305 6.30649 6.35558 6.43508 6.47036 6.75051 6.79439 6.98639 7.01637 7.43252 7.49418 7.92632 8.19452 8.58488 8.76764 9.11622 9.66373 11.16683 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026688 B = 0.005360 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.903941 B = 5222.953130 C = 5449.275199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.650 5.650 3 C 0.252 3.748 4 H 0.044 0.956 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.086 3.914 8 N -0.850 5.850 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 C -0.061 4.061 14 C -0.103 4.103 15 C -0.101 4.101 16 C -0.097 4.097 17 C -0.084 4.084 18 C -0.114 4.114 19 C -0.084 4.084 20 C -0.120 4.120 21 C -0.101 4.101 22 S -0.150 6.150 23 H -0.005 1.005 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.313 0.687 27 H 0.256 0.744 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 7.312 12.982 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.279 5.279 3 C 0.144 3.856 4 H 0.062 0.938 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.120 4.120 8 N -0.485 5.485 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.205 1.205 13 C -0.065 4.065 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.209 4.209 17 C -0.090 4.090 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.159 4.159 21 C -0.249 4.249 22 S 0.090 5.910 23 H 0.014 0.986 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.131 0.869 27 H 0.066 0.934 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.901 6.603 13.171 15.241 hybrid contribution 0.612 0.900 -0.690 1.289 sum -3.288 7.503 12.481 14.929 Atomic orbital electron populations 1.22094 0.91631 0.98885 0.98879 1.61004 1.03765 1.15897 1.47208 1.18389 0.96767 0.85814 0.84610 0.93834 1.20794 0.91710 1.45468 0.98306 0.92805 1.24903 0.96134 0.94222 0.96783 1.70052 1.30026 1.39877 1.08533 0.86803 0.85549 0.78243 0.78096 1.20276 1.21362 1.20457 1.21513 0.92173 0.93420 0.99393 1.20915 0.99333 1.00533 0.91536 1.20785 1.00419 0.94074 0.97057 1.20966 1.06894 0.98282 0.94745 1.19468 1.00583 0.95507 0.93419 1.21153 1.01361 0.96262 0.94707 1.20208 1.01229 0.93653 0.97017 1.21602 0.97009 1.02752 0.94495 1.23687 1.01923 0.95432 1.03886 1.85241 1.91188 1.07522 1.07047 0.98639 0.92486 0.93876 0.86908 0.93365 0.85490 0.86474 0.86449 0.90196 0.90759 0.90449 0.90308 0.87662 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.49 60.06 0.63 1.36 16 2 N -0.65 -15.11 5.89 -116.49 -0.69 -15.80 16 3 C 0.25 6.10 2.08 -70.01 -0.15 5.95 16 4 H 0.04 1.16 7.66 -51.93 -0.40 0.76 16 5 C -0.52 -14.13 8.67 -34.44 -0.30 -14.42 16 6 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.09 2.37 5.39 -17.82 -0.10 2.27 16 8 N -0.85 -24.23 12.77 55.43 0.71 -23.52 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C -0.06 -1.28 4.51 -104.75 -0.47 -1.75 16 14 C -0.10 -1.99 8.97 -39.72 -0.36 -2.34 16 15 C -0.10 -1.76 9.65 -39.25 -0.38 -2.14 16 16 C -0.10 -1.63 6.05 -39.08 -0.24 -1.87 16 17 C -0.08 -1.40 5.77 -104.56 -0.60 -2.00 16 18 C -0.11 -2.17 9.11 -39.35 -0.36 -2.53 16 19 C -0.08 -1.07 5.28 -28.77 -0.15 -1.22 16 20 C -0.12 -1.25 5.84 -27.02 -0.16 -1.41 16 21 C -0.10 -1.07 6.52 37.43 0.24 -0.83 16 22 S -0.15 -2.10 21.99 -107.50 -2.36 -4.46 16 23 H 0.00 -0.09 7.87 -51.93 -0.41 -0.50 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.31 6.80 6.79 -39.29 -0.27 6.53 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.13 2.38 6.90 -52.49 -0.36 2.02 16 29 H 0.12 1.82 8.05 -52.48 -0.42 1.40 16 30 H 0.12 2.13 7.92 -52.49 -0.42 1.72 16 31 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.87 8.03 -51.92 -0.42 0.45 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.92 8.08 -51.92 -0.42 0.50 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -29.03 305.90 -10.32 -39.35 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.18 Total: 4.61 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -2.38 Total: -20.94 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.02 Total: -39.32 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.36 Total: -4.46 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.03 -10.32 -39.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259183057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.280 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds