Wall clock time and date at job start Mon Mar 30 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00062 * 2 1 4 4 H 1.08999 * 109.47313 * 323.57563 * 3 2 1 5 5 C 1.50701 * 109.47193 * 203.56960 * 3 2 1 6 6 H 1.07992 * 120.00165 * 239.99886 * 5 3 2 7 7 C 1.37881 * 119.99527 * 60.00838 * 5 3 2 8 8 N 1.31506 * 120.00118 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99548 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47059 * 59.99852 * 9 7 5 11 11 H 1.48504 * 109.46846 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47148 * 299.99328 * 9 7 5 13 13 C 1.50706 * 109.46853 * 83.57362 * 3 2 1 14 14 C 1.38346 * 119.99232 * 46.35487 * 13 3 2 15 15 C 1.37739 * 119.50677 * 180.28543 * 14 13 3 16 16 C 1.39629 * 120.63117 * 359.69362 * 15 14 13 17 17 C 1.38177 * 119.97385 * 359.82778 * 16 15 14 18 18 C 1.37760 * 119.99633 * 226.08051 * 13 3 2 19 19 C 1.50039 * 124.76435 * 181.13613 * 17 16 15 20 20 C 1.51879 * 113.56625 * 337.01037 * 19 17 16 21 21 C 1.53532 * 108.96396 * 60.49410 * 20 19 17 22 22 S 1.76459 * 117.72555 * 179.40212 * 16 15 14 23 23 H 1.08999 * 109.47436 * 304.63022 * 1 2 3 24 24 H 1.09007 * 109.46820 * 64.63150 * 1 2 3 25 25 H 1.08998 * 109.47050 * 184.62741 * 1 2 3 26 26 H 1.00907 * 110.99965 * 123.95574 * 2 1 3 27 27 H 0.97006 * 120.00231 * 180.02562 * 8 7 5 28 28 H 1.07995 * 120.24711 * 0.26724 * 14 13 3 29 29 H 1.08004 * 119.68524 * 179.72028 * 15 14 13 30 30 H 1.08002 * 119.46924 * 0.14955 * 18 13 3 31 31 H 1.08999 * 108.66953 * 215.94712 * 19 17 16 32 32 H 1.09001 * 108.55735 * 97.98681 * 19 17 16 33 33 H 1.09008 * 109.55171 * 300.65632 * 20 19 17 34 34 H 1.08998 * 109.64188 * 180.39709 * 20 19 17 35 35 H 1.08996 * 109.88932 * 167.93179 * 21 20 19 36 36 H 1.09007 * 109.94580 * 46.87167 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3537 2.0070 -0.6102 5 6 3.3913 1.3737 -0.5681 6 1 4.2184 1.7213 0.0330 7 6 3.6122 0.9322 -1.8555 8 7 2.6050 0.5087 -2.5874 9 14 5.3423 0.9357 -2.5600 10 1 6.2169 0.0702 -1.7288 11 1 5.3113 0.4169 -3.9511 12 1 5.8739 2.3222 -2.5602 13 6 2.0270 1.8974 1.4120 14 6 2.5376 1.1131 2.4308 15 6 2.5562 1.6014 3.7186 16 6 2.0712 2.8798 4.0017 17 6 1.5698 3.6690 2.9843 18 6 1.5526 3.1611 1.6870 19 6 1.0455 5.0634 3.1624 20 6 0.5907 5.3648 4.5798 21 6 1.7839 5.2012 5.5320 22 16 2.1169 3.4221 5.6803 23 1 -0.3634 0.5840 0.8456 24 1 -0.3633 0.4403 -0.9286 25 1 -0.3633 -1.0243 0.0829 26 1 1.8306 -0.5262 0.7814 27 1 2.7605 0.1977 -3.4930 28 1 2.9185 0.1252 2.2181 29 1 2.9500 0.9898 4.5170 30 1 1.1577 3.7667 0.8846 31 1 0.2021 5.2079 2.4872 32 1 1.8326 5.7672 2.8915 33 1 -0.2007 4.6712 4.8642 34 1 0.2172 6.3872 4.6351 35 1 1.5375 5.6151 6.5098 36 1 2.6577 5.7093 5.1240 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259183057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:29 Heat of formation + Delta-G solvation = 1.783903 kcal Electronic energy + Delta-G solvation = -17546.517401 eV Core-core repulsion = 14927.266905 eV Total energy + Delta-G solvation = -2619.250496 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60579 -37.62791 -35.91291 -34.06337 -32.15534 -31.69790 -28.74927 -27.87779 -25.69632 -24.51739 -23.49415 -22.64268 -20.71373 -18.60009 -18.47738 -16.95179 -16.63856 -16.45442 -16.23088 -15.44266 -15.18427 -14.88206 -14.63626 -14.46206 -14.18155 -13.93251 -13.64852 -13.53675 -13.19881 -12.90290 -12.79351 -12.53593 -12.51624 -12.27323 -12.12060 -11.83822 -11.36820 -11.32445 -10.92333 -10.51275 -10.26529 -9.64416 -8.72997 -8.25630 -7.94616 -6.16560 0.32910 0.42938 0.69734 1.44414 1.45526 1.48733 1.52645 2.46957 2.78642 3.24730 3.65610 3.81972 3.83819 4.00255 4.07775 4.20324 4.36921 4.44926 4.53756 4.59894 4.62162 4.69655 4.76431 4.82532 4.93934 4.99031 5.03116 5.10171 5.16981 5.26765 5.37099 5.52460 5.76456 5.86306 6.01848 6.22682 6.62690 6.96679 7.14894 7.54801 9.06857 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026688 B = 0.005360 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.903941 B = 5222.953130 C = 5449.275199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.669 5.669 3 C 0.260 3.740 4 H 0.009 0.991 5 C -0.537 4.537 6 H 0.044 0.956 7 C 0.040 3.960 8 N -0.881 5.881 9 Si 0.946 3.054 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.275 1.275 13 C -0.085 4.085 14 C -0.114 4.114 15 C -0.103 4.103 16 C -0.104 4.104 17 C -0.082 4.082 18 C -0.129 4.129 19 C -0.087 4.087 20 C -0.114 4.114 21 C -0.095 4.095 22 S -0.153 6.153 23 H 0.004 0.996 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.320 0.680 27 H 0.256 0.744 28 H 0.123 0.877 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.136 0.864 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 8.819 15.139 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.298 5.298 3 C 0.152 3.848 4 H 0.027 0.973 5 C -0.575 4.575 6 H 0.062 0.938 7 C -0.164 4.164 8 N -0.516 5.516 9 Si 0.772 3.228 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 C -0.089 4.089 14 C -0.134 4.134 15 C -0.125 4.125 16 C -0.216 4.216 17 C -0.087 4.087 18 C -0.149 4.149 19 C -0.124 4.124 20 C -0.152 4.152 21 C -0.243 4.243 22 S 0.087 5.913 23 H 0.023 0.977 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.139 0.861 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.806 8.115 15.346 17.772 hybrid contribution 0.543 0.517 -1.239 1.448 sum -3.263 8.632 14.107 16.858 Atomic orbital electron populations 1.21998 0.90037 1.00260 0.98257 1.60810 1.05436 1.15672 1.47909 1.18008 0.94677 0.85887 0.86217 0.97328 1.21085 0.92881 1.45007 0.98562 0.93807 1.25596 0.99565 0.94044 0.97169 1.70174 1.31781 1.41016 1.08674 0.85844 0.81336 0.78264 0.77385 1.19962 1.20958 1.20038 1.21189 0.94964 0.94828 0.97952 1.20878 0.99993 1.00399 0.92160 1.21006 1.00053 0.94813 0.96646 1.21317 1.05434 0.98007 0.96848 1.19865 0.99436 0.97293 0.92143 1.21253 1.01806 0.95723 0.96104 1.20327 1.01737 0.91123 0.99233 1.21596 0.96600 1.04635 0.92390 1.23900 1.02317 0.92354 1.05760 1.85256 1.90921 1.10967 1.04125 0.97739 0.94269 0.91604 0.86139 0.93548 0.85895 0.84670 0.86739 0.89441 0.89784 0.91067 0.86800 0.84557 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.86 10.49 127.69 1.34 3.20 16 2 N -0.67 -32.07 5.89 -522.46 -3.08 -35.15 16 3 C 0.26 13.14 2.08 43.42 0.09 13.23 16 4 H 0.01 0.49 7.66 -2.39 -0.02 0.47 16 5 C -0.54 -29.87 8.67 25.60 0.22 -29.65 16 6 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 7 C 0.04 2.23 5.39 84.66 0.46 2.69 16 8 N -0.88 -51.54 12.77 21.45 0.27 -51.26 16 9 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 13 C -0.09 -3.68 4.51 -19.95 -0.09 -3.77 16 14 C -0.11 -4.48 8.97 22.18 0.20 -4.28 16 15 C -0.10 -3.52 9.65 22.49 0.22 -3.30 16 16 C -0.10 -3.35 6.05 22.59 0.14 -3.21 16 17 C -0.08 -2.62 5.77 -19.82 -0.11 -2.73 16 18 C -0.13 -4.95 9.11 22.42 0.20 -4.75 16 19 C -0.09 -2.00 5.28 29.27 0.15 -1.84 16 20 C -0.11 -1.91 5.84 30.40 0.18 -1.73 16 21 C -0.10 -1.62 6.52 72.16 0.47 -1.15 16 22 S -0.15 -3.85 21.99 -56.49 -1.24 -5.09 16 23 H 0.00 0.17 7.87 -2.39 -0.02 0.15 16 24 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 26 H 0.32 14.30 6.79 -89.69 -0.61 13.69 16 27 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 28 H 0.12 4.76 6.90 -2.91 -0.02 4.74 16 29 H 0.14 4.04 8.05 -2.91 -0.02 4.02 16 30 H 0.11 4.33 7.92 -2.91 -0.02 4.30 16 31 H 0.09 1.88 8.02 -2.39 -0.02 1.86 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.33 8.03 -2.38 -0.02 1.31 16 34 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.56 8.08 -2.38 -0.02 1.55 16 Total: -1.00 -63.81 305.90 1.90 -61.91 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.46 Total: 20.67 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 3.46 Total: -37.30 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -2.81 Total: -86.41 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -1.24 Total: -5.09 kcal Total: -63.81 1.90 -61.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259183057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.693 kcal (2) G-P(sol) polarization free energy of solvation -63.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds