Wall clock time and date at job start Mon Mar 30 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75698 * 124.96280 * 2 1 4 4 C 1.76374 * 90.74613 * 179.97438 * 3 2 1 5 5 C 1.36478 * 140.88971 * 180.02562 * 4 3 2 6 6 C 1.46358 * 106.48577 * 179.97438 * 5 4 3 7 7 C 1.41324 * 127.00596 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00505 * 179.97438 * 7 6 5 9 9 C 1.39639 * 119.99832 * 0.02562 * 7 6 5 10 10 N 1.31069 * 120.00143 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99659 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47578 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46956 * 120.00370 * 11 9 7 14 14 H 1.48505 * 109.46982 * 239.99841 * 11 9 7 15 15 C 1.39133 * 105.98993 * 0.02562 * 6 5 4 16 16 C 1.50695 * 125.81395 * 179.97438 * 15 6 5 17 17 C 1.52999 * 109.47469 * 301.47265 * 16 15 6 18 18 C 1.53002 * 109.46902 * 61.47635 * 16 15 6 19 19 N 1.36174 * 109.32201 * 359.97438 * 4 3 2 20 20 C 1.30648 * 124.96958 * 179.68900 * 2 1 3 21 21 C 1.50703 * 121.73804 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.47434 * 0.03020 * 1 2 3 23 23 H 1.09003 * 109.47259 * 240.02676 * 1 2 3 24 24 H 1.09006 * 109.46590 * 120.03144 * 1 2 3 25 25 H 1.08005 * 126.75382 * 359.95739 * 5 4 3 26 26 H 0.97008 * 120.00089 * 179.97438 * 10 9 7 27 27 H 1.09005 * 109.46693 * 181.47329 * 16 15 6 28 28 H 1.08997 * 109.47134 * 59.99668 * 17 16 15 29 29 H 1.08992 * 109.47073 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.47143 * 300.00247 * 17 16 15 31 31 H 1.08991 * 109.47586 * 59.99808 * 18 16 15 32 32 H 1.09000 * 109.46653 * 180.02562 * 18 16 15 33 33 H 1.08997 * 109.46940 * 299.99223 * 18 16 15 34 34 H 1.08997 * 109.47096 * 96.02522 * 21 20 2 35 35 H 1.08995 * 109.46994 * 216.03232 * 21 20 2 36 36 H 1.09005 * 109.46713 * 336.02874 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5138 1.4399 0.0000 4 6 3.9723 0.4481 0.0008 5 6 5.3321 0.5645 0.0016 6 6 5.8656 -0.7984 0.0024 7 6 7.2266 -1.1790 0.0030 8 1 7.4948 -2.2252 0.0040 9 6 8.2247 -0.2025 0.0033 10 7 7.8994 1.0672 0.0036 11 14 10.0237 -0.7057 0.0047 12 1 10.1234 -2.1873 0.0059 13 1 10.6898 -0.1653 -1.2076 14 1 10.6882 -0.1644 1.2174 15 6 4.7599 -1.6428 0.0014 16 6 4.8008 -3.1492 0.0012 17 6 5.5684 -3.6384 -1.2286 18 6 5.5022 -3.6405 1.2691 19 7 3.6223 -0.8679 0.0016 20 6 2.2558 -1.0706 0.0058 21 6 1.6599 -2.4548 0.0128 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3634 -0.5134 0.8902 24 1 -0.3633 -0.5144 -0.8898 25 1 5.9022 1.4818 0.0015 26 1 8.5928 1.7456 0.0041 27 1 3.7837 -3.5402 -0.0262 28 1 6.5855 -3.2474 -1.2013 29 1 5.5976 -4.7280 -1.2289 30 1 5.0687 -3.2884 -2.1319 31 1 4.9554 -3.2921 2.1451 32 1 5.5322 -4.7301 1.2686 33 1 6.5193 -3.2495 1.2963 34 1 1.6157 -2.8364 -1.0073 35 1 2.2793 -3.1139 0.6209 36 1 0.6535 -2.4149 0.4297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259418699.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:30 Heat of formation + Delta-G solvation = 50.058261 kcal Electronic energy + Delta-G solvation = -18061.880905 eV Core-core repulsion = 15444.723742 eV Total energy + Delta-G solvation = -2617.157163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36522 -36.00518 -34.22551 -33.32647 -30.27259 -28.79963 -27.02059 -26.71921 -26.30850 -23.72557 -21.16679 -20.31305 -19.19354 -17.58643 -16.76986 -16.12290 -14.96347 -14.74758 -14.30589 -13.67239 -13.44714 -13.10247 -12.98506 -12.53779 -12.44335 -12.27498 -12.13126 -11.88802 -11.58868 -11.43148 -11.21901 -11.12220 -10.95585 -10.65967 -10.41226 -10.29386 -10.09638 -9.90756 -9.67122 -9.09343 -9.07169 -8.54449 -7.10605 -6.52866 -5.93694 -4.11618 2.07789 2.40118 2.83162 3.03639 3.14867 3.18843 3.63117 3.96446 4.08205 4.21053 5.25491 5.43361 5.49399 5.59319 5.69045 5.71649 5.78224 5.81913 5.84267 6.04071 6.09907 6.23586 6.33454 6.41045 6.51462 6.61201 6.71569 6.81604 6.96572 7.11462 7.17794 7.31832 7.42130 7.65139 8.09736 8.23856 8.61147 8.77498 9.08970 9.10911 10.41674 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023407 B = 0.007512 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.924427 B = 3726.452651 C = 4726.110174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.260 4.260 3 S 0.022 5.978 4 C -0.059 4.059 5 C -0.142 4.142 6 C 0.093 3.907 7 C -0.429 4.429 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.815 5.815 11 Si 0.910 3.090 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.276 1.276 15 C -0.153 4.153 16 C 0.010 3.990 17 C -0.143 4.143 18 C -0.142 4.142 19 N -0.386 5.386 20 C 0.107 3.893 21 C -0.096 4.096 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.163 0.837 26 H 0.274 0.726 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 -4.548 0.037 9.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.381 4.381 3 S 0.279 5.721 4 C -0.275 4.275 5 C -0.179 4.179 6 C 0.086 3.914 7 C -0.461 4.461 8 H 0.100 0.900 9 C -0.145 4.145 10 N -0.443 5.443 11 Si 0.736 3.264 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.257 4.257 16 C -0.009 4.009 17 C -0.200 4.200 18 C -0.199 4.199 19 N -0.060 5.060 20 C -0.006 4.006 21 C -0.155 4.155 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.180 0.820 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.297 -3.064 0.036 8.845 hybrid contribution 1.084 -1.360 -0.009 1.739 sum -7.214 -4.424 0.027 8.462 Atomic orbital electron populations 1.19964 0.87854 1.01910 1.01445 1.22498 0.99262 0.94361 1.21936 1.83789 0.94056 1.07304 1.86976 1.23228 0.97930 0.85824 1.20498 1.22570 0.86833 0.99831 1.08680 1.17998 0.91105 0.88782 0.93524 1.18927 0.88796 0.93827 1.44551 0.89967 1.25819 1.01189 0.94547 0.92930 1.69765 1.34583 1.00701 1.39294 0.86220 0.82146 0.79755 0.78294 1.18667 1.20170 1.20176 1.20256 0.81992 0.90902 1.32550 1.19087 0.97589 0.89589 0.94665 1.21879 1.02614 0.98167 0.97367 1.21862 1.02654 0.98208 0.97220 1.41645 1.02123 1.06095 1.56169 1.18810 0.82598 0.96678 1.02534 1.20698 1.00487 0.91584 1.02746 0.91997 0.91847 0.91878 0.81970 0.91531 0.93109 0.90699 0.94454 0.93848 0.93887 0.94407 0.90902 0.90951 0.90644 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.70 9.23 36.01 0.33 -0.37 16 2 C -0.26 -4.78 6.39 -35.93 -0.23 -5.01 16 3 S 0.02 0.45 23.35 -107.50 -2.51 -2.06 16 4 C -0.06 -1.47 7.71 -16.26 -0.13 -1.60 16 5 C -0.14 -3.83 9.94 -36.95 -0.37 -4.20 16 6 C 0.09 2.47 5.91 -105.13 -0.62 1.84 16 7 C -0.43 -11.05 7.64 -37.89 -0.29 -11.34 16 8 H 0.08 2.01 4.70 -52.49 -0.25 1.76 16 9 C 0.07 1.74 5.49 -17.35 -0.10 1.64 16 10 N -0.82 -21.19 10.40 55.53 0.58 -20.61 16 11 Si 0.91 18.91 29.56 -169.99 -5.02 13.89 16 12 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 13 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 15 C -0.15 -3.65 5.94 -79.65 -0.47 -4.12 16 16 C 0.01 0.20 3.03 -91.77 -0.28 -0.08 16 17 C -0.14 -2.68 9.02 37.16 0.34 -2.34 16 18 C -0.14 -2.65 9.05 37.16 0.34 -2.31 16 19 N -0.39 -9.06 3.10 -53.08 -0.16 -9.22 16 20 C 0.11 2.11 6.74 -81.36 -0.55 1.56 16 21 C -0.10 -1.45 9.03 36.01 0.33 -1.13 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.74 7.80 -51.93 -0.40 0.33 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.16 4.51 6.00 -52.48 -0.31 4.19 16 26 H 0.27 6.55 8.30 -40.82 -0.34 6.21 16 27 H 0.05 0.93 4.93 -51.93 -0.26 0.67 16 28 H 0.07 1.53 5.55 -51.93 -0.29 1.24 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.48 5.87 -51.93 -0.31 1.17 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.17 6.07 -51.93 -0.32 0.85 16 36 H 0.07 0.92 6.93 -51.93 -0.36 0.56 16 LS Contribution 295.98 15.07 4.46 4.46 Total: -1.00 -28.23 295.98 -8.94 -37.17 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.58 Total: 3.82 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -1.70 Total: -27.45 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.41 Total: -29.84 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.51 Total: -2.06 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.23 -8.94 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259418699.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.232 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds