Wall clock time and date at job start Mon Mar 30 2020 06:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47722 * 2 1 4 4 C 1.53005 * 109.46875 * 239.99662 * 2 1 3 5 5 C 1.50704 * 109.46865 * 120.00378 * 2 1 3 6 6 C 1.30768 * 121.78590 * 4.97194 * 5 2 1 7 7 S 1.75755 * 109.94966 * 180.02562 * 6 5 2 8 8 C 1.76193 * 90.72343 * 0.02562 * 7 6 5 9 9 C 1.36751 * 141.95767 * 179.97438 * 8 7 6 10 10 C 1.40337 * 107.24928 * 179.97438 * 9 8 7 11 11 C 1.50700 * 126.19579 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.46869 * 90.02590 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.34728 * 107.61688 * 0.26338 * 10 9 8 21 21 N 1.35695 * 109.36118 * 359.97301 * 8 7 6 22 22 H 1.09000 * 109.46955 * 299.99820 * 1 2 3 23 23 H 1.09000 * 109.47159 * 59.99413 * 1 2 3 24 24 H 1.08998 * 109.47366 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47822 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47283 * 300.00511 * 3 2 1 27 27 H 1.08996 * 109.47054 * 59.99654 * 3 2 1 28 28 H 1.08998 * 109.47292 * 300.00251 * 4 2 1 29 29 H 1.08999 * 109.46952 * 60.00724 * 4 2 1 30 30 H 1.09001 * 109.46713 * 180.02562 * 4 2 1 31 31 H 1.07991 * 125.02201 * 0.04243 * 6 5 2 32 32 H 1.08002 * 126.37652 * 0.02562 * 9 8 7 33 33 H 1.09004 * 109.47210 * 330.02883 * 11 10 9 34 34 H 1.08994 * 109.47551 * 210.02536 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 36 36 H 1.07993 * 125.71267 * 179.69939 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 2.0322 -0.7105 1.2305 6 6 1.2178 -1.3033 2.0643 7 16 2.1296 -2.0267 3.3812 8 6 3.6403 -1.4489 2.6822 9 6 4.9918 -1.4458 2.8909 10 6 5.5750 -0.7360 1.8300 11 6 7.0464 -0.4735 1.6373 12 6 7.6546 -1.5916 0.8305 13 1 7.0374 -2.4102 0.4909 14 6 8.9979 -1.5664 0.5206 15 7 9.7495 -0.5694 0.9338 16 14 9.7502 -2.9485 -0.4860 17 1 9.0783 -3.0202 -1.8084 18 1 11.1992 -2.6875 -0.6800 19 1 9.5715 -4.2369 0.2306 20 6 4.5808 -0.3261 1.0183 21 7 3.3756 -0.7696 1.5378 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9562 0.8899 28 1 1.6765 -1.7490 -1.2492 29 1 1.6766 -0.2075 -2.1392 30 1 3.1299 -0.7217 -1.2490 31 1 0.1437 -1.3426 1.9591 32 1 5.5133 -1.9049 3.7177 33 1 7.5361 -0.4189 2.6096 34 1 7.1810 0.4704 1.1092 35 1 10.6946 -0.5519 0.7160 36 1 4.7031 0.2501 0.1132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259435021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:05 Heat of formation + Delta-G solvation = 61.156656 kcal Electronic energy + Delta-G solvation = -17551.137184 eV Core-core repulsion = 14934.461284 eV Total energy + Delta-G solvation = -2616.675900 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.60330 -37.87605 -34.31521 -32.73305 -30.19090 -28.94591 -27.40767 -27.29404 -26.34406 -23.39780 -22.93126 -20.22829 -19.04328 -18.72336 -17.29861 -16.21850 -15.29935 -15.15210 -14.60153 -14.46336 -14.11666 -13.82390 -13.44995 -13.29133 -12.44090 -12.33821 -12.20772 -11.99861 -11.83259 -11.72502 -11.49236 -11.24476 -11.09454 -10.90394 -10.69933 -10.64347 -10.50003 -10.31749 -9.66954 -9.42717 -9.26739 -8.34965 -7.57892 -6.73747 -5.96967 -3.99513 1.46305 1.70814 2.14078 2.83178 3.17378 3.36103 3.39911 3.42728 3.72048 4.37442 4.51328 4.65012 4.74074 5.06737 5.29361 5.37729 5.37892 5.46346 5.49324 5.58054 5.67349 5.73291 5.76717 5.87141 5.90588 6.15177 6.18202 6.22473 6.26141 6.74287 6.88602 7.25946 7.47220 7.63501 7.88871 7.95385 8.00295 8.43390 9.05455 9.63587 11.12872 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023661 B = 0.005456 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.108057 B = 5130.275826 C = 5670.767612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.010 4.010 3 C -0.147 4.147 4 C -0.144 4.144 5 C 0.115 3.885 6 C -0.252 4.252 7 S 0.066 5.934 8 C -0.054 4.054 9 C -0.146 4.146 10 C -0.063 4.063 11 C 0.078 3.922 12 C -0.507 4.507 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.032 4.032 21 N -0.394 5.394 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.179 0.821 32 H 0.139 0.861 33 H 0.030 0.970 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.011 1.632 -0.816 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.013 4.013 3 C -0.204 4.204 4 C -0.202 4.202 5 C 0.004 3.996 6 C -0.388 4.388 7 S 0.324 5.676 8 C -0.273 4.273 9 C -0.180 4.180 10 C -0.070 4.070 11 C 0.041 3.959 12 C -0.546 4.546 13 H 0.074 0.926 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.158 4.158 21 N -0.067 5.067 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.197 0.803 32 H 0.157 0.843 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.463 1.003 0.206 19.490 hybrid contribution 0.831 -0.091 -1.710 1.903 sum -18.632 0.912 -1.504 18.715 Atomic orbital electron populations 1.21933 0.92900 1.02382 1.02537 1.19414 0.96006 0.95161 0.90703 1.21965 1.02400 0.93862 1.02179 1.21921 1.02329 1.00240 0.95679 1.19030 0.81674 1.00696 0.98158 1.24351 1.03544 1.10387 1.00565 1.84166 0.93073 1.62919 1.27446 1.23280 0.98878 1.09990 0.95173 1.20449 0.88280 1.06909 1.02399 1.20289 0.97390 0.96616 0.92666 1.17798 0.83303 0.97154 0.97690 1.21073 0.93501 1.06905 1.33090 0.92631 1.24992 0.97193 0.95953 0.96200 1.69948 1.06354 1.31056 1.46222 0.86636 0.77967 0.82606 0.80678 1.20327 1.21297 1.20226 1.21780 0.80011 1.10729 1.03242 1.42342 1.03921 1.41010 1.19399 0.91952 0.91565 0.91952 0.91525 0.91685 0.92297 0.92267 0.91669 0.91632 0.80349 0.84325 0.95126 0.95467 0.92903 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 7.22 37.16 0.27 -0.91 16 2 C -0.01 -0.11 0.90 -155.66 -0.14 -0.25 16 3 C -0.15 -1.65 8.35 37.15 0.31 -1.34 16 4 C -0.14 -1.66 8.46 37.16 0.31 -1.35 16 5 C 0.12 1.67 5.31 -81.50 -0.43 1.24 16 6 C -0.25 -3.33 9.88 29.08 0.29 -3.04 16 7 S 0.07 0.99 23.37 -107.50 -2.51 -1.52 16 8 C -0.05 -1.04 7.77 -16.38 -0.13 -1.16 16 9 C -0.15 -3.08 10.87 -39.33 -0.43 -3.51 16 10 C -0.06 -1.44 5.30 -105.08 -0.56 -1.99 16 11 C 0.08 2.05 5.47 -29.03 -0.16 1.89 16 12 C -0.51 -14.41 9.09 -34.44 -0.31 -14.72 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.03 -0.64 9.94 -15.76 -0.16 -0.80 16 21 N -0.39 -7.10 3.10 -58.23 -0.18 -7.28 16 22 H 0.06 0.49 7.86 -51.93 -0.41 0.09 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.49 7.44 -51.93 -0.39 0.10 16 25 H 0.07 0.87 5.84 -51.93 -0.30 0.56 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.90 7.14 -51.93 -0.37 0.53 16 31 H 0.18 1.77 6.47 -52.49 -0.34 1.43 16 32 H 0.14 2.77 8.06 -52.49 -0.42 2.35 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.16 2.94 6.73 -52.49 -0.35 2.59 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -30.63 307.20 -8.66 -39.29 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.08 Total: -1.59 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -1.23 Total: -24.40 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.56 Total: -33.19 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.52 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.63 -8.66 -39.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259435021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.445 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds