Wall clock time and date at job start Mon Mar 30 2020 06:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47722 * 2 1 4 4 C 1.53005 * 109.46875 * 239.99662 * 2 1 3 5 5 C 1.50704 * 109.46865 * 120.00378 * 2 1 3 6 6 C 1.30768 * 121.78590 * 4.97194 * 5 2 1 7 7 S 1.75755 * 109.94966 * 180.02562 * 6 5 2 8 8 C 1.76193 * 90.72343 * 0.02562 * 7 6 5 9 9 C 1.36751 * 141.95767 * 179.97438 * 8 7 6 10 10 C 1.40337 * 107.24928 * 179.97438 * 9 8 7 11 11 C 1.50700 * 126.19579 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.46869 * 90.02590 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.34728 * 107.61688 * 0.26338 * 10 9 8 21 21 N 1.35695 * 109.36118 * 359.97301 * 8 7 6 22 22 H 1.09000 * 109.46955 * 299.99820 * 1 2 3 23 23 H 1.09000 * 109.47159 * 59.99413 * 1 2 3 24 24 H 1.08998 * 109.47366 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47822 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47283 * 300.00511 * 3 2 1 27 27 H 1.08996 * 109.47054 * 59.99654 * 3 2 1 28 28 H 1.08998 * 109.47292 * 300.00251 * 4 2 1 29 29 H 1.08999 * 109.46952 * 60.00724 * 4 2 1 30 30 H 1.09001 * 109.46713 * 180.02562 * 4 2 1 31 31 H 1.07991 * 125.02201 * 0.04243 * 6 5 2 32 32 H 1.08002 * 126.37652 * 0.02562 * 9 8 7 33 33 H 1.09004 * 109.47210 * 330.02883 * 11 10 9 34 34 H 1.08994 * 109.47551 * 210.02536 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 36 36 H 1.07993 * 125.71267 * 179.69939 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 2.0322 -0.7105 1.2305 6 6 1.2178 -1.3033 2.0643 7 16 2.1296 -2.0267 3.3812 8 6 3.6403 -1.4489 2.6822 9 6 4.9918 -1.4458 2.8909 10 6 5.5750 -0.7360 1.8300 11 6 7.0464 -0.4735 1.6373 12 6 7.6546 -1.5916 0.8305 13 1 7.0374 -2.4102 0.4909 14 6 8.9979 -1.5664 0.5206 15 7 9.7495 -0.5694 0.9338 16 14 9.7502 -2.9485 -0.4860 17 1 9.0783 -3.0202 -1.8084 18 1 11.1992 -2.6875 -0.6800 19 1 9.5715 -4.2369 0.2306 20 6 4.5808 -0.3261 1.0183 21 7 3.3756 -0.7696 1.5378 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9562 0.8899 28 1 1.6765 -1.7490 -1.2492 29 1 1.6766 -0.2075 -2.1392 30 1 3.1299 -0.7217 -1.2490 31 1 0.1437 -1.3426 1.9591 32 1 5.5133 -1.9049 3.7177 33 1 7.5361 -0.4189 2.6096 34 1 7.1810 0.4704 1.1092 35 1 10.6946 -0.5519 0.7160 36 1 4.7031 0.2501 0.1132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259435021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:05 Heat of formation + Delta-G solvation = 45.612062 kcal Electronic energy + Delta-G solvation = -17551.811248 eV Core-core repulsion = 14934.461284 eV Total energy + Delta-G solvation = -2617.349964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.00813 -38.96899 -35.87979 -34.59520 -31.79790 -30.47660 -28.56256 -28.26590 -27.70471 -25.12258 -24.41341 -21.52014 -20.57362 -20.13155 -18.49946 -18.40702 -16.58069 -16.47013 -16.28396 -15.73118 -15.09537 -14.99876 -14.80225 -14.51894 -14.33311 -13.75562 -13.66618 -13.24059 -13.01648 -12.89289 -12.65213 -12.59520 -12.51764 -12.31829 -12.21208 -11.85418 -11.81420 -11.73584 -11.63939 -11.38533 -10.71971 -10.56905 -9.20798 -8.16219 -8.08597 -6.28809 0.19593 0.36952 0.90128 1.39565 1.42498 1.43266 1.50954 1.84576 2.02401 2.45457 3.13717 3.40003 3.79673 3.92505 3.96133 4.21087 4.32503 4.48886 4.61549 4.65453 4.66694 4.79436 4.80426 4.94525 4.94994 5.02965 5.05428 5.11796 5.22717 5.28803 5.36091 5.38433 5.54734 5.77590 5.88138 6.11022 6.24059 6.42080 6.82498 7.38936 8.92736 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023661 B = 0.005456 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.108057 B = 5130.275826 C = 5670.767612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.007 4.007 3 C -0.147 4.147 4 C -0.143 4.143 5 C 0.085 3.915 6 C -0.227 4.227 7 S 0.103 5.897 8 C -0.063 4.063 9 C -0.182 4.182 10 C -0.100 4.100 11 C 0.090 3.910 12 C -0.525 4.525 13 H 0.049 0.951 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.271 1.271 20 C -0.024 4.024 21 N -0.388 5.388 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.223 0.777 32 H 0.135 0.865 33 H 0.002 0.998 34 H 0.006 0.994 35 H 0.265 0.735 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.291 0.816 -1.870 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.010 4.010 3 C -0.204 4.204 4 C -0.201 4.201 5 C -0.024 4.024 6 C -0.363 4.363 7 S 0.361 5.639 8 C -0.284 4.284 9 C -0.216 4.216 10 C -0.106 4.106 11 C 0.052 3.948 12 C -0.563 4.563 13 H 0.067 0.933 14 C -0.192 4.192 15 N -0.570 5.570 16 Si 0.788 3.212 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.196 1.196 20 C -0.151 4.151 21 N -0.060 5.060 22 H 0.090 0.910 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.058 0.942 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.053 0.947 31 H 0.240 0.760 32 H 0.153 0.847 33 H 0.021 0.979 34 H 0.024 0.976 35 H 0.074 0.926 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.781 0.189 -0.847 22.798 hybrid contribution 1.693 0.177 -1.324 2.157 sum -21.088 0.366 -2.171 21.202 Atomic orbital electron populations 1.21948 0.89820 1.03581 1.04018 1.19558 0.98224 0.94351 0.88854 1.21972 1.00716 0.94366 1.03353 1.21925 1.00366 1.00795 0.97004 1.19688 0.79958 1.02438 1.00312 1.24981 1.05241 1.07620 0.98476 1.84111 0.90309 1.62051 1.27454 1.23688 0.99840 1.09212 0.95617 1.20368 0.89762 1.08773 1.02705 1.19937 0.96016 0.99617 0.95053 1.17464 0.86048 0.95760 0.95498 1.21343 0.94098 1.07293 1.33610 0.93256 1.25881 0.97545 0.98545 0.97212 1.70073 1.06760 1.32927 1.47267 0.85532 0.77306 0.79225 0.79165 1.19302 1.20331 1.19608 1.21664 0.80548 1.10065 1.02847 1.42478 1.04934 1.39890 1.18701 0.91015 0.89713 0.90833 0.94213 0.89349 0.92275 0.92178 0.89286 0.94718 0.76045 0.84734 0.97948 0.97554 0.92585 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.22 71.98 0.52 -1.11 16 2 C -0.01 -0.14 0.90 -52.93 -0.05 -0.18 16 3 C -0.15 -3.02 8.35 71.98 0.60 -2.41 16 4 C -0.14 -3.01 8.46 71.98 0.61 -2.40 16 5 C 0.08 2.26 5.31 41.80 0.22 2.48 16 6 C -0.23 -5.10 9.88 68.02 0.67 -4.43 16 7 S 0.10 2.84 23.37 -56.49 -1.32 1.52 16 8 C -0.06 -2.39 7.77 83.75 0.65 -1.74 16 9 C -0.18 -8.09 10.87 22.43 0.24 -7.85 16 10 C -0.10 -4.82 5.30 -20.16 -0.11 -4.93 16 11 C 0.09 5.07 5.47 29.10 0.16 5.23 16 12 C -0.53 -31.24 9.09 25.60 0.23 -31.00 16 13 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 14 C 0.01 0.36 5.46 84.66 0.46 0.82 16 15 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 16 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 20 C -0.02 -0.98 9.94 82.83 0.82 -0.16 16 21 N -0.39 -13.90 3.10 -338.13 -1.05 -14.95 16 22 H 0.07 0.76 7.86 -2.39 -0.02 0.74 16 23 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.74 7.44 -2.39 -0.02 0.72 16 25 H 0.04 1.02 5.84 -2.39 -0.01 1.01 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.03 0.93 7.14 -2.39 -0.02 0.91 16 31 H 0.22 3.02 6.47 -2.91 -0.02 3.00 16 32 H 0.13 5.81 8.06 -2.91 -0.02 5.79 16 33 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 34 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 36 H 0.17 6.53 6.73 -2.91 -0.02 6.51 16 Total: -1.00 -69.29 307.20 6.05 -63.25 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.06 Total: 7.29 kcal Atomic # 6 Polarization: -52.73 SS G_CDS: 5.04 Total: -47.69 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -0.76 Total: -71.82 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.32 Total: 1.52 kcal Total: -69.29 6.05 -63.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259435021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.860 kcal (2) G-P(sol) polarization free energy of solvation -69.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds