Wall clock time and date at job start Mon Mar 30 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.30769 * 121.78511 * 2 1 4 4 C 1.50697 * 125.02544 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47367 * 120.02141 * 4 3 2 6 6 C 1.52997 * 109.47405 * 240.02366 * 4 3 2 7 7 S 1.75757 * 109.95098 * 180.02562 * 3 2 1 8 8 C 1.76196 * 90.72362 * 359.97438 * 7 3 2 9 9 C 1.36746 * 141.95596 * 179.97438 * 8 7 3 10 10 C 1.40345 * 107.24889 * 180.02562 * 9 8 7 11 11 C 1.50698 * 126.19745 * 179.74054 * 10 9 8 12 12 C 1.50700 * 109.47267 * 90.01851 * 11 10 9 13 13 H 1.08000 * 119.99930 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99948 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99804 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99755 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47148 * 60.00583 * 16 14 12 18 18 H 1.48504 * 109.46529 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47429 * 300.00179 * 16 14 12 20 20 C 1.34736 * 107.60894 * 359.97438 * 10 9 8 21 21 N 1.35699 * 109.35844 * 0.02562 * 8 7 3 22 22 H 1.08993 * 109.47432 * 89.99675 * 1 2 3 23 23 H 1.08996 * 109.47106 * 210.00334 * 1 2 3 24 24 H 1.09000 * 109.47075 * 329.99743 * 1 2 3 25 25 H 1.09003 * 109.46973 * 0.02562 * 4 3 2 26 26 H 1.08996 * 109.47212 * 180.02562 * 5 4 3 27 27 H 1.09005 * 109.47062 * 300.00432 * 5 4 3 28 28 H 1.09003 * 109.46893 * 60.00173 * 5 4 3 29 29 H 1.09005 * 109.46775 * 59.99879 * 6 4 3 30 30 H 1.08996 * 109.47348 * 179.97438 * 6 4 3 31 31 H 1.08996 * 109.46887 * 300.00258 * 6 4 3 32 32 H 1.08004 * 126.37923 * 359.97438 * 9 8 7 33 33 H 1.08995 * 109.46878 * 210.02361 * 11 10 9 34 34 H 1.09000 * 109.46607 * 330.02239 * 11 10 9 35 35 H 0.96992 * 119.99764 * 179.97438 * 15 14 12 36 36 H 1.08003 * 125.70239 * 179.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.1116 0.0000 4 6 1.6023 2.4968 0.0006 5 6 2.0654 3.2495 1.2495 6 6 2.0635 3.2497 -1.2489 7 16 3.9160 0.7511 -0.0007 8 6 3.5764 -0.9778 -0.0002 9 6 4.1958 -2.1969 -0.0007 10 6 3.1894 -3.1751 -0.0002 11 6 3.3987 -4.6674 -0.0060 12 6 3.4732 -5.1697 1.4129 13 1 3.3781 -4.4776 2.2365 14 6 3.6619 -6.5131 1.6596 15 7 3.7772 -7.3560 0.6567 16 14 3.7535 -7.1358 3.4184 17 1 2.4862 -6.8161 4.1234 18 1 3.9599 -8.6064 3.4126 19 1 4.8878 -6.4799 4.1173 20 6 2.0020 -2.5382 0.0010 21 7 2.2335 -1.1725 -0.0001 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 0.5146 2.4261 0.0014 26 1 1.6358 4.2513 1.2501 27 1 1.7368 2.7131 2.1397 28 1 3.1531 3.3203 1.2487 29 1 1.7336 2.7134 -2.1387 30 1 1.6339 4.2515 -1.2488 31 1 3.1512 3.3204 -1.2498 32 1 5.2612 -2.3742 -0.0020 33 1 2.5662 -5.1491 -0.5187 34 1 4.3289 -4.9018 -0.5237 35 1 3.9103 -8.3010 0.8303 36 1 1.0321 -3.0132 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259490187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:28 Heat of formation + Delta-G solvation = 56.210737 kcal Electronic energy + Delta-G solvation = -17104.976058 eV Core-core repulsion = 14488.085687 eV Total energy + Delta-G solvation = -2616.890371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.43507 -37.42360 -34.53943 -32.88628 -30.60167 -28.82106 -28.15129 -27.35646 -26.16253 -23.36682 -21.70905 -21.12431 -18.80941 -18.55256 -17.72628 -16.21193 -15.30062 -15.22269 -14.64860 -14.54909 -14.24686 -13.46209 -13.36604 -13.04734 -12.65513 -12.46288 -12.31352 -12.26553 -12.00735 -11.84198 -11.51016 -11.46163 -11.26526 -10.98031 -10.65921 -10.58688 -10.32928 -10.20342 -9.64206 -9.40632 -9.23431 -8.34561 -7.53365 -6.71903 -5.96509 -3.99147 1.42769 1.67567 2.15194 2.81990 3.15258 3.36556 3.40191 3.43136 3.72546 4.51706 4.52729 4.69661 4.90465 4.93427 5.09651 5.31165 5.37225 5.39320 5.41463 5.46516 5.61609 5.63730 5.74639 5.81628 5.94216 6.03224 6.07136 6.20343 6.28890 6.75192 6.88993 7.26254 7.47766 7.64059 7.89719 7.95891 8.00785 8.43920 9.05867 9.63939 11.13355 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.036135 B = 0.004366 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.692163 B = 6411.776608 C = 6465.547654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.094 3.906 3 C -0.208 4.208 4 C -0.013 4.013 5 C -0.146 4.146 6 C -0.145 4.145 7 S 0.076 5.924 8 C -0.056 4.056 9 C -0.146 4.146 10 C -0.064 4.064 11 C 0.078 3.922 12 C -0.508 4.508 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.034 4.034 21 N -0.398 5.398 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.139 0.861 33 H 0.027 0.973 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 20.320 -2.491 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.016 4.016 3 C -0.327 4.327 4 C -0.033 4.033 5 C -0.204 4.204 6 C -0.203 4.203 7 S 0.334 5.666 8 C -0.275 4.275 9 C -0.181 4.181 10 C -0.070 4.070 11 C 0.041 3.959 12 C -0.546 4.546 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.159 4.159 21 N -0.071 5.071 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.850 21.122 -2.533 21.820 hybrid contribution -1.058 -1.392 1.030 2.029 sum -5.908 19.730 -1.503 20.651 Atomic orbital electron populations 1.20654 0.87685 1.03953 1.03362 1.18911 0.95237 0.83779 1.03688 1.23054 0.96361 0.97607 1.15661 1.19591 0.99725 0.87773 0.96246 1.21886 1.01836 0.99655 0.97024 1.21869 1.01794 0.99634 0.96961 1.84033 1.03235 0.94185 1.85137 1.23287 0.86972 0.98294 1.18922 1.20454 0.99391 0.87754 1.10472 1.20282 0.90249 0.97983 0.98490 1.17798 0.97876 0.82849 0.97408 1.21081 1.49292 0.92395 0.91830 0.92621 1.24997 0.95440 0.96893 0.97039 1.69948 1.49993 1.03139 1.30537 0.86626 0.78629 0.77522 0.85060 1.20314 1.21294 1.20221 1.21809 1.00389 0.77229 1.16499 1.42402 1.05042 1.05087 1.54576 0.90241 0.90641 0.89764 0.89442 0.92059 0.92236 0.92267 0.92268 0.92068 0.92289 0.84317 0.95433 0.95106 0.92897 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.70 36.00 0.35 -0.71 16 2 C 0.09 1.40 6.75 -81.50 -0.55 0.85 16 3 C -0.21 -2.79 5.00 -35.96 -0.18 -2.97 16 4 C -0.01 -0.12 3.10 -91.77 -0.28 -0.41 16 5 C -0.15 -1.29 9.11 37.16 0.34 -0.95 16 6 C -0.15 -1.25 9.11 37.16 0.34 -0.91 16 7 S 0.08 1.16 22.88 -107.50 -2.46 -1.30 16 8 C -0.06 -1.09 7.77 -16.38 -0.13 -1.21 16 9 C -0.15 -3.14 10.87 -39.33 -0.43 -3.57 16 10 C -0.06 -1.47 5.30 -105.07 -0.56 -2.03 16 11 C 0.08 2.07 5.47 -29.04 -0.16 1.91 16 12 C -0.51 -14.55 9.09 -34.44 -0.31 -14.86 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 16 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.03 -0.69 11.75 -15.77 -0.19 -0.88 16 21 N -0.40 -7.44 3.16 -58.23 -0.18 -7.62 16 22 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.08 0.71 6.50 -51.93 -0.34 0.37 16 25 H 0.09 0.71 6.10 -51.93 -0.32 0.39 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.56 7.99 -51.93 -0.41 0.15 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.54 7.99 -51.93 -0.41 0.13 16 32 H 0.14 2.82 8.06 -52.48 -0.42 2.39 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.16 2.98 8.06 -52.48 -0.42 2.56 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -31.42 314.53 -9.29 -40.72 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -5.25 Total: -3.13 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -1.85 Total: -24.20 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.55 Total: -33.70 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.46 Total: -1.30 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.42 -9.29 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259490187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.926 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds