Wall clock time and date at job start Mon Mar 30 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.30769 * 121.78511 * 2 1 4 4 C 1.50697 * 125.02544 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47367 * 120.02141 * 4 3 2 6 6 C 1.52997 * 109.47405 * 240.02366 * 4 3 2 7 7 S 1.75757 * 109.95098 * 180.02562 * 3 2 1 8 8 C 1.76196 * 90.72362 * 359.97438 * 7 3 2 9 9 C 1.36746 * 141.95596 * 179.97438 * 8 7 3 10 10 C 1.40345 * 107.24889 * 180.02562 * 9 8 7 11 11 C 1.50698 * 126.19745 * 179.74054 * 10 9 8 12 12 C 1.50700 * 109.47267 * 90.01851 * 11 10 9 13 13 H 1.08000 * 119.99930 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99948 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99804 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99755 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47148 * 60.00583 * 16 14 12 18 18 H 1.48504 * 109.46529 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47429 * 300.00179 * 16 14 12 20 20 C 1.34736 * 107.60894 * 359.97438 * 10 9 8 21 21 N 1.35699 * 109.35844 * 0.02562 * 8 7 3 22 22 H 1.08993 * 109.47432 * 89.99675 * 1 2 3 23 23 H 1.08996 * 109.47106 * 210.00334 * 1 2 3 24 24 H 1.09000 * 109.47075 * 329.99743 * 1 2 3 25 25 H 1.09003 * 109.46973 * 0.02562 * 4 3 2 26 26 H 1.08996 * 109.47212 * 180.02562 * 5 4 3 27 27 H 1.09005 * 109.47062 * 300.00432 * 5 4 3 28 28 H 1.09003 * 109.46893 * 60.00173 * 5 4 3 29 29 H 1.09005 * 109.46775 * 59.99879 * 6 4 3 30 30 H 1.08996 * 109.47348 * 179.97438 * 6 4 3 31 31 H 1.08996 * 109.46887 * 300.00258 * 6 4 3 32 32 H 1.08004 * 126.37923 * 359.97438 * 9 8 7 33 33 H 1.08995 * 109.46878 * 210.02361 * 11 10 9 34 34 H 1.09000 * 109.46607 * 330.02239 * 11 10 9 35 35 H 0.96992 * 119.99764 * 179.97438 * 15 14 12 36 36 H 1.08003 * 125.70239 * 179.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.1116 0.0000 4 6 1.6023 2.4968 0.0006 5 6 2.0654 3.2495 1.2495 6 6 2.0635 3.2497 -1.2489 7 16 3.9160 0.7511 -0.0007 8 6 3.5764 -0.9778 -0.0002 9 6 4.1958 -2.1969 -0.0007 10 6 3.1894 -3.1751 -0.0002 11 6 3.3987 -4.6674 -0.0060 12 6 3.4732 -5.1697 1.4129 13 1 3.3781 -4.4776 2.2365 14 6 3.6619 -6.5131 1.6596 15 7 3.7772 -7.3560 0.6567 16 14 3.7535 -7.1358 3.4184 17 1 2.4862 -6.8161 4.1234 18 1 3.9599 -8.6064 3.4126 19 1 4.8878 -6.4799 4.1173 20 6 2.0020 -2.5382 0.0010 21 7 2.2335 -1.1725 -0.0001 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 0.5146 2.4261 0.0014 26 1 1.6358 4.2513 1.2501 27 1 1.7368 2.7131 2.1397 28 1 3.1531 3.3203 1.2487 29 1 1.7336 2.7134 -2.1387 30 1 1.6339 4.2515 -1.2488 31 1 3.1512 3.3204 -1.2498 32 1 5.2612 -2.3742 -0.0020 33 1 2.5662 -5.1491 -0.5187 34 1 4.3289 -4.9018 -0.5237 35 1 3.9103 -8.3010 0.8303 36 1 1.0321 -3.0132 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259490187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:28 Heat of formation + Delta-G solvation = 40.496266 kcal Electronic energy + Delta-G solvation = -17105.657489 eV Core-core repulsion = 14488.085687 eV Total energy + Delta-G solvation = -2617.571802 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.89448 -38.52873 -35.91935 -34.74601 -32.16480 -30.24645 -29.68705 -28.01180 -27.64466 -25.24048 -23.13370 -22.27044 -20.32322 -19.85307 -19.03494 -18.43588 -16.63321 -16.51918 -16.25794 -15.93817 -15.18385 -14.68081 -14.51953 -14.21278 -14.02295 -13.83205 -13.72355 -13.55242 -13.35188 -13.11125 -12.90680 -12.64399 -12.35229 -12.33659 -12.21857 -12.19326 -11.75646 -11.65427 -11.51974 -11.13015 -10.73201 -10.57222 -9.15697 -8.16480 -8.09629 -6.29350 0.15875 0.33095 0.88493 1.38767 1.39701 1.43240 1.51217 1.80687 2.00228 2.45283 3.13319 3.54210 3.89467 3.91690 4.12507 4.22371 4.27390 4.47634 4.51550 4.58642 4.66657 4.79076 4.79837 4.95730 4.97788 5.04459 5.07987 5.13623 5.17259 5.35706 5.37728 5.38135 5.54993 5.77229 5.86390 6.08790 6.23399 6.41083 6.81993 7.38477 8.92465 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.036135 B = 0.004366 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.692163 B = 6411.776608 C = 6465.547654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.059 3.941 3 C -0.186 4.186 4 C -0.013 4.013 5 C -0.146 4.146 6 C -0.145 4.145 7 S 0.103 5.897 8 C -0.064 4.064 9 C -0.183 4.183 10 C -0.100 4.100 11 C 0.090 3.910 12 C -0.527 4.527 13 H 0.049 0.951 14 C 0.006 3.994 15 N -0.931 5.931 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.271 1.271 20 C -0.030 4.030 21 N -0.395 5.395 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.135 0.865 33 H 0.008 0.992 34 H 0.002 0.998 35 H 0.266 0.734 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 23.235 -1.483 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.048 4.048 3 C -0.304 4.304 4 C -0.034 4.034 5 C -0.204 4.204 6 C -0.202 4.202 7 S 0.362 5.638 8 C -0.285 4.285 9 C -0.217 4.217 10 C -0.106 4.106 11 C 0.052 3.948 12 C -0.565 4.565 13 H 0.068 0.932 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.196 1.196 20 C -0.157 4.157 21 N -0.067 5.067 22 H 0.113 0.887 23 H 0.087 0.913 24 H 0.133 0.867 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.153 0.847 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.074 0.926 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.503 24.073 -1.530 24.983 hybrid contribution -0.547 -2.096 0.659 2.264 sum -7.050 21.977 -0.871 23.097 Atomic orbital electron populations 1.20802 0.84562 1.05156 1.04725 1.19625 0.97357 0.82494 1.05366 1.23759 0.94909 0.99306 1.12476 1.19863 1.01034 0.85244 0.97247 1.21905 1.01368 1.00960 0.96152 1.21883 1.01335 1.00906 0.96073 1.83989 1.05117 0.90434 1.84298 1.23673 0.87499 1.00114 1.17200 1.20387 0.99197 0.88763 1.13315 1.19944 0.92288 0.96415 1.01957 1.17468 0.95543 0.85638 0.96110 1.21351 1.49680 0.92868 0.92566 0.93231 1.25895 0.94692 0.96948 1.01697 1.70071 1.50512 1.03557 1.32921 0.85511 0.79012 0.77167 0.79414 1.19236 1.20319 1.19632 1.21803 1.00007 0.78356 1.15555 1.42598 1.05268 1.05445 1.53419 0.88723 0.91324 0.86667 0.86806 0.89364 0.92787 0.93262 0.92625 0.89418 0.93255 0.84741 0.97366 0.97942 0.92554 0.80576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.70 71.23 0.69 -1.04 16 2 C 0.06 1.64 6.75 41.79 0.28 1.92 16 3 C -0.19 -4.48 5.00 25.88 0.13 -4.36 16 4 C -0.01 -0.20 3.10 -11.54 -0.04 -0.24 16 5 C -0.15 -2.00 9.11 71.98 0.66 -1.34 16 6 C -0.14 -1.91 9.11 71.98 0.66 -1.25 16 7 S 0.10 3.02 22.88 -56.49 -1.29 1.73 16 8 C -0.06 -2.52 7.77 83.75 0.65 -1.87 16 9 C -0.18 -8.28 10.87 22.43 0.24 -8.04 16 10 C -0.10 -4.87 5.30 -20.16 -0.11 -4.98 16 11 C 0.09 5.10 5.47 29.10 0.16 5.26 16 12 C -0.53 -31.43 9.09 25.60 0.23 -31.20 16 13 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 14 C 0.01 0.33 5.46 84.65 0.46 0.79 16 15 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 16 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 C -0.03 -1.25 11.75 82.83 0.97 -0.28 16 21 N -0.40 -14.65 3.16 -338.14 -1.07 -15.72 16 22 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.11 1.39 6.50 -2.39 -0.02 1.37 16 25 H 0.11 1.21 6.10 -2.39 -0.01 1.19 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.05 0.77 7.99 -2.39 -0.02 0.75 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.75 7.99 -2.39 -0.02 0.73 16 32 H 0.13 5.92 8.06 -2.91 -0.02 5.89 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.53 16 36 H 0.18 6.64 8.06 -2.91 -0.02 6.62 16 Total: -1.00 -70.71 314.53 6.00 -64.71 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.06 Total: 5.38 kcal Atomic # 6 Polarization: -51.61 SS G_CDS: 4.99 Total: -46.62 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -0.78 Total: -72.72 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.29 Total: 1.73 kcal Total: -70.71 6.00 -64.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259490187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.208 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds