Wall clock time and date at job start Mon Mar 30 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.75749 * 125.02473 * 2 1 4 4 C 1.76193 * 90.72166 * 180.02562 * 3 2 1 5 5 C 1.36753 * 141.95901 * 179.97438 * 4 3 2 6 6 C 1.40342 * 107.25015 * 180.02562 * 5 4 3 7 7 C 1.50690 * 126.19457 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.47281 * 90.02754 * 7 6 5 9 9 H 1.07998 * 119.99337 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00425 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00112 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99845 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47167 * 90.00263 * 12 10 8 14 14 H 1.48510 * 109.46949 * 209.99865 * 12 10 8 15 15 H 1.48496 * 109.47355 * 329.99938 * 12 10 8 16 16 C 1.34724 * 107.61133 * 0.02562 * 6 5 4 17 17 N 1.35694 * 109.35995 * 359.75823 * 4 3 2 18 18 C 1.30763 * 125.01981 * 180.02562 * 2 1 3 19 19 C 1.50696 * 121.78901 * 359.97438 * 18 2 1 20 20 C 1.52998 * 109.47140 * 237.33403 * 19 18 2 21 21 C 1.52998 * 109.47462 * 117.33110 * 19 18 2 22 22 H 1.09006 * 109.46926 * 264.39827 * 1 2 3 23 23 H 1.08998 * 109.46903 * 24.39585 * 1 2 3 24 24 H 1.08994 * 109.47216 * 144.39855 * 1 2 3 25 25 H 1.08004 * 126.37560 * 359.97438 * 5 4 3 26 26 H 1.08996 * 109.47738 * 210.02883 * 7 6 5 27 27 H 1.09003 * 109.47566 * 330.03274 * 7 6 5 28 28 H 0.97003 * 120.00230 * 180.02562 * 11 10 8 29 29 H 1.08006 * 125.70641 * 180.02562 * 16 6 5 30 30 H 1.09004 * 109.46893 * 357.32876 * 19 18 2 31 31 H 1.09002 * 109.47590 * 54.04753 * 20 19 18 32 32 H 1.09000 * 109.46884 * 294.04812 * 20 19 18 33 33 H 1.09002 * 109.47302 * 174.04460 * 20 19 18 34 34 H 1.08995 * 109.47204 * 179.97438 * 21 19 18 35 35 H 1.09000 * 109.46805 * 300.00415 * 21 19 18 36 36 H 1.09003 * 109.46541 * 60.00194 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5157 1.4392 0.0000 4 6 3.9712 0.4462 -0.0008 5 6 5.3358 0.5354 -0.0016 6 6 5.8385 -0.7749 -0.0024 7 6 7.2926 -1.1702 -0.0040 8 6 7.7788 -1.3028 1.4163 9 1 7.1021 -1.1197 2.2379 10 6 9.0869 -1.6591 1.6668 11 7 9.5109 -1.7753 2.9063 12 14 10.2570 -1.9766 0.2457 13 1 10.9348 -0.7098 -0.1299 14 1 11.2732 -2.9790 0.6557 15 1 9.4934 -2.4934 -0.9182 16 6 4.7856 -1.6154 -0.0026 17 7 3.6213 -0.8648 0.0044 18 6 2.2574 -1.0709 -0.0005 19 6 1.6640 -2.4561 -0.0005 20 6 2.1793 -3.2317 1.2135 21 6 2.0714 -3.1855 -1.2822 22 1 -0.3633 -0.1003 1.0228 23 1 -0.3633 0.9359 -0.4245 24 1 -0.3633 -0.8355 -0.5982 25 1 5.9183 1.4449 -0.0025 26 1 7.4094 -2.1239 -0.5186 27 1 7.8763 -0.4063 -0.5178 28 1 10.4314 -2.0256 3.0826 29 1 4.8401 -2.6941 -0.0027 30 1 0.5773 -2.3858 0.0478 31 1 1.9820 -2.6601 2.1204 32 1 3.2524 -3.3937 1.1124 33 1 1.6705 -4.1939 1.2726 34 1 1.6426 -4.1875 -1.2820 35 1 1.7043 -2.6329 -2.1471 36 1 3.1581 -3.2558 -1.3304 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259536575.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:09 Heat of formation + Delta-G solvation = 60.635853 kcal Electronic energy + Delta-G solvation = -17500.250059 eV Core-core repulsion = 14883.551575 eV Total energy + Delta-G solvation = -2616.698484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.61231 -37.37113 -33.95177 -32.97435 -31.61386 -29.18106 -28.18856 -27.28329 -25.68733 -23.13218 -22.37042 -20.85955 -19.00987 -18.46351 -17.47556 -16.69586 -15.35371 -15.27185 -14.72731 -14.21932 -13.83306 -13.57926 -13.41326 -13.28643 -13.14127 -12.64646 -12.37524 -12.29090 -12.17241 -11.79800 -11.64381 -11.38186 -11.20072 -10.90683 -10.61809 -10.53240 -10.40172 -10.07506 -9.83173 -9.39244 -9.25795 -8.51505 -7.57410 -6.77323 -6.00436 -3.98259 1.38961 1.62829 2.08353 2.77725 3.12834 3.33655 3.40942 3.43976 3.63008 4.45478 4.47473 4.69671 4.95644 5.03147 5.11064 5.24942 5.31672 5.39109 5.47298 5.50535 5.59521 5.71624 5.76222 5.80406 5.88596 6.09738 6.10633 6.20255 6.24133 6.63248 6.73763 7.05022 7.10623 7.42402 7.67538 7.74469 7.85064 8.59706 9.06766 9.60479 11.12898 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.005454 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.587656 B = 5132.944253 C = 5646.855491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.216 4.216 3 S 0.072 5.928 4 C -0.053 4.053 5 C -0.145 4.145 6 C -0.062 4.062 7 C 0.045 3.955 8 C -0.508 4.508 9 H 0.073 0.927 10 C 0.067 3.933 11 N -0.903 5.903 12 Si 0.877 3.123 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.265 1.265 16 C -0.026 4.026 17 N -0.390 5.390 18 C 0.103 3.897 19 C -0.038 4.038 20 C -0.151 4.151 21 C -0.149 4.149 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.140 0.860 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.162 0.838 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.813 0.130 -7.913 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.335 4.335 3 S 0.331 5.669 4 C -0.272 4.272 5 C -0.179 4.179 6 C -0.068 4.068 7 C 0.007 3.993 8 C -0.546 4.546 9 H 0.091 0.909 10 C -0.134 4.134 11 N -0.542 5.542 12 Si 0.704 3.296 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.189 1.189 16 C -0.152 4.152 17 N -0.062 5.062 18 C -0.007 4.007 19 C -0.059 4.059 20 C -0.209 4.209 21 C -0.207 4.207 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.158 0.842 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.180 0.820 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.204 1.357 -7.794 20.770 hybrid contribution 1.128 -1.485 -0.465 1.922 sum -18.076 -0.128 -8.259 19.874 Atomic orbital electron populations 1.20193 0.86720 1.02941 1.02685 1.23043 1.00253 0.94447 1.15766 1.84151 0.91968 1.05641 1.85131 1.23224 0.98420 0.86744 1.18829 1.20399 0.88624 0.98440 1.10462 1.19795 0.96252 0.91184 0.99547 1.18241 0.86473 0.96266 0.98290 1.20998 0.96391 1.46449 0.90771 0.90913 1.24992 0.97972 0.94963 0.95428 1.69907 1.16842 1.48714 1.18759 0.86820 0.81014 0.78429 0.83319 1.20191 1.21402 1.18918 1.21728 0.80748 0.96741 1.15946 1.42234 1.03327 1.06506 1.54169 1.18887 0.81366 0.97095 1.03395 1.20085 1.00144 0.88599 0.97045 1.21903 1.02468 0.99680 0.96816 1.21879 1.02663 0.99984 0.96138 0.90836 0.91133 0.90682 0.84235 0.95584 0.95658 0.92741 0.82033 0.88711 0.92249 0.91572 0.91745 0.91691 0.92413 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 9.60 36.01 0.35 -0.25 16 2 C -0.22 -2.89 6.40 -35.96 -0.23 -3.12 16 3 S 0.07 1.10 23.35 -107.50 -2.51 -1.41 16 4 C -0.05 -1.00 7.77 -16.38 -0.13 -1.13 16 5 C -0.14 -3.01 10.87 -39.33 -0.43 -3.44 16 6 C -0.06 -1.36 5.30 -105.08 -0.56 -1.92 16 7 C 0.05 1.11 4.53 -29.04 -0.13 0.97 16 8 C -0.51 -14.66 9.65 -34.44 -0.33 -14.99 16 9 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 10 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 11 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 12 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 16 C -0.03 -0.50 9.97 -15.77 -0.16 -0.66 16 17 N -0.39 -7.01 3.10 -58.23 -0.18 -7.19 16 18 C 0.10 1.50 5.32 -81.50 -0.43 1.06 16 19 C -0.04 -0.42 3.01 -91.78 -0.28 -0.70 16 20 C -0.15 -1.78 9.02 37.16 0.34 -1.44 16 21 C -0.15 -1.58 9.16 37.16 0.34 -1.24 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.55 6.91 -51.93 -0.36 0.19 16 25 H 0.14 2.73 8.06 -52.48 -0.42 2.30 16 26 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 27 H 0.03 0.61 7.57 -51.93 -0.39 0.21 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.16 2.88 6.68 -52.48 -0.35 2.53 16 30 H 0.09 0.84 6.16 -51.93 -0.32 0.52 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.91 6.31 -51.93 -0.33 0.58 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.78 6.77 -51.93 -0.35 0.43 16 LS Contribution 305.50 15.07 4.60 4.60 Total: -1.00 -32.01 305.50 -8.75 -40.76 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.02 Total: -1.43 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -1.75 Total: -24.99 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.59 Total: -34.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.51 Total: -1.41 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.01 -8.75 -40.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259536575.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.396 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds