Wall clock time and date at job start Mon Mar 30 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.75749 * 125.02473 * 2 1 4 4 C 1.76193 * 90.72166 * 180.02562 * 3 2 1 5 5 C 1.36753 * 141.95901 * 179.97438 * 4 3 2 6 6 C 1.40342 * 107.25015 * 180.02562 * 5 4 3 7 7 C 1.50690 * 126.19457 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.47281 * 90.02754 * 7 6 5 9 9 H 1.07998 * 119.99337 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00425 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00112 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99845 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47167 * 90.00263 * 12 10 8 14 14 H 1.48510 * 109.46949 * 209.99865 * 12 10 8 15 15 H 1.48496 * 109.47355 * 329.99938 * 12 10 8 16 16 C 1.34724 * 107.61133 * 0.02562 * 6 5 4 17 17 N 1.35694 * 109.35995 * 359.75823 * 4 3 2 18 18 C 1.30763 * 125.01981 * 180.02562 * 2 1 3 19 19 C 1.50696 * 121.78901 * 359.97438 * 18 2 1 20 20 C 1.52998 * 109.47140 * 237.33403 * 19 18 2 21 21 C 1.52998 * 109.47462 * 117.33110 * 19 18 2 22 22 H 1.09006 * 109.46926 * 264.39827 * 1 2 3 23 23 H 1.08998 * 109.46903 * 24.39585 * 1 2 3 24 24 H 1.08994 * 109.47216 * 144.39855 * 1 2 3 25 25 H 1.08004 * 126.37560 * 359.97438 * 5 4 3 26 26 H 1.08996 * 109.47738 * 210.02883 * 7 6 5 27 27 H 1.09003 * 109.47566 * 330.03274 * 7 6 5 28 28 H 0.97003 * 120.00230 * 180.02562 * 11 10 8 29 29 H 1.08006 * 125.70641 * 180.02562 * 16 6 5 30 30 H 1.09004 * 109.46893 * 357.32876 * 19 18 2 31 31 H 1.09002 * 109.47590 * 54.04753 * 20 19 18 32 32 H 1.09000 * 109.46884 * 294.04812 * 20 19 18 33 33 H 1.09002 * 109.47302 * 174.04460 * 20 19 18 34 34 H 1.08995 * 109.47204 * 179.97438 * 21 19 18 35 35 H 1.09000 * 109.46805 * 300.00415 * 21 19 18 36 36 H 1.09003 * 109.46541 * 60.00194 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5157 1.4392 0.0000 4 6 3.9712 0.4462 -0.0008 5 6 5.3358 0.5354 -0.0016 6 6 5.8385 -0.7749 -0.0024 7 6 7.2926 -1.1702 -0.0040 8 6 7.7788 -1.3028 1.4163 9 1 7.1021 -1.1197 2.2379 10 6 9.0869 -1.6591 1.6668 11 7 9.5109 -1.7753 2.9063 12 14 10.2570 -1.9766 0.2457 13 1 10.9348 -0.7098 -0.1299 14 1 11.2732 -2.9790 0.6557 15 1 9.4934 -2.4934 -0.9182 16 6 4.7856 -1.6154 -0.0026 17 7 3.6213 -0.8648 0.0044 18 6 2.2574 -1.0709 -0.0005 19 6 1.6640 -2.4561 -0.0005 20 6 2.1793 -3.2317 1.2135 21 6 2.0714 -3.1855 -1.2822 22 1 -0.3633 -0.1003 1.0228 23 1 -0.3633 0.9359 -0.4245 24 1 -0.3633 -0.8355 -0.5982 25 1 5.9183 1.4449 -0.0025 26 1 7.4094 -2.1239 -0.5186 27 1 7.8763 -0.4063 -0.5178 28 1 10.4314 -2.0256 3.0826 29 1 4.8401 -2.6941 -0.0027 30 1 0.5773 -2.3858 0.0478 31 1 1.9820 -2.6601 2.1204 32 1 3.2524 -3.3937 1.1124 33 1 1.6705 -4.1939 1.2726 34 1 1.6426 -4.1875 -1.2820 35 1 1.7043 -2.6329 -2.1471 36 1 3.1581 -3.2558 -1.3304 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259536575.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:09 Heat of formation + Delta-G solvation = 43.128945 kcal Electronic energy + Delta-G solvation = -17501.009216 eV Core-core repulsion = 14883.551575 eV Total energy + Delta-G solvation = -2617.457640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.99150 -38.53815 -35.52547 -34.49712 -33.15314 -30.84575 -29.62984 -28.14388 -27.07498 -24.53360 -23.97592 -22.11984 -20.44303 -19.93492 -18.93075 -18.64621 -16.58218 -16.38619 -16.26553 -15.87318 -15.11049 -14.89826 -14.63701 -14.44604 -14.28184 -13.92296 -13.88761 -13.65164 -13.27943 -13.14988 -12.91597 -12.70179 -12.42689 -12.27752 -12.19711 -11.85111 -11.81451 -11.64442 -11.61919 -11.16237 -10.76278 -10.73489 -9.10748 -8.26670 -8.10740 -6.31141 0.15919 0.33348 0.84358 1.39209 1.39710 1.40873 1.53219 1.83277 2.00311 2.38531 3.07617 3.46653 3.79086 3.94146 4.08722 4.18604 4.31246 4.36733 4.53153 4.58864 4.67178 4.76443 4.77176 4.85500 4.92608 4.98495 5.01176 5.05539 5.09452 5.16333 5.24272 5.33213 5.48928 5.59171 5.85804 6.02693 6.31299 6.41035 6.74732 7.31846 8.90431 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.005454 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.587656 B = 5132.944253 C = 5646.855491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.196 4.196 3 S 0.095 5.905 4 C -0.066 4.066 5 C -0.181 4.181 6 C -0.101 4.101 7 C 0.055 3.945 8 C -0.516 4.516 9 H 0.021 0.979 10 C 0.007 3.993 11 N -0.953 5.953 12 Si 0.953 3.047 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.243 1.243 16 C -0.021 4.021 17 N -0.386 5.386 18 C 0.068 3.932 19 C -0.031 4.031 20 C -0.151 4.151 21 C -0.147 4.147 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.101 0.899 25 H 0.137 0.863 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.267 0.733 29 H 0.173 0.827 30 H 0.131 0.869 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.510 -0.468 -9.812 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.314 4.314 3 S 0.353 5.647 4 C -0.287 4.287 5 C -0.215 4.215 6 C -0.107 4.107 7 C 0.017 3.983 8 C -0.554 4.554 9 H 0.040 0.960 10 C -0.190 4.190 11 N -0.593 5.593 12 Si 0.776 3.224 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.167 1.167 16 C -0.149 4.149 17 N -0.057 5.057 18 C -0.040 4.040 19 C -0.052 4.052 20 C -0.208 4.208 21 C -0.205 4.205 22 H 0.109 0.891 23 H 0.103 0.897 24 H 0.120 0.880 25 H 0.155 0.845 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.190 0.810 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.946 0.762 -9.702 24.007 hybrid contribution 1.745 -1.219 0.220 2.140 sum -20.201 -0.457 -9.482 22.320 Atomic orbital electron populations 1.20461 0.82929 1.04919 1.04473 1.23785 1.02354 0.92748 1.12546 1.84086 0.90132 1.06038 1.84412 1.23622 0.99215 0.88319 1.17500 1.20408 0.90007 0.98042 1.13023 1.19668 0.95711 0.92584 1.02719 1.18033 0.88349 0.96668 0.95293 1.21187 0.96035 1.46348 0.91867 0.96019 1.25988 0.99938 0.94439 0.98609 1.70070 1.17639 1.50098 1.21525 0.85617 0.78284 0.78757 0.79757 1.19164 1.20743 1.16652 1.21742 0.81150 0.97044 1.14965 1.42401 1.04494 1.05820 1.52973 1.19554 0.79765 0.99500 1.05215 1.20238 1.01753 0.86396 0.96820 1.21904 1.01043 1.01131 0.96752 1.21874 1.01193 1.01426 0.95958 0.89089 0.89701 0.88014 0.84466 0.94752 0.95305 0.92424 0.80982 0.85161 0.93347 0.94386 0.88966 0.89235 0.91928 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 9.60 71.24 0.68 -0.21 16 2 C -0.20 -4.63 6.40 25.89 0.17 -4.46 16 3 S 0.09 2.73 23.35 -56.49 -1.32 1.41 16 4 C -0.07 -2.52 7.77 83.75 0.65 -1.87 16 5 C -0.18 -7.89 10.87 22.43 0.24 -7.65 16 6 C -0.10 -4.65 5.30 -20.16 -0.11 -4.76 16 7 C 0.05 2.75 4.53 29.10 0.13 2.88 16 8 C -0.52 -31.30 9.65 25.60 0.25 -31.05 16 9 H 0.02 1.48 7.98 -2.91 -0.02 1.46 16 10 C 0.01 0.40 5.47 84.65 0.46 0.86 16 11 N -0.95 -61.28 13.96 21.44 0.30 -60.98 16 12 Si 0.95 44.93 27.47 68.60 1.88 46.82 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 16 C -0.02 -0.86 9.97 82.83 0.83 -0.03 16 17 N -0.39 -13.85 3.10 -338.14 -1.05 -14.90 16 18 C 0.07 1.83 5.32 41.80 0.22 2.06 16 19 C -0.03 -0.61 3.01 -11.54 -0.03 -0.65 16 20 C -0.15 -3.29 9.02 71.98 0.65 -2.64 16 21 C -0.15 -2.73 9.16 71.98 0.66 -2.07 16 22 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.10 0.87 6.91 -2.39 -0.02 0.85 16 25 H 0.14 5.75 8.06 -2.91 -0.02 5.73 16 26 H 0.03 1.64 7.20 -2.39 -0.02 1.63 16 27 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 28 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 29 H 0.17 6.37 6.68 -2.91 -0.02 6.35 16 30 H 0.13 1.63 6.16 -2.38 -0.01 1.62 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.04 1.03 6.31 -2.39 -0.02 1.02 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 0.90 6.77 -2.39 -0.02 0.88 16 Total: -1.00 -73.63 305.50 5.63 -68.00 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.01 Total: 9.23 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 4.80 Total: -49.58 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -0.75 Total: -75.88 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.32 Total: 1.41 kcal Total: -73.63 5.63 -68.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259536575.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.124 kcal (2) G-P(sol) polarization free energy of solvation -73.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds